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H. Ghodke · SciRah

Researcher profile · Semantic Scholar

H. Ghodke

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H. Ghodke — researcher profile on SciRah

h-index: 15
Works: 50
Citations: 950

Most-cited papers

Regulation of Mutagenic DNA Polymerase V Activation in Space and Time
A. Robinson, J. McDonald, V. Caldas, M. Patel +7 more
2015PLoS Genetics96 citations Open access
Semantic Scholar
Single Molecule Studies of Physiologically Relevant Telomeric Tails Reveal POT1 Mechanism for Promoting G-quadruplex Unfolding*
Hong Wang, Gerald J. Nora, H. Ghodke, Patricia L. Opresko
2010Journal of Biological Chemistry94 citations Open access
Semantic Scholar
Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair
Joanne I. Yeh, A. Levine, Shou-Cheng Du, U. Chinte +7 more
2012Proceedings of the National Academy of Sciences of the United States of America86 citations Open access
Semantic Scholar
The Shu complex interacts with Rad51 through the Rad51 paralogues Rad55–Rad57 to mediate error-free recombination
Stephen K Godin, A. Wier, Faiz F. Kabbinavar, Dominique S Bratton-Palmer +4 more
2013Nucleic Acids Research66 citations Open access
Semantic Scholar
Single-molecule analysis reveals human UV-damaged DNA-binding protein (UV-DDB) dimerizes on DNA via multiple kinetic intermediates
H. Ghodke, Hong Wang, C. Hsieh, S. Woldemeskel +3 more
2014Proceedings of the National Academy of Sciences of the United States of America62 citations Open access
Semantic Scholar
The transcription-repair coupling factor Mfd associates with RNA polymerase in the absence of exogenous damage
H. Ho, A. V. van Oijen, H. Ghodke
2018Nature Communications58 citations Open access
Semantic Scholar
Nuclease dead Cas9 is a programmable roadblock for DNA replication
Kelsey S. Whinn, Gurleen Kaur, Jacob S. Lewis, G. Schauer +10 more
2018Scientific Reports56 citations Open access
Semantic Scholar
Real-time single-molecule imaging reveals a direct interaction between UvrC and UvrB on DNA tightropes
C. Hughes, Hong Wang, H. Ghodke, M. Simons +4 more
2013Nucleic Acids Research56 citations Open access
Semantic Scholar
Spatial and temporal organization of RecA in the Escherichia coli DNA-damage response
H. Ghodke, B. Paudel, Jacob S. Lewis, Slobodan Jergic +6 more
2018bioRxiv52 citations Open access
Semantic Scholar
RecFOR epistasis group: RecF and RecO have distinct localizations and functions in Escherichia coli
Sarah S. Henrikus, Camille Henry, H. Ghodke, E. Wood +6 more
2019Nucleic Acids Research38 citations Open access
Semantic Scholar
Room temperature synthesis of titanium dioxide nanoparticles of different phases in water in oil microemulsion
R. Keswani, H. Ghodke, D. Sarkar, K. Khilar +1 more
201037 citations
Semantic Scholar
Single-molecule live-cell imaging visualizes parallel pathways of prokaryotic nucleotide excision repair
H. Ghodke, H. Ho, A. V. van Oijen
2020Nature Communications33 citations Open access
Semantic Scholar
Anisotropic functionalization of upconversion nanoparticles
W. Ren, Shihui Wen, S. Tawfik, Q. Su +6 more
2018Chemical Science33 citations Open access
Semantic Scholar
Single-molecule imaging reveals molecular coupling between transcription and DNA repair machinery in live cells
H. Ho, A. V. van Oijen, H. Ghodke
2020Nature Communications20 citations Open access
Semantic Scholar
Design of DNA rolling-circle templates with controlled fork topology to study mechanisms of DNA replication.
Enrico Monachino, H. Ghodke, Richard R. Spinks, Ben S Hoatson +4 more
2018Analytical Biochemistry18 citations Open access
Semantic Scholar
Structural characterisation of the complete cycle of sliding clamp loading in Escherichia coli
Zhi-Qiang Xu, Slobodan Jergic, A. T. Lo, Alok Pradhan +7 more
2023bioRxiv15 citations Open access
Semantic Scholar
Backbone-branched DNA building blocks for facile angular control in nanostructures.
E. Paredes, Xiao-Juan Zhang, H. Ghodke, V. Yadavalli +1 more
2013ACS Nano15 citations
Semantic Scholar
Single-molecule live-cell imaging reveals RecB-dependent function of DNA polymerase IV in double strand break repair
Sarah S. Henrikus, Camille Henry, A. E. McGrath, Slobodan Jergic +13 more
2020Nucleic Acids Research14 citations Open access
Semantic Scholar
University of Groningen Single-Molecule Specific Mislocalization of Red Fluorescent Proteins in Live Escherichia coli
H. Ghodke, V. Caldas, C. Punter, A. V. van Oijen +1 more
201613 citations
Semantic Scholar
Optimised nanobody-based quenchbodies for enhanced protein detection
Jordan H. Cater, Nehad S. El Salamouni, Ghada H. Mansour, Sebastian Hutchinson +12 more
2025bioRxiv12 citations Open access
Semantic Scholar
Identification of multiple kinetic populations of DNA-binding proteins in live cells
H. Ho, Daniel Zalami, J. Köhler, A. V. van Oijen +1 more
2019bioRxiv12 citations Open access
Semantic Scholar
Mechanism of transcription modulation by the transcription-repair coupling factor
B. Paudel, Zhi-Qiang Xu, Slobodan Jergic, A. Oakley +7 more
2022bioRxiv11 citations Open access
Semantic Scholar
Single-molecule visualization of stalled replication-fork rescue by the Escherichia coli Rep helicase
Kelsey S. Whinn, Zhi-Qiang Xu, Slobodan Jergic, Nischal Sharma +4 more
2022bioRxiv11 citations Open access
Semantic Scholar
DNA double-strand breaks induced by reactive oxygen species promote DNA polymerase IV activity in Escherichia coli
Sarah S. Henrikus, Camille Henry, J. McDonald, Yvonne Hellmich +8 more
2019bioRxiv9 citations Open access
Semantic Scholar
iSBatch: a batch-processing platform for data analysis and exploration of live-cell single-molecule microscopy images and other hierarchical datasets.
V. Caldas, C. Punter, H. Ghodke, A. Robinson +1 more
2015Molecular Biosystems9 citations
Semantic Scholar
Single-molecule live-cell imaging of bacterial DNA repair and damage tolerance.
H. Ghodke, H. Ho, A. V. van Oijen
2017Biochemical Society Transactions8 citations
Semantic Scholar
Spatiotemporal Dynamics of Single-stranded DNA Intermediates in Escherichia coli
Megan E. Cherry, K. Dubiel, Camille Henry, E. Wood +6 more
2023bioRxiv3 citations Open access
Semantic Scholar
Single-molecule studies of helicases and translocases in prokaryotic genome-maintenance pathways
Kelsey S. Whinn, A. V. van Oijen, H. Ghodke
2021DNA Repair3 citations Open access
Semantic Scholar
Spatiotemporal characterization of single-stranded DNA Intermediates after UV Irradiation: I: Post-replication gaps formed during slow growth
Nischal Sharma, Megan E. Cherry, Camille Henry, E. Wood +4 more
2026PLoS Genetics2 citations Open access
Semantic Scholar
Single-molecule live-cell imaging visualizes parallel pathways of prokaryotic nucleotide excision repair
H. Ghodke, H. Ho, A. V. van Oijen
2019bioRxiv2 citations Open access
Semantic Scholar
nCas9-based method for rolling-circle DNA substrate generation
Nischal Sharma, Kelsey S. Whinn, H. Ghodke, A. V. van Oijen +2 more
2025Analytical Biochemistry1 citations Open access
Semantic Scholar
Single-Molecule Fluorescence Imaging of DNA Replication Stalling at Sites of Nucleoprotein Complexes.
Kelsey S. Whinn, Nischal Sharma, A. V. van Oijen, H. Ghodke
2024Methods in molecular biology1 citations
Semantic Scholar
UmuD and RecA* modulate the DNA-binding activity of DNA polymerase IV in Escherichia coli
Sarah S. Henrikus, A. E. McGrath, Slobodan Jergic, Matthew Ritger +7 more
20191 citations Open access
Semantic Scholar
Spy-ing on Cas9: Single-molecule tools reveal the enzymology of Cas9
Kelsey S. Whinn, A. V. van Oijen, H. Ghodke
2019Current Opinion in Biomedical Engineering1 citations
Semantic Scholar
Author response: Spatial and temporal organization of RecA in the Escherichia coli DNA-damage response
H. Ghodke, B. Paudel, Jacob S. Lewis, Slobodan Jergic +6 more
20191 citations Open access
Semantic Scholar
Identification of Multiple Kinetic Populations of DNA-Binding Proteins in Live Cells.
H. Ho, Daniel Zalami, J. Köhler, A. V. van Oijen +1 more
2019Biophysical Journal1 citations Open access
Semantic Scholar
Early integration of the individual student in academic activities: a novel classroom concept for graduate education in molecular biophysics and structural biology
S. Leuba, Sean M. Carney, Elizabeth M. Dahlburg, Rebecca J Eells +4 more
2014BMC Biophysics1 citations Open access
Semantic Scholar
Structural basis of the nucleotide incorporation cycle of bacterial DNA polymerase III
Zhi-Qiang Xu, Slobodan Jergic, Qiang Zhu, Hai-Bo Yu +8 more
2026bioRxiv0 citations Open access
Semantic Scholar
Biochemical and single-molecule techniques to study accessory helicase resolution of R-loop proteins at stalled replication forks.
Alisa E. Shaw, Sreeya Kairamkonda, H. Ghodke, G. Schauer
2022Methods in Enzymology0 citations
Semantic Scholar
The effects of mCI inhibition on RecA activity
Neema A. Mbele, H. Ghodke, M. Cox, A. Oijen
2019The FASEB Journal0 citations
Semantic Scholar
Single-molecule imaging reveals molecular coupling between transcription and DNA repair in live cells
H. Ho, A. V. van Oijen, H. Ghodke
2019bioRxiv0 citations Open access
Semantic Scholar
Modulation of DNA polymerase IV activity by UmuD and RecA* observed by single-molecule time-lapse microscopy
Sarah S. Henrikus, A. E. McGrath, Slobodan Jergic, Matthew Ritger +7 more
2019bioRxiv0 citations Open access
Semantic Scholar
Peer Review #3 of "Aberrant repair initiated by the adenine-DNA glycosylase does not play a role in UV-induced mutagenesis in Escherichia coli (v0.1)"
Caroline Zutterling, A. Mursalimov, I. Talhaoui, Z. Koshenov +256 more
20180 citations Open access
Semantic Scholar
Resolving the Gordian Knot: Srs2 Strips Intermediates Formed during Homologous Recombination.
H. Ghodke, Jacob S. Lewis, A. V. van Oijen
2017TIBS -Trends in Biochemical Sciences. Regular ed0 citations
Semantic Scholar
Single molecule studies of damaged recognition by the human UV-damaged DNA-binding protein (UV-DDB)
H. Ghodke
20130 citations
Semantic Scholar
WT UV-DDB Performs a 3D Search on DNA whereas the XP-E Mutant (K244E DDB2) Mutant Slides
H. Ghodke, Hong Wang, C. Hsieh, G. Gibson +4 more
20130 citations Open access
Semantic Scholar
Single Molecule Studies of Physiologically Relevant Telomeric Tails Reveal POT1 Mechanism for Promoting
Hong Wang, Gerald J. Nora, H. Ghodke, Patricia L. Opresko
20110 citations
Semantic Scholar
Direct Visualization Of Joining of DNA Fragments By LigIIIβ Using Atomic Force Microscopy
H. Ghodke, Hong Wang, Elizabeth Cotner-Gohara, In-Kwon Kim +2 more
20100 citations Open access
Semantic Scholar
Modeling and Control of Free Radical Co-Polymerization
H. Ghodke, S. Raman, B. Ydstie
20090 citations
Semantic Scholar
Spatial and temporal organization of RecA in the Escherichia coli 1 DNA-damage response 2
H. Ghodke, B. Paudel, Jacob S. Lewis, Slobodan Jergic +7 more
0 citations
Semantic Scholar

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