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K. Murakami · SciRah

Researcher profile · Semantic Scholar

K. Murakami

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K. Murakami — researcher profile on SciRah

h-index: 23
Works: 85
Citations: 2,079

Most-cited papers

Formation of β-amyloid protein deposits in brains of transgenic mice
D. Quon, Yu Wang, R. Catalano, J. Scardina +2 more
1991Nature373 citations
Semantic Scholar
Structural basis for actin assembly, activation of ATP hydrolysis, and delayed phosphate release.
K. Murakami, T. Yasunaga, Taro Q. P. Noguchi, Yuki Gomibuchi +3 more
2010Cell162 citations Open access
Semantic Scholar
Mediator structure and rearrangements required for holoenzyme formation
K. Tsai, Xiaodi Yu, S. Gopalan, T. Chao +7 more
2017Nature148 citations Open access
Semantic Scholar
Structural basis for Ca2+-regulated muscle relaxation at interaction sites of troponin with actin and tropomyosin.
K. Murakami, F. Yumoto, S. Ohki, T. Yasunaga +2 more
2005Journal of Molecular Biology112 citations
Semantic Scholar
Structure of an RNA polymerase II preinitiation complex
K. Murakami, K. Tsai, Nir Kalisman, D. Bushnell +2 more
2015Proceedings of the National Academy of Sciences of the United States of America92 citations Open access
Semantic Scholar
Structural basis for tropomyosin overlap in thin (actin) filaments and the generation of a molecular swivel by troponin-T
K. Murakami, M. Stewart, K. Nozawa, K. Tomii +6 more
2008Proceedings of the National Academy of Sciences of the United States of America92 citations Open access
Semantic Scholar
Real-Time Observation of the Initiation of RNA Polymerase II Transcription
F. Fazal, Cong A. Meng, K. Murakami, R. Kornberg +1 more
2015Nature90 citations Open access
Semantic Scholar
Transcription factors TFIIF and TFIIS promote transcript elongation by RNA polymerase II by synergistic and independent mechanisms
V. Schweikhard, Cong A. Meng, K. Murakami, C. Kaplan +2 more
2014Proceedings of the National Academy of Sciences of the United States of America77 citations Open access
Semantic Scholar
Formation of beta-amyloid protein deposits in brains of transgenic mice.
D. Quon, Y. Wang, R. Catalano, J. Scardina +2 more
1991Nature76 citations
Semantic Scholar
Secretion of beta-amyloid precursor protein involves multiple cleavage sites.
Zi-Yang Zhong, J. Higaki, K. Murakami, Yu Wang +3 more
1994Journal of Biological Chemistry72 citations Open access
Semantic Scholar
Cryo-EM structure of NPF-bound human Arp2/3 complex and activation mechanism
A. Zimmet, T. van Eeuwen, M. Boczkowska, G. Rebowski +2 more
2020Science Advances71 citations Open access
Semantic Scholar
Structure of the Human Core Centromeric Nucleosome Complex
P. K. Allu, Jennine M. Dawicki-McKenna, T. van Eeuwen, Moriya Slavin +5 more
2019Current Biology65 citations Open access
Semantic Scholar
Subunit architecture of general transcription factor TFIIH
B. Gibbons, E. Brignole, Maia Azubel, K. Murakami +4 more
2012Proceedings of the National Academy of Sciences of the United States of America61 citations Open access
Semantic Scholar
Structure and noncanonical Cdk8 activation mechanism within an Argonaute-containing Mediator kinase module
Yi-Chuan Li, T. Chao, H. Kim, T. Cholko +9 more
2021Science Advances51 citations Open access
Semantic Scholar
Human endothelial cells augment early CD40 ligand expression in activated CD4+ T cells through LFA-3-mediated stabilization of mRNA.
K. Murakami, Wei-Lie Ma, R. Fuleihan, J. Pober
1999Journal of Immunology48 citations Open access
Semantic Scholar
Uncoupling promoter opening from start site scanning
K. Murakami, Pierre-Jean Mattei, Ralph E. Davis, Huiyan Jin +2 more
2015Molecules and Cells41 citations Open access
Semantic Scholar
Cryo-EM structure of TFIIH/Rad4–Rad23–Rad33 in damaged DNA opening in nucleotide excision repair
T. van Eeuwen, Yoonjung Shim, H. Kim, Ting-Ting Zhao +5 more
2021Nature Communications39 citations Open access
Semantic Scholar
Formation and Fate of a Complete 31-Protein RNA Polymerase II Transcription Preinitiation Complex*
K. Murakami, G. Calero, Christopher R. Brown, Xin Liu +3 more
2013Journal of Biological Chemistry37 citations Open access
Semantic Scholar
Tfb6, a previously unidentified subunit of the general transcription factor TFIIH, facilitates dissociation of Ssl2 helicase after transcription initiation
K. Murakami, B. Gibbons, Ralph E. Davis, S. Nagai +5 more
2012Proceedings of the National Academy of Sciences of the United States of America35 citations Open access
Semantic Scholar
Structure of a Plasmodium yoelii gene-encoded protein homologous to the Ca(2+)-ATPase of rabbit skeletal muscle sarcoplasmic reticulum.
K. Murakami, Kazuyuki Tanabe, S. Takada
1990Journal of Cell Science32 citations
Semantic Scholar
Structural basis of a transcription pre-initiation complex on a divergent promoter
Jose J Gorbea Colón, L. Palao, Shin-Fu Chen, H. Kim +4 more
2023Molecules and Cells29 citations Open access
Semantic Scholar
Structural insight on assembly-line catalysis in terpene biosynthesis
J. Faylo, T. van Eeuwen, H. Kim, Jose J. Gorbea Colón +3 more
2021Nature Communications26 citations Open access
Semantic Scholar
Cryo-EM structures of engineered active bc1-cbb3 type CIII2CIV super-complexes and electronic communication between the complexes
S. Steimle, T. van Eeuwen, Y. Ozturk, H. Kim +6 more
2021Nature Communications24 citations Open access
Semantic Scholar
The capping enzyme facilitates promoter escape and assembly of a follow-on preinitiation complex for reinitiation
Rina Fujiwara, Nivedita Damodaren, J. Wilusz, K. Murakami
2019Proceedings of the National Academy of Sciences of the United States of America21 citations Open access
Semantic Scholar
Transgenic overexpression of USP15 in the heart induces cardiac remodeling in mice.
Y. Isumi, Tsuyoshi Hirata, Hiroshi Saitoh, T. Miyakawa +5 more
2011Biochemical and Biophysical Research Communications - BBRC21 citations
Semantic Scholar
Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II
Chun Yang, Rina Fujiwara, H. Kim, Pratik Basnet +6 more
2022Molecules and Cells18 citations Open access
Semantic Scholar
A potent anti-metastatic activity of tumor invasion-inhibiting factor-2 and albumin conjugate.
Atsushi Isoai, H. Goto-Tsukamoto, K. Murakami, H. Akedo +1 more
1993Biochemical and Biophysical Research Communications - BBRC17 citations
Semantic Scholar
An antigen of Plasmodium yoelii that translocates into the mouse erythrocyte membrane upon entry into the host cell.
K. Murakami, K. Tanabe
1985Journal of Cell Science17 citations
Semantic Scholar
Germline‐specific Antigens Identified by Monoclonal Antibodies in the Nematode Caenorhabditis elegans 1
Y. Yamaguchi, K. Murakami, M. Furusawa, J. Miwa
1983Development, Growth and Differentiation17 citations Open access
Semantic Scholar
Def1 interacts with TFIIH and modulates RNA polymerase II transcription
Nivedita Damodaren, T. van Eeuwen, Joanna Zamel, E. Lin-Shiao +2 more
2017Proceedings of the National Academy of Sciences of the United States of America16 citations Open access
Semantic Scholar
In vitro reconstitution of yeast RNA polymerase II transcription initiation with high efficiency
Rina Fujiwara, K. Murakami
2019Methods15 citations Open access
Semantic Scholar
Cryo-EM Structure and Functional Studies of EBNA1 Binding to the Family of Repeats and Dyad Symmetry Elements of Epstein-Barr Virus oriP
Y. Mei, T. Messick, Jayaraju Dheekollu, H. Kim +5 more
2022Journal of Virology14 citations Open access
Semantic Scholar
Structure of TFIIK for phosphorylation of CTD of RNA polymerase II
T. van Eeuwen, Tao Li, H. Kim, Jose J Gorbea Colón +5 more
2021Science Advances13 citations Open access
Semantic Scholar
Tumorigenicity depends on angiogenic potential of tumor cells: dominant role of vascular endothelial growth factor and/or fibroblast growth factors produced by tumor cells
M. Aonuma, M. Iwahana, Y. Nakayama, K. Hirotani +4 more
2004Angiogenesis12 citations
Semantic Scholar
RNAs nonspecifically inhibit RNA polymerase II by preventing binding to the DNA template
Dave A. Pai, C. Kaplan, Hye Kyong Kweon, K. Murakami +2 more
2014RNA: A publication of the RNA Society11 citations Open access
Semantic Scholar
Structural basis for calcium-regulated relaxation of striated muscles at interaction sites of troponin with actin and tropomyosin.
K. Murakami, F. Yumoto, S. Ohki, T. Yasunaga +2 more
2007Advances in Experimental Medicine and Biology11 citations
Semantic Scholar
Dominant Negative Mutant Actins Identified in Flightless Drosophila Can Be Classified into Three Classes*
Taro Q. P. Noguchi, Yuki Gomibuchi, K. Murakami, H. Ueno +3 more
2009Journal of Biological Chemistry8 citations Open access
Semantic Scholar
Transient Prenyltransferase-Cyclase Association in Fusicoccadiene Synthase, an Assembly-Line Terpene Synthase
J. Faylo, T. van Eeuwen, K. Gupta, K. Murakami +1 more
2022Biochemistry7 citations
Semantic Scholar
Structure of TFIIH/Rad4-Rad23-Rad33 in damaged DNA opening in Nucleotide Excision Repair
T. van Eeuwen, Yoonjung Shim, H. Kim, Ting-Ting Zhao +5 more
2021bioRxiv2 citations Open access
Semantic Scholar
TFIIF and TFIIS Enhance the Mechanical Persistence of Transcript Elongation by RNA Polymerase II
V. Schweikhard, Cong A. Meng, K. Murakami, C. Kaplan +2 more
20142 citations Open access
Semantic Scholar
Murakami Complex Architecture of an RNA Polymerase II Transcription Pre-Initiation
K. Murakami, H. Elmlund, Nir Kalisman, D. Bushnell +8 more
20131 citations
Semantic Scholar
Cryo-EM structure of actin filament in the presence of phosphate
T. Wakabayshi, K. Murakami, T. Yasunaga, Taro Q. P. Noguchi +1 more
20101 citations
Semantic Scholar
Structure of Saccharomyces cerevisiae Mediator‐RNA polymerase II pre‐initiation complex for divergent transcription
Jose J Gorbea Colón, L. Palao, H. Kim, K. Tsai +2 more
2022The FASEB Journal0 citations
Semantic Scholar
Structural visualization of de novo initiation of RNA polymerase II transcription
Chun Yang, Rina Fujiwara, H. Kim, Jose J. Gorbea Colón +3 more
2021bioRxiv0 citations Open access
Semantic Scholar
CryoEM structure of Yeast TFIIK (Kin28/Ccl1/Tfb3) Complex
T. van Eeuwen, K. Murakami, Tao Li, K. Tsai
20210 citations
Semantic Scholar
Structure of TFIIH/Rad4-Rad23-Rad33/DNA in DNA opening
T. van Eeuwen, Jung-Hyun Min, K. Murakami
20210 citations
Semantic Scholar
Structure of TFIIH in TFIIH/Rad4-Rad23-Rad33 DNA opening complex
T. van Eeuwen, Jung-Hyun Min, K. Murakami
20210 citations
Semantic Scholar
Nucleotide Excision Repair complex TFIIH Rad4-33
T. van Eeuwen, K. Murakami
20210 citations
Semantic Scholar
Yeast TFIIK (Kin28/Ccl1/Tfb3) Complex
T. van Eeuwen, K. Murakami, Tao Li, K. Tsai
20210 citations
Semantic Scholar
Cryo-EM structure of unliganded octameric prenyltransferase domain of Phomopsis amygdali fusicoccadiene synthase
J. Faylo, T. van Eeuwen, K. Murakami, D. Christianson
20210 citations
Semantic Scholar

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T. van Eeuwen×15
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H. Kim×11
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R. Kornberg×9
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K. Tsai×8
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T. Wakabayashi×5

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Nir Kalisman×4

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Jung-Hyun Min×4

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D. Quon — researcher profile on SciRah