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Marcel Ramos · SciRah

Researcher profile · Semantic Scholar

Marcel Ramos

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Marcel Ramos — researcher profile on SciRah

h-index: 12
Works: 27
Citations: 1,185

Most-cited papers

Accessible, curated metagenomic data through ExperimentHub
E. Pasolli, L. Schiffer, Audrey Renson, Valerie Obenchain +10 more
2017Nature Methods506 citations Open access
Semantic Scholar
Toward a gold standard for benchmarking gene set enrichment analysis
L. Geistlinger, Gergely Csaba, M.T. Santarelli, Marcel Ramos +8 more
2020Briefings Bioinform.132 citations Open access
Semantic Scholar
Multi-omic analysis of subtype evolution and heterogeneity in high-grade serous ovarian carcinoma
L. Geistlinger, Sehyun Oh, Marcel Ramos, L. Schiffer +17 more
2019Cancer Research98 citations Open access
Semantic Scholar
Multiomic Integration of Public Oncology Databases in Bioconductor
Marcel Ramos, L. Geistlinger, Sehyun Oh, L. Schiffer +7 more
2020JCO Clinical Cancer Informatics89 citations Open access
Semantic Scholar
Software for the integration of multi-omics experiments in Bioconductor
Marcel Ramos, L. Schiffer, Angela Re, R. Azhar +16 more
2017bioRxiv70 citations Open access
Semantic Scholar
lefser: implementation of metagenomic biomarker discovery tool, LEfSe, in R
Asya Khleborodova, S. D. Gamboa-Tuz, Marcel Ramos, N. Segata +2 more
2024Bioinform.67 citations Open access
Semantic Scholar
Public data and open source tools for multi-assay genomic investigation of disease
L. Kannan, Marcel Ramos, Angela Re, N. El-Hachem +11 more
2015Briefings Bioinform.48 citations Open access
Semantic Scholar
HGNChelper: identification and correction of invalid gene symbols for human and mouse
Sehyun Oh, Jasmine Abdelnabi, Ragheed Al‐Dulaimi, Ayush Aggarwal +4 more
2020bioRxiv36 citations Open access
Semantic Scholar
HMP16SData: Efficient Access to the Human Microbiome Project through Bioconductor
L. Schiffer, R. Azhar, Lori A. Shepherd, Marcel Ramos +5 more
2018bioRxiv35 citations Open access
Semantic Scholar
CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes
V. D. da Silva, Marcel Ramos, M. Groenen, R. Crooijmans +6 more
2019Bioinform.30 citations Open access
Semantic Scholar
Reliable Analysis of Clinical Tumor-Only Whole-Exome Sequencing Data
Sehyun Oh, L. Geistlinger, Marcel Ramos, Martin T. Morgan +2 more
2019bioRxiv28 citations Open access
Semantic Scholar
The Doppelgänger Effect: Hidden Duplicates in Databases of Transcriptome Profiles.
L. Waldron, M. Riester, Marcel Ramos, G. Parmigiani +1 more
2016Journal of the National Cancer Institute18 citations Open access
Semantic Scholar
GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases
Sehyun Oh, L. Geistlinger, Marcel Ramos, D. Blankenberg +6 more
2022Nature Communications10 citations Open access
Semantic Scholar
Curated single cell multimodal landmark datasets for R/Bioconductor
Kelly B. Eckenrode, D. Righelli, Marcel Ramos, R. Argelaguet +8 more
2021bioRxiv8 citations Open access
Semantic Scholar
Global Alliance for Genomics and Health Meets Bioconductor: Toward Reproducible and Agile Cancer Genomics at Cloud Scale
V. Carey, Marcel Ramos, B. Stubbs, S. Gopaulakrishnan +4 more
2020JCO Clinical Cancer Informatics5 citations Open access
Semantic Scholar
Orchestrating a community-developed computational workshop and accompanying training materials
Sean R. Davis, Marcel Ramos, Lori A. Shepherd, Nitesh Turaga +4 more
2018F1000Research3 citations Open access
Semantic Scholar
GenomicSuperSignature: interpretation of RNA-seq experiments through robust, efficient comparison to public databases
Sehyun Oh, L. Geistlinger, Marcel Ramos, D. Blankenberg +6 more
2021bioRxiv2 citations Open access
Semantic Scholar
RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor
Marcel Ramos, Martin T. Morgan, L. Geistlinger, V. Carey +1 more
2023Bioinform.1 citations Open access
Semantic Scholar
Obstetricia integral siglo XXI. Tomo II
Diana Carolina Vargas Fiesco, Jorge Andrés Rubio Romero, Ariel Iván Ruiz Parra, Luis Martín Rodríguez +22 more
20201 citations
Semantic Scholar
SingleCellMultiModal: Integrating multi-modal single cell experiment datasets
Kelly B. Eckenrode, Marcel Ramos, D. Righelli, R. Argelaguet +3 more
20201 citations Open access
Semantic Scholar
The use of next generation sequencing technology in the identification of specific SNPs for breed assignment and traceability of animal products
Marcel Ramos, H. Megen, R. Crooijmans, L. Schook +1 more
20101 citations
Semantic Scholar
AnVILWorkflow: A runnable workflow package for Cloud-implemented bioinformatics analysis pipelines
Sehyun Oh, K. Gravel-Pucillo, Marcel Ramos, Sean Davis +3 more
2024Research Square0 citations Open access
Semantic Scholar
HCAMatrixBrowser: Accessing the Human Cell Atlas Data in Bioconductor
Marcel Ramos, Martin T. Morgan
20200 citations Open access
Semantic Scholar
Waldron et al. Reply to "Commentary on the HMP16SData Bioconductor Package".
L. Waldron, L. Schiffer, R. Azhar, Marcel Ramos +2 more
2019American Journal of Epidemiology0 citations Open access
Semantic Scholar
Multi-omic analysis supports a developmental hierarchy of molecular subtypes in high-grade serous ovarian carcinoma
L. Geistlinger, S. Oh, Marcel Ramos, L. Schiffer +10 more
20190 citations
Semantic Scholar
ogttMetrics: Data structures and algorithms for oral glucose tolerance tests
B. Stubbs, Keith Frankston, Marcel Ramos, N. Laranjo +2 more
2017F1000Research0 citations Open access
Semantic Scholar
Engagement of introductory biostatistics students in a novel hybrid course format
Marcel Ramos, Misato Gbedemah, H. Jones, L. Waldron
20160 citations Open access
Semantic Scholar

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