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J. Phue · SciRah

Researcher profile · Semantic Scholar

J. Phue

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J. Phue — researcher profile on SciRah

h-index: 17
Works: 36
Citations: 1,118

Most-cited papers

Glucose metabolism at high density growth of E. coli B and E. coli K: differences in metabolic pathways are responsible for efficient glucose utilization in E. coli B as determined by microarrays and Northern blot analyses.
J. Phue, S. Noronha, Ritabrata Hattacharyya, A. Wolfe +1 more
2005Biotechnology and Bioengineering158 citations
Semantic Scholar
Transcription levels of key metabolic genes are the cause for different glucose utilization pathways in E. coli B (BL21) and E. coli K (JM109).
J. Phue, J. Shiloach
2004Journal of Biotechnology114 citations
Semantic Scholar
Modified Escherichia coli B (BL21), a superior producer of plasmid DNA compared with Escherichia coli K (DH5alpha).
J. Phue, Sang-Jun Lee, L. Trinh, J. Shiloach
2008Biotechnology and Bioengineering95 citations
Semantic Scholar
SARS-CoV-2 B.1.1.7 (alpha) and B.1.351 (beta) variants induce pathogenic patterns in K18-hACE2 transgenic mice distinct from early strains
P. Radvák, H. Kwon, M. Kosikova, Uriel Ortega-Rodriguez +8 more
2021Nature Communications86 citations Open access
Semantic Scholar
Effect of methanol feeding strategies on production and yield of recombinant mouse endostatin from Pichia pastoris.
L. Trinh, J. Phue, J. Shiloach
2003Biotechnology and Bioengineering86 citations
Semantic Scholar
Longitudinal analysis reveals age-related changes in the T cell receptor repertoire of human T cell subsets
Xiaoping Sun, Thomas Nguyen, A. Achour, A. Ko +14 more
2022Journal of Clinical Investigation85 citations Open access
Semantic Scholar
Impact of dissolved oxygen concentration on acetate accumulation and physiology of E. coli BL21, evaluating transcription levels of key genes at different dissolved oxygen conditions.
J. Phue, J. Shiloach
2005Metabolic Engineering81 citations
Semantic Scholar
Targeting specificity of APOBEC-based cytosine base editor in human iPSCs determined by whole genome sequencing
Erica L. McGrath, Hyunsu Shin, Linyi Zhang, J. Phue +5 more
2019Nature Communications62 citations Open access
Semantic Scholar
Acetate accumulation through alternative metabolic pathways in ackA− pta− poxB− triple mutant in E. coli B (BL21)
J. Phue, Sang-Jun Lee, J. Kaufman, A. Negrete +1 more
2010Biotechnology Letters53 citations Open access
Semantic Scholar
Serologic Evidence of Ebolavirus Infection in a Population With No History of Outbreaks in the Democratic Republic of the Congo
S. Mulangu, Vivian H. Alfonso, N. Hoff, R. Doshi +11 more
2018Journal of Infectious Diseases43 citations Open access
Semantic Scholar
Trans-chalcone increases p53 activity via DNAJB1/HSP40 induction and CRM1 inhibition
Gabriel Silva, M. Marins, Nadda Chaichanasak, Yongdae Yoon +10 more
2018PLoS ONE42 citations Open access
Semantic Scholar
The role of Cra in regulating acetate excretion and osmotic tolerance in E. coli K-12 and E. coli B at high density growth
Young-Jin Son, J. Phue, L. Trinh, Sang-Jun Lee +1 more
2011Microbial Cell Factories42 citations Open access
Semantic Scholar
Reducing acetate excretion from E. coli K-12 by over-expressing the small RNA sgrS
A. Negrete, N. Majdalani, J. Phue, J. Shiloach
2011New Biotechnology29 citations Open access
Semantic Scholar
Novel reference genes in colorectal cancer identify a distinct subset of high stage tumors and their associated histologically normal colonic tissues
Lai Xu, Helen Luo, Rong Wang, Wells W. Wu +8 more
2019BMC Medical Genetics21 citations Open access
Semantic Scholar
NGS Evaluation of Colorectal Cancer Reveals Interferon Gamma Dependent Expression of Immune Checkpoint Genes and Identification of Novel IFNγ Induced Genes
Lai Xu, L. Pelosof, Rong Wang, Hugh I. Mcfarland +9 more
2020Frontiers in Immunology20 citations Open access
Semantic Scholar
Design of the Recombinant Influenza Neuraminidase Antigen Is Crucial for Its Biochemical Properties and Protective Efficacy
Jin Gao, Laura Klenow, L. Parsons, T. Malik +6 more
2021Journal of Virology18 citations Open access
Semantic Scholar
Evaluating microarrays using a semiparametric approach: application to the central carbon metabolism of Escherichia coli BL21 and JM109.
J. Phue, B. Kedem, Pratik Jaluria, J. Shiloach
2007Genomics18 citations Open access
Semantic Scholar
Robust Sub-nanomolar Library Preparation for High Throughput Next Generation Sequencing
Wells W. Wu, J. Phue, Chun-Ting Lee, Changyi A. Lin +4 more
2018BMC Genomics15 citations Open access
Semantic Scholar
B.1.1.7 and B.1.351 variants are highly virulent in K18-ACE2 transgenic mice and show different pathogenic patterns from early SARS-CoV-2 strains
P. Radvák, H. Kwon, M. Kosikova, Uriel Ortega-Rodriguez +8 more
2021bioRxiv9 citations Open access
Semantic Scholar
Analyzing the Role of Gut Microbiota on the Onset of Autoimmune Diseases Using TNFΔARE Murine Model
Vivienne Edwards, Dylan L Smith, F. Meylan, L. Tiffany +6 more
2021Microorganisms7 citations Open access
Semantic Scholar
Effect of restricted dissolved oxygen on expression of Clostridium difficile toxin A subunit from E. coli
Ashish K. Sharma, J. Phue, E. Khatipov, N. Dalal +2 more
2020Scientific Reports7 citations Open access
Semantic Scholar
Unveiling the sex bias: higher preexisting and neutralizing titers against AAV in females and implications for gene therapy
Stephanee Warrington, Trish T. Hoang, Morten Seirup, Leila Abdelhamid +5 more
2025Gene Therapy6 citations
Semantic Scholar
Therapeutic implications of synonymous gene recoding: Insights into mechanisms controlling protein biogenesis and activity.
Brian C. Lin, Katarzyna I. Jankowska, U. Katneni, Randilu Amarasinghe +15 more
2025Protein & Cell3 citations Open access
Semantic Scholar
Coordinated expression of acetyl CoA synthetase and the ace operon enzymes in Escherichia coli in preparation for adaptation to acetate.
M. El-Mansi, O. Afolabi, J. Phue, J. Shiloach
2022Microbiology3 citations Open access
Semantic Scholar
An Optimized Purification Design for Extracting Active ADAMTS13 from Conditioned Media
Katarzyna I. Jankowska, U. Katneni, Brian C. Lin, Randilu Amarasinghe +6 more
2022Processes3 citations Open access
Semantic Scholar
Improved Refolding of Recombinant Human Proinsulin from Escherichia coli in a Two-stage Reactor System
J. Phue, Sung-Jin Oh, Young-Jin Son, Yong-In Kim +5 more
20003 citations
Semantic Scholar
Design of the recombinant influenza neuraminidase antigen is crucial for protective efficacy
Jin Gao, Laura Klenow, L. Parsons, T. Malik +6 more
2021bioRxiv2 citations Open access
Semantic Scholar
Expression of the ace operon in Escherichia coli is triggered in response to growth rate-dependent flux-signal of ATP.
M. El-Mansi, J. Phue, J. Shiloach
2021FEMS Microbiology Letters2 citations Open access
Semantic Scholar
Exposure to TNF Antagonist Therapies Induces Variations of the Gut Microbiota in an in vivo Model Using Healthy Mice.
O. Gabay, Jonathan Vicenty, Autumn Zack-Taylor, L. Tiffany +9 more
2020Joint, bone, spine : revue du rhumatisme2 citations
Semantic Scholar
Screen-less expanded bed column: new approach for the recovery and purification of a malaria transmission blocking vaccine candidate from Pichia pastoris
L. Trinh, J. Phue, Pratik Jaluria, Chia-Wei W. Tsai +2 more
2006Biotechnology Letters2 citations
Semantic Scholar
Synonymous sequence design controls the folding, processing, and activity of the therapeutic protein ADAMTS13.
Katarzyna I. Jankowska, U. Katneni, Brian C. Lin, Hannah M. Brenner +19 more
2026Trends in Biotechnology0 citations Open access
Semantic Scholar
PB1316 Impact of Synonymous Gene Recoding on ADAMTS13
B. Lin, R. Amarasinghe, U. Katneni, K. Jankowska +13 more
2023Research and Practice in Thrombosis and Haemostasis0 citations Open access
Semantic Scholar
Clostridium difficile infection Risk factors and potential vaccines
J. Shiloach, Ashish K. Sharma, A. Sharma, J. Phue +13 more
2021Research Outreach0 citations Open access
Semantic Scholar
Subset distinct richness reduction and clonal expansion of human CD4+ and CD8+ αβ TCR repertoires with aging
A. Achour, Xiaoping Sun, Thomas Nguyen, A. Ko +14 more
2021Journal of Immunology0 citations
Semantic Scholar
Robust Sub-nanomolar Library Preparation for High Throughput Next Generation Sequencing
Wells W. Wu, J. Phue, Chun-Ting Lee, Changyi A. Lin +4 more
2018BMC Genomics0 citations Open access
Semantic Scholar
Effects of DNA Deletions and Insertions on Strand Exchange Reactions Mediated by E. coli RecA Protein
J. Phue, Tae-Ryong Hahn
1992Molecules and Cells0 citations Open access
Semantic Scholar

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