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E. Novoa · SciRah

Researcher profile · Semantic Scholar

E. Novoa

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E. Novoa — researcher profile on SciRah

h-index: 28
Works: 50
Citations: 4,224

Most-cited papers

“Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes”
D. Neafsey, R. Waterhouse, M. Abai, S. Aganezov +116 more
2014Science567 citations Open access
Semantic Scholar
The RNA modification landscape in human disease
Nicky Jonkhout, J. Tran, Martin A. Smith, N. Schonrock +2 more
2017RNA: A publication of the RNA Society532 citations Open access
Semantic Scholar
Accurate detection of m6A RNA modifications in native RNA sequences
Huanle Liu, Oguzhan Begik, Morghan C. Lucas, J. Ramirez +6 more
2019Nature Communications486 citations Open access
Semantic Scholar
Speeding with control: codon usage, tRNAs, and ribosomes.
E. Novoa, Lluís Ribas de Pouplana
2012Trends in Genetics332 citations
Semantic Scholar
Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing
Oguzhan Begik, Morghan C. Lucas, Leszek P. Pryszcz, J. Ramirez +9 more
2021Nature Biotechnology287 citations Open access
Semantic Scholar
A role for tRNA modifications in genome structure and codon usage.
E. Novoa, Mariana Pavon-Eternod, T. Pan, Lluís Ribas de Pouplana
2012Cell251 citations Open access
Semantic Scholar
Quantitative analysis of tRNA abundance and modifications by nanopore RNA sequencing
Morghan C. Lucas, Leszek P. Pryszcz, Rebeca Medina Amezcua, Ivan Milenkovic +5 more
2023Nature Biotechnology197 citations Open access
Semantic Scholar
High-throughput 5′ UTR engineering for enhanced protein production in non-viral gene therapies
Jicong Cao, E. Novoa, Zhi-Zhuo Zhang, William C. W. Chen +6 more
2020Nature Communications149 citations Open access
Semantic Scholar
Analyses of mRNA structure dynamics identify embryonic gene regulatory programs
Jean-Denis Beaudoin, E. Novoa, C. Vejnar, V. Yartseva +3 more
2018Nature Structural & Molecular Biology111 citations Open access
Semantic Scholar
Computational methods for RNA modification detection from nanopore direct RNA sequencing data
Mattia Furlan, Anna Delgado-Tejedor, Logan Mulroney, M. Pelizzola +2 more
2021RNA Biology101 citations Open access
Semantic Scholar
Molecular barcoding of native RNAs using nanopore sequencing and deep learning
Martin A. Smith, Tansel Ersavas, James M. Ferguson, Huanle Liu +5 more
2020Genome Research84 citations Open access
Semantic Scholar
Integrative analyses of the RNA modification machinery reveal tissue- and cancer-specific signatures
Oguzhan Begik, Morghan C. Lucas, Huanle Liu, J. Ramirez +2 more
2019Genome Biology80 citations Open access
Semantic Scholar
Long-read sequencing in the era of epigenomics and epitranscriptomics
Morghan C. Lucas, E. Novoa
2023Nature Methods77 citations
Semantic Scholar
Analogs of natural aminoacyl-tRNA synthetase inhibitors clear malaria in vivo
E. Novoa, N. Camacho, A. Tor, B. Wilkinson +10 more
2014Proceedings of the National Academy of Sciences of the United States of America72 citations Open access
Semantic Scholar
Ensemble Docking from Homology Models.
E. Novoa, L. R. de Pouplana, X. Barril, M. Orozco
2010Journal of Chemical Theory and Computation70 citations
Semantic Scholar
Elucidation of Codon Usage Signatures across the Domains of Life
E. Novoa, Irwin Jungreis, O. Jaillon, Manolis Kellis
2018bioRxiv63 citations Open access
Semantic Scholar
EpiNano: Detection of m6A RNA Modifications Using Oxford Nanopore Direct RNA Sequencing.
Huanle Liu, Oguzhan Begik, E. Novoa
2021Methods in molecular biology62 citations
Semantic Scholar
Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing
Oguzhan Begik, Gregor Diensthuber, Huanle Liu, Anna Delgado-Tejedor +7 more
2021bioRxiv58 citations Open access
Semantic Scholar
MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets
Luca Cozzuto, Huanle Liu, Leszek P. Pryszcz, Toni Hermoso Pulido +3 more
2020Frontiers in Genetics54 citations Open access
Semantic Scholar
Saturation of recognition elements blocks evolution of new tRNA identities
Adélaïde Saint-Léger, Carla Bello, P. Dans, A. G. Torres +5 more
2016Science Advances54 citations Open access
Semantic Scholar
Exploring the epitranscriptome by native RNA sequencing
Oguzhan Begik, J. Mattick, E. Novoa
2022RNA: A publication of the RNA Society50 citations Open access
Semantic Scholar
Dynamic interplay between RPL3- and RPL3L-containing ribosomes modulates mitochondrial activity in the mammalian heart
Ivan Milenkovic, Helaine Graziele Santos Vieira, Morghan C. Lucas, Jorge Ruiz-Orera +10 more
2021bioRxiv50 citations Open access
Semantic Scholar
Native RNA nanopore sequencing reveals antibiotic-induced loss of rRNA modifications in the A- and P-sites
Anna Delgado-Tejedor, Rebeca Medina Amezcua, Oguzhan Begik, Luca Cozzuto +4 more
2023bioRxiv45 citations Open access
Semantic Scholar
Charting the unknown epitranscriptome
E. Novoa, C. Mason, J. Mattick
2017Nature reviews. Molecular cell biology45 citations Open access
Semantic Scholar
CHIKV infection reprograms codon optimality to favor viral RNA translation by altering the tRNA epitranscriptome
J. Jungfleisch, R. Böttcher, Marc Talló-Parra, Gemma Pérez-Vilaró +3 more
2022Nature Communications43 citations Open access
Semantic Scholar
Homologous trans-editing factors with broad tRNA specificity prevent mistranslation caused by serine/threonine misactivation
Ziwei Liu, O. Vargas-Rodriguez, Yuki Goto, E. Novoa +3 more
2015Proceedings of the National Academy of Sciences of the United States of America43 citations Open access
Semantic Scholar
Selective Inhibition of an Apicoplastic Aminoacyl‐tRNA Synthetase from Plasmodium falciparum
Rob Hoen, E. Novoa, A. López, N. Camacho +8 more
2013ChemBioChem35 citations Open access
Semantic Scholar
Human tRNAs with inosine 34 are essential to efficiently translate eukarya-specific low-complexity proteins
A. G. Torres, Marta Rodríguez-Escribà, M. Marcet-Houben, Helaine Graziele Santos Vieira +10 more
2021Nucleic Acids Research34 citations Open access
Semantic Scholar
Comprehensive map of ribosomal 2′-O-methylation and C/D box snoRNAs in Drosophila melanogaster
Athena Sklias, S. Cruciani, V. Marchand, M. Spagnuolo +8 more
2023bioRxiv25 citations Open access
Semantic Scholar
Ancestral AlaX Editing Enzymes for Control of Genetic Code Fidelity Are Not tRNA-specific*
E. Novoa, O. Vargas-Rodriguez, S. Lange, Yuki Goto +3 more
2015Journal of Biological Chemistry20 citations Open access
Semantic Scholar
Mitochondrial Protein Synthesis and mtDNA Levels Coordinated through an Aminoacyl-tRNA Synthetase Subunit.
Daria Picchioni, Albert Antolin-Fontes, N. Camacho, Claus-A Schmitz +14 more
2019Cell Reports19 citations Open access
Semantic Scholar
ModPhred: an integrative toolkit for the analysis and storage of nanopore sequencing DNA and RNA modification data
Leszek P. Pryszcz, E. Novoa
2021bioRxiv17 citations Open access
Semantic Scholar
Nanopore Direct RNA Sequencing Data Processing and Analysis Using MasterOfPores.
Luca Cozzuto, Anna Delgado-Tejedor, Toni Hermoso Pulido, E. Novoa +1 more
2023Methods in molecular biology16 citations
Semantic Scholar
Subcellular relocalization and nuclear redistribution of the RNA methyltransferases TRMT1 and TRMT1L upon neuronal activation
Nicky Jonkhout, S. Cruciani, Helaine Graziele Santos Vieira, J. Tran +14 more
2020bioRxiv15 citations Open access
Semantic Scholar
Best practices for genome-wide RNA structure analysis: combination of mutational profiles and drop-off information
E. Novoa, Jean-Denis Beaudoin, A. Giráldez, J. Mattick +1 more
2017bioRxiv14 citations Open access
Semantic Scholar
De novo basecalling of m6A modifications at single molecule and single nucleotide resolution
S. Cruciani, Anna Delgado-Tejedor, Leszek P. Pryszcz, Rebeca Medina +2 more
2023bioRxiv12 citations Open access
Semantic Scholar
SwiSpot: modeling riboswitches by spotting out switching sequences
M. Barsacchi, E. Novoa, Manolis Kellis, A. Bechini
2016Bioinform.12 citations Open access
Semantic Scholar
High-performance nano-flow liquid chromatography column combined with high- and low-collision energy data-independent acquisition enables targeted and discovery identification of modified ribonucleotides by mass spectrometry.
G. Espadas, Julia Morales-Sanfrutos, Rebeca Medina Amezcua, Morghan C. Lucas +2 more
2022Journal of Chromatography A10 citations Open access
Semantic Scholar
Barcoding and demultiplexing Oxford Nanopore native RNA sequencing reads with deep residual learning
Martin A. Smith, Tansel Ersavas, James M. Ferguson, Huanle Liu +5 more
2019bioRxiv10 citations Open access
Semantic Scholar
Decoding ribosomal RNA modification dynamics at single molecule resolution
Oguzhan Begik, Morghan C. Lucas, J. Ramirez, I. Milenkovic +8 more
2020bioRxiv9 citations Open access
Semantic Scholar
Elucidation of the Epitranscriptomic RNA Modification Landscape of Chikungunya Virus
Belinda Baquero-Pérez, E. Bortoletto, U. Rosani, Anna Delgado-Tejedor +4 more
2024Viruses5 citations Open access
Semantic Scholar
Small Molecule Docking from Theoretical Structural Models
E. Novoa, L. R. de Pouplana, M. Orozco
20124 citations
Semantic Scholar
A genomics method to identify pathogenicity‐related proteins. Application to aminoacyl‐tRNA synthetase‐like proteins
E. Novoa, Manuel Castro de Moura, M. Orozco, Lluís Ribas de Pouplana
2010FEBS Letters4 citations
Semantic Scholar
Quantitative profiling of native RNA modifications and their dynamics using nanopore sequencing
Oguzhan Begik, Morghan C. Lucas, Leszek P. Pryszcz, J. Ramirez +9 more
20213 citations
Semantic Scholar
Cooperation for Better Inhibiting.
E. Novoa, Lluís Ribas de Pouplana
2015Chemistry and Biology3 citations Open access
Semantic Scholar
Enhanced detection of RNA modifications and mappability with high-accuracy nanopore RNA basecalling models
Gregor Diensthuber, Leszek P. Pryszcz, Laia Llovera, Morghan C. Lucas +5 more
2023bioRxiv2 citations Open access
Semantic Scholar
mRNA structure dynamics identifies the embryonic RNA regulome
Jean-Denis Beaudoin, E. Novoa, C. Vejnar, V. Yartseva +3 more
2018bioRxiv1 citations Open access
Semantic Scholar
Unbiased functional genetic screens reveal essential RNA modifications in human cancer and drug resistance
C. Pauli, M. Kienhöfer, M. Blank, Oguzhan Begik +21 more
2024bioRxiv0 citations Open access
Semantic Scholar
zzz2010/5UTR_Optimizer: v1.0
E. Novoa, Žžž
20210 citations
Semantic Scholar
Parallel and scalable workflow for the analysis of Oxford Nanopore direct RNA sequencing datasets
Luca Cozzuto, Huanle Liu, Leszek P. Pryszcz, Toni Hermoso Pulido +2 more
2019bioRxiv0 citations Open access
Semantic Scholar

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