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J. Revote · SciRah

Researcher profile · Semantic Scholar

J. Revote

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J. Revote — researcher profile on SciRah

h-index: 14
Works: 30
Citations: 1,145

Most-cited papers

iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data
Zhen Chen, Pei Zhao, Fuyi Li, T. Marquez-Lago +11 more
2019Briefings Bioinform.358 citations Open access
Semantic Scholar
POSSUM: a bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles
Jiawei Wang, Bingjia Yang, J. Revote, A. Leier +5 more
2017Bioinform.178 citations Open access
Semantic Scholar
DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites
Fuyi Li, Jinxiang Chen, A. Leier, T. Marquez-Lago +8 more
2019Bioinform.109 citations Open access
Semantic Scholar
Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods
Fuyi Li, Ya-Nan Wang, Chen Li, T. Marquez-Lago +14 more
2018Briefings Bioinform.92 citations Open access
Semantic Scholar
GlycoMinestruct: a new bioinformatics tool for highly accurate mapping of the human N-linked and O-linked glycoproteomes by incorporating structural features
Fuyi Li, Chen Li, J. Revote, Yang Zhang +4 more
2016Scientific Reports79 citations Open access
Semantic Scholar
ggVolcanoR: A Shiny app for customizable visualization of differential expression datasets
Kerry A. Mullan, Liesl Bramberger, Prithvi Raj Munday, Gabriel Goncalves +7 more
2021Computational and Structural Biotechnology Journal56 citations Open access
Semantic Scholar
SecretEPDB: a comprehensive web-based resource for secreted effector proteins of the bacterial types III, IV and VI secretion systems
Yi An, Jiawei Wang, Chen Li, J. Revote +7 more
2017Scientific Reports47 citations Open access
Semantic Scholar
MonaGO: a novel gene ontology enrichment analysis visualisation system
Ziyin Xin, Yu-Jun Cai, Louis T. Dang, Hannah Burke +6 more
2022BMC Bioinformatics37 citations Open access
Semantic Scholar
PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact
Fuyi Li, Cunshuo Fan, T. Marquez-Lago, A. Leier +9 more
2019bioRxiv36 citations Open access
Semantic Scholar
Styles of rifting and fault spacing in numerical models of crustal extension
W. Sharples, Louis Moresi, M. Jadamec, J. Revote
201530 citations Open access
Semantic Scholar
Predicting Proteolysis in Complex Proteomes Using Deep Learning
M. Ozols, A. Eckersley, C. Platt, Callum Stewart-McGuinness +8 more
2021International Journal of Molecular Sciences25 citations Open access
Semantic Scholar
Medically actionable pathogenic variants in a population of 13,131 healthy elderly individuals
P. Lacaze, R. Sebra, M. Riaz, J. Tiller +26 more
2020Genetics in Medicine20 citations Open access
Semantic Scholar
MetalExplorer, a Bioinformatics Tool for the Improved Prediction of Eight Types of Metal-Binding Sites Using a Random Forest Algorithm with Two- Step Feature Selection
Jiangning Song, Chen Li, Cheng Zheng, J. Revote +2 more
201720 citations
Semantic Scholar
TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets
Louis T. Dang, Markus Tondl, Man-Ho H. Chiu, J. Revote +17 more
2018BMC Genomics15 citations Open access
Semantic Scholar
Immunolyser: A web-based computational pipeline for analysing and mining immunopeptidomic data
Prithvi Raj Munday, Joshua Fehring, J. Revote, Kirti Pandey +8 more
2023Computational and Structural Biotechnology Journal9 citations Open access
Semantic Scholar
TCR_Explore: A novel webtool for T cell receptor repertoire analysis
Kerry A. Mullan, Justin B. Zhang, Claerwen M. Jones, S. Goh +6 more
2022bioRxiv9 citations Open access
Semantic Scholar
Resourcing, annotating, and analysing synthetic peptides of SARS‐CoV‐2 for immunopeptidomics and other immunological studies
Chen Li, J. Revote, Sri H. Ramarathinam, Shanzou Chung +9 more
2021Proteomics6 citations Open access
Semantic Scholar
Development of a cloud-based Bioinformatics Training Platform
J. Revote, Nathan S. Watson-Haigh, S. Quenette, B. Bethwaite +2 more
2016Briefings Bioinform.6 citations Open access
Semantic Scholar
HIVed, a knowledgebase for differentially expressed human genes and proteins during HIV infection, replication and latency
Chen Li, Sri H. Ramarathinam, J. Revote, G. Khoury +2 more
2017Scientific Reports4 citations Open access
Semantic Scholar
Towards an open, collaborative, reusable framework for sharing hands-on bioinformatics training workshops
Nathan S. Watson-Haigh, J. Revote, R. Suchecki, S. Tyagi +3 more
2016Briefings Bioinform.4 citations Open access
Semantic Scholar
BigFiRSt: A Software Program Using Big Data Technique for Mining Simple Sequence Repeats From Large-Scale Sequencing Data
Jinxiang Chen, Fuyi Li, Miao Wang, Junlong Li +6 more
2022Frontiers in Big Data1 citations Open access
Semantic Scholar
Predicting and validating protein degradation in proteomes using deep learning
M. Ozols, A. Eckersley, C. Platt, Callum S. McGuinness +8 more
2020bioRxiv1 citations Open access
Semantic Scholar
Medically actionable pathogenic variants in a population of 13,131 healthy elderly individuals
P. Lacaze, R. Sebra, M. Riaz, J. Tiller +26 more
2020Genetics in Medicine1 citations Open access
Semantic Scholar
MonaGO: a novel Gene Ontology enrichment analysis visualisation system
Ziyin Xin, Yujun Cai, Louis T. Dang, Hannah Burke +4 more
2020bioRxiv1 citations Open access
Semantic Scholar
Resilience to dominant genetic disease in the healthy elderly
P. Lacaze, R. Sebra, M. Riaz, J. Tiller +26 more
20191 citations Open access
Semantic Scholar
ngs-workshop_SYD-2015-05: Sydney May 2015 NGS Workshop
Nathan S. Watson-Haigh, Xi Li, J. Revote, tsonika +1 more
20150 citations
Semantic Scholar
Modelling in tomorrrow's technological landscape - Unveiling Underworld2
S. Quenette, Louis Moresi, J. Mansour, J. Revote
20150 citations
Semantic Scholar
ngs-handout: Just a quick test release
Nathan S. Watson-Haigh, Xi Li, J. Revote, tsonika +1 more
20150 citations
Semantic Scholar
btp-workshop-ngs: BTP-2015-12
Nathan S. Watson-Haigh, Xi Li, J. Revote, tsonika +1 more
20150 citations
Semantic Scholar
Towards Reproducible Scientific Benchmarking Workflows in Geophysics: the CREDO Toolkit
P. Sunter, W. Sharples, S. Quenette, Wendy Mason +1 more
20100 citations
Semantic Scholar

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