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J. Nielsen · SciRah

Researcher profile · Semantic Scholar

J. Nielsen

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J. Nielsen — researcher profile on SciRah

h-index: 58
Works: 173
Citations: 12K

Most-cited papers

Mass spectrometry in metabolome analysis.
S. Villas-Bôas, Sandrine Mas, Mats Åkesson, J. Smedsgaard +1 more
2005Mass spectrometry reviews (Print)607 citations
Semantic Scholar
Global metabolite analysis of yeast: evaluation of sample preparation methods
S. Villas-Bôas, Jesper Højer-Pedersen, Mats Åkesson, J. Smedsgaard +1 more
2005Yeast396 citations
Semantic Scholar
In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production.
Christoffer Bro, Birgitte Regenberg, J. Förster, J. Nielsen
2006Metabolic Engineering369 citations Open access
Semantic Scholar
Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering.
M. Asadollahi, J. Maury, K. Patil, M. Schalk +2 more
2009Metabolic Engineering232 citations
Semantic Scholar
Integration of gene expression data into genome-scale metabolic models.
Mats Åkesson, J. Förster, J. Nielsen
2004Metabolic Engineering222 citations
Semantic Scholar
Use of genome-scale microbial models for metabolic engineering.
K. Patil, Mats Åkesson, J. Nielsen
2004Current Opinion in Biotechnology181 citations Open access
Semantic Scholar
High-throughput metabolic state analysis: the missing link in integrated functional genomics of yeasts.
S. Villas-Bôas, J. Moxley, Mats Åkesson, G. Stephanopoulos +1 more
2005Biochemical Journal158 citations Open access
Semantic Scholar
Antibiotic Overproduction in Streptomyces coelicolor A3(2) Mediated by Phosphofructokinase Deletion*
I. Borodina, Jeroen Siebring, Jie Zhang, Colin P. Smith +3 more
2008Journal of Biological Chemistry147 citations Open access
Semantic Scholar
Improvement of Galactose Uptake in Saccharomyces cerevisiae through Overexpression of Phosphoglucomutase: Example of Transcript Analysis as a Tool in Inverse Metabolic Engineering
Christoffer Bro, S. Knudsen, Birgitte Regenberg, L. Olsson +1 more
2005Applied and Environmental Microbiology141 citations Open access
Semantic Scholar
Production of the polyketide 6-MSA in yeast engineered for increased malonyl-CoA supply.
Songsak Wattanachaisaereekul, A. Lantz, M. L. Nielsen, J. Nielsen
2008Metabolic Engineering113 citations Open access
Semantic Scholar
Impact of 'ome' analyses on inverse metabolic engineering.
Christoffer Bro, J. Nielsen
2004Metabolic Engineering112 citations
Semantic Scholar
Metabolic Engineering of Ammonium Assimilation in Xylose-Fermenting Saccharomyces cerevisiae Improves Ethanol Production
C. Roca, J. Nielsen, L. Olsson
2003Applied and Environmental Microbiology109 citations Open access
Semantic Scholar
Metabolic engineering of -lactam production
Jette Thykaer, J. Nielsen
2003106 citations
Semantic Scholar
Reconstruction of the central carbon metabolism of Aspergillus niger.
H. David, Mats Åkesson, J. Nielsen
2003European Journal of Biochemistry102 citations
Semantic Scholar
Manipulation of malic enzyme in Saccharomyces cerevisiae for increasing NADPH production capacity aerobically in different cellular compartments.
M. Moreira dos Santos, Vijayendran Raghevendran, P. Kotter, L. Olsson +1 more
2004Metabolic Engineering93 citations
Semantic Scholar
Enhanced citrate production through gene insertion in Aspergillus niger.
W. D. de Jongh, J. Nielsen
2008Metabolic Engineering84 citations
Semantic Scholar
Surface Hydrophobicity of Aspergillus nidulans Conidiospores and Its Role in Pellet Formation
J. Dynesen, J. Nielsen
2003Biotechnology progress (Print)84 citations
Semantic Scholar
Fungal metabolite analysis in genomics and phenomics.
Michael C. Jewett, G. Hofmann, J. Nielsen
2006Current Opinion in Biotechnology82 citations
Semantic Scholar
Sampling and Sample Preparation
S. Villas-Bôas, U. Roessner, M. A. E. Hansen, J. Smedsgaard +1 more
200682 citations
Semantic Scholar
Comparative metabolic network analysis of two xylose fermenting recombinant Saccharomyces cerevisiae strains.
Thomas Grotkjaer, P. Christakopoulos, J. Nielsen, L. Olsson
2005Metabolic Engineering82 citations
Semantic Scholar
Transcription analysis using high-density micro-arrays of Aspergillus nidulans wild-type and creA mutant during growth on glucose or ethanol.
J. Mogensen, H. Nielsen, G. Hofmann, J. Nielsen
2006Fungal Genetics and Biology81 citations
Semantic Scholar
Standard reporting requirements for biological samples in metabolomics experiments: microbial and in vitro biology experiments
M. J. van der Werf, R. Takors, J. Smedsgaard, J. Nielsen +8 more
2007Metabolomics77 citations Open access
Semantic Scholar
Yeast systems biology to unravel the network of life
Roberta Mustacchi, S. Hohmann, J. Nielsen
2006Yeast76 citations Open access
Semantic Scholar
Identification of In Vivo Enzyme Activities in the Cometabolism of Glucose and Acetate by Saccharomyces cerevisiae by Using 13C-Labeled Substrates
Margarida Moreira dos Santos, A. K. Gombert, B. Christensen, L. Olsson +1 more
2003Eukaryotic Cell76 citations Open access
Semantic Scholar
Systems Analysis Unfolds the Relationship between the Phosphoketolase Pathway and Growth in Aspergillus nidulans
G. Panagiotou, M. Andersen, Thomas Grotkjær, T. B. Regueira +3 more
2008PLoS ONE74 citations Open access
Semantic Scholar
Analysis of flux estimates based on (13)C-labelling experiments.
B. Christensen, A. K. Gombert, J. Nielsen
2002European Journal of Biochemistry72 citations Open access
Semantic Scholar
The roles of galactitol, galactose‐1‐phosphate, and phosphoglucomutase in galactose‐induced toxicity in Saccharomyces cerevisiae
W. A. de Jongh, Christoffer Bro, S. Ostergaard, Birgitte Regenberg +2 more
2008Biotechnology and Bioengineering65 citations
Semantic Scholar
Current status of systems biology in Aspergilli.
M. R. Andersen, J. Nielsen
2009Fungal Genetics and Biology62 citations Open access
Semantic Scholar
Increased glycopeptide production after overexpression of shikimate pathway genes being part of the balhimycin biosynthetic gene cluster.
Jette Thykaer, J. Nielsen, W. Wohlleben, T. Weber +3 more
2010Metabolic Engineering61 citations
Semantic Scholar
Metabolic Network Analysis of Streptomyces tenebrarius, a Streptomyces Species with an Active Entner-Doudoroff Pathway
I. Borodina, C. Schöller, A. Eliasson, J. Nielsen
2005Applied and Environmental Microbiology60 citations Open access
Semantic Scholar
Amplitude
S. Villas-Bôas, U. Roessner, M. A. E. Hansen, J. Smedsgaard +1 more
2020Definitions57 citations Open access
Semantic Scholar
Design and application of genome-scale reconstructed metabolic models.
I. Rocha, J. Förster, J. Nielsen
2008Methods in molecular biology55 citations
Semantic Scholar
Aerobic glucose metabolism of Saccharomyces kluyveri: growth, metabolite production, and quantification of metabolic fluxes.
K. Møller, B. Christensen, J. Förster, J. Piškur +2 more
2002Biotechnology and Bioengineering54 citations
Semantic Scholar
Branching is coordinated with mitosis in growing hyphae of Aspergillus nidulans.
J. Dynesen, J. Nielsen
2003Fungal Genetics and Biology52 citations
Semantic Scholar
Adsorption and interfacial electron transfer of Saccharomyces cerevisiae yeast cytochrome c monolayers on Au(111) electrodes
A. Hansen, A. Boisen, J. Nielsen, H. Wackerbarth +4 more
200351 citations
Semantic Scholar
Ontogeny and characterization of blood leukocyte subsets and serum proteins in piglets before and after weaning.
H. Juul-Madsen, K. Jensen, J. Nielsen, B. Damgaard
2010Veterinary Immunology and Immunopathology49 citations Open access
Semantic Scholar
Aerobic physiology of redox-engineered Saccharomyces cerevisiae strains modified in the ammonium assimilation for increased NADPH availability.
M. Moreira dos Santos, G. Thygesen, P. Kotter, L. Olsson +1 more
2003FEMS Yeast Research48 citations Open access
Semantic Scholar
Phenotypic characterization of glucose repression mutants of Saccharomyces cerevisiae using experiments with 13C‐labelled glucose
Vijayendran Raghevendran, A. K. Gombert, B. Christensen, P. Kotter +1 more
2004Yeast47 citations
Semantic Scholar
CreA influences the metabolic fluxes of Aspergillus nidulans during growth on glucose and xylose.
H. David, A. Krogh, C. Roca, Mats Åkesson +1 more
2005Microbiology46 citations Open access
Semantic Scholar
Mathematical modeling of proteome constraints within metabolism
Yu Chen, J. Nielsen
202145 citations Open access
Semantic Scholar
Characterization of the Mucor circinelloides life cycle by on‐line image analysis
T. Lübbehüsen, J. Nielsen, M. McIntyre
2003Journal of Applied Microbiology45 citations Open access
Semantic Scholar
Hap4 Is Not Essential for Activation of Respiration at Low Specific Growth Rates in Saccharomyces cerevisiae*
Vijayendran Raghevendran, K. Patil, L. Olsson, J. Nielsen
2006Journal of Biological Chemistry44 citations Open access
Semantic Scholar
Genetic and biological characterisation of an avian-like H1N2 swine influenza virus generated by reassortment of circulating avian-like H1N1 and H3N2 subtypes in Denmark
R. Trebbien, K. Bragstad, L. Larsen, J. Nielsen +5 more
2013Virology Journal43 citations Open access
Semantic Scholar
Heterologous production of non-ribosomal peptide LLD-ACV in Saccharomyces cerevisiae.
V. Siewers, Xiao Chen, Le Huang, Jie Zhang +1 more
2009Metabolic Engineering42 citations Open access
Semantic Scholar
Temporary CD8+ T-Cell Depletion in Pigs Does Not Exacerbate Infection with Porcine Reproductive and Respiratory Syndrome Virus (PRRSV)
L. Lohse, J. Nielsen, L. Eriksen
2004Viral immunology41 citations
Semantic Scholar
Genome‐wide transcriptional response of a Saccharomyces cerevisiae strain with an altered redox metabolism
Christoffer Bro, Birgitte Regenberg, J. Nielsen
2004Biotechnology and Bioengineering41 citations
Semantic Scholar
Lipase production by recombinant strains of Aspergillus niger expressing a lipase-encoding gene from Thermomyces lanuginosus
W. Prathumpai, S. Flitter, M. McIntyre, J. Nielsen
2004Applied Microbiology and Biotechnology40 citations Open access
Semantic Scholar
Biosynthesis of glyoxylate from glycine in Saccharomyces cerevisiae.
S. Villas-Bôas, Mats Åkesson, J. Nielsen
2005FEMS Yeast Research38 citations Open access
Semantic Scholar
Metabolic network analysis on Phaffia rhodozyma yeast using 13C-labeled glucose and gas chromatography-mass spectrometry.
C. Cannizzaro, B. Christensen, J. Nielsen, U. von Stockar
2004Metabolic Engineering38 citations Open access
Semantic Scholar
Identification of the Entner–Doudoroff pathway in an antibiotic‐producing actinomycete species
Nina Gunnarsson, U. Mortensen, M. Sosio, J. Nielsen
2004Molecular Microbiology37 citations Open access
Semantic Scholar

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L. Olsson×10
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L. Olsson — researcher profile on SciRah
Mats Åkesson×8
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Mats Åkesson — researcher profile on SciRah
S. Villas-Bôas×6
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J. Smedsgaard×5
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Christoffer Bro

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B. Christensen×5

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Birgitte Regenberg×4

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