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C. Loiseau · SciRah

Researcher profile · Semantic Scholar

C. Loiseau

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C. Loiseau — researcher profile on SciRah

h-index: 23
Works: 47
Citations: 2,705

Most-cited papers

Oral Phage Therapy of Acute Bacterial Diarrhea With Two Coliphage Preparations: A Randomized Trial in Children From Bangladesh
S. Sarker, S. Sultana, G. Reuteler, D. Moine +17 more
2016EBioMedicine498 citations Open access
Semantic Scholar
Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues
C. Meehan, G. Goig, T. Kohl, Lennert Verboven +37 more
2019Nature Reviews Microbiology391 citations
Semantic Scholar
A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region
J. Ngabonziza, C. Loiseau, M. Marceau, A. Jouet +21 more
2020Nature Communications182 citations Open access
Semantic Scholar
Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history
Mireia Coscollá, S. Gagneux, F. Menardo, C. Loiseau +25 more
2020bioRxiv170 citations Open access
Semantic Scholar
Red squirrels in the British Isles are infected with leprosy bacilli
C. Avanzi, J. del-Pozo, Andrej Benjak, K. Stevenson +14 more
2016Science169 citations Open access
Semantic Scholar
A New Phylogenetic Framework for the Animal-Adapted Mycobacterium tuberculosis Complex
D. Brites, C. Loiseau, F. Menardo, S. Borrell +9 more
2018bioRxiv162 citations Open access
Semantic Scholar
Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity
F. Menardo, C. Loiseau, D. Brites, Mireia Coscollá +6 more
2018BMC Bioinformatics157 citations Open access
Semantic Scholar
Phylogenomics and antimicrobial resistance of the leprosy bacillus Mycobacterium leprae
Andrej Benjak, C. Avanzi, Pushpendra Singh, C. Loiseau +39 more
2018Nature Communications109 citations Open access
Semantic Scholar
Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development
S. Borrell, Andrej Trauner, D. Brites, L. Rigouts +10 more
2018bioRxiv77 citations Open access
Semantic Scholar
Whole-Genome Sequencing for Drug Resistance Profile Prediction in Mycobacterium tuberculosis
Sebastian M. Gygli, P. Keller, M. Ballif, Nicolas Blöchliger +13 more
2018Antimicrobial Agents and Chemotherapy76 citations Open access
Semantic Scholar
Ecology, global diversity and evolutionary mechanisms in the Mycobacterium tuberculosis complex
G. Goig, E. Windels, C. Loiseau, Christoph Stritt +4 more
2025Nature Reviews Microbiology67 citations
Semantic Scholar
Prisons as ecological drivers of fitness-compensated multidrug-resistant Mycobacterium tuberculosis
Sebastian M. Gygli, C. Loiseau, L. Jugheli, Natia Adamia +11 more
2021Nature Medicine63 citations Open access
Semantic Scholar
The relative transmission fitness of multidrug-resistant Mycobacterium tuberculosis in a drug resistance hotspot
C. Loiseau, E. Windels, Sebastian M. Gygli, L. Jugheli +16 more
2023Nature Communications61 citations Open access
Semantic Scholar
Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis
Joshua L. Payne, F. Menardo, Andrej Trauner, S. Borrell +4 more
2018bioRxiv58 citations Open access
Semantic Scholar
The Genetic Background Modulates the Evolution of Fluoroquinolone-Resistance in Mycobacterium tuberculosis
Rhastin A. D. Castro, A. Ross, L. Kamwela, M. Reinhard +5 more
2019Molecular biology and evolution53 citations Open access
Semantic Scholar
An African origin for Mycobacterium bovis
C. Loiseau, F. Menardo, A. Aseffa, Elena Hailu +8 more
2019bioRxiv52 citations Open access
Semantic Scholar
Whole genome sequencing distinguishes between relapse and reinfection in recurrent leprosy cases
M. M. Stefani, C. Avanzi, S. Bührer-Sékula, Andrej Benjak +19 more
2017PLoS Neglected Tropical Diseases49 citations Open access
Semantic Scholar
Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim
F. Menardo, L. Rutaihwa, M. Zwyer, S. Borrell +37 more
2020bioRxiv48 citations Open access
Semantic Scholar
Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches
I. Otchere, Mireia Coscollá, L. Sánchez-Busó, A. Asante-Poku +24 more
2018Scientific Reports42 citations Open access
Semantic Scholar
Mortality from drug-resistant tuberculosis in high-burden countries comparing routine drug susceptibility testing with whole-genome sequencing: a multicentre cohort study
Kathrin Zürcher, Martina L. Reichmuth, M. Ballif, C. Loiseau +18 more
2021The Lancet Microbe37 citations Open access
Semantic Scholar
The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand
Marian Morales, Vladimir Sentchilo, C. Bertelli, Andrea Komljenovic +31 more
2016PLoS ONE32 citations Open access
Semantic Scholar
Transmission of Drug-Resistant Leprosy in Guinea-Conakry Detected Using Molecular Epidemiological Approaches.
C. Avanzi, Philippe Busso, Andrej Benjak, C. Loiseau +11 more
2016Clinical Infectious Diseases31 citations Open access
Semantic Scholar
Whole Genome Sequencing and Spatial Analysis Identifies Recent Tuberculosis Transmission Hotspots in Ghana
P. Asare, I. Otchere, Edmund Bedeley, D. Brites +11 more
2020Frontiers in Medicine25 citations Open access
Semantic Scholar
Transmission is a Key Driver of Resistance to the New Tuberculosis Drugs
G. Goig, C. Loiseau, N. Maghradze, K. Mchedlishvili +9 more
2025New England Journal of Medicine21 citations Open access
Semantic Scholar
Tuberculosis in Swiss captive Asian elephants: microevolution of Mycobacterium tuberculosis characterized by multilocus variable-number tandem-repeat analysis and whole-genome sequencing
G. Ghielmetti, Mireia Coscollá, M. Ruetten, U. Friedel +5 more
2017Scientific Reports19 citations Open access
Semantic Scholar
Revised Interpretation of the Hain Lifescience GenoType MTBC To Differentiate Mycobacterium canettii and Members of the Mycobacterium tuberculosis Complex
C. Loiseau, D. Brites, I. Moser, F. Coll +10 more
2019Antimicrobial Agents and Chemotherapy17 citations Open access
Semantic Scholar
Natural Polymorphisms in Mycobacterium tuberculosis Conferring Resistance to Delamanid in Drug-Naive Patients
Martina L. Reichmuth, Rico Hömke, Kathrin Zürcher, P. Sander +12 more
2020Antimicrobial Agents and Chemotherapy15 citations Open access
Semantic Scholar
HIV Coinfection Is Associated with Low-Fitness rpoB Variants in Rifampicin-Resistant Mycobacterium tuberculosis
C. Loiseau, D. Brites, M. Reinhard, Kathrin Zürcher +17 more
2020Antimicrobial Agents and Chemotherapy11 citations Open access
Semantic Scholar
Genomic epidemiological analysis identifies high relapse among individuals with recurring tuberculosis and provides evidence of recent household-related transmission of tuberculosis in Ghana
P. Asare, Stephen Osei-Wusu, N. A. Baddoo, Edmund Bedeley +12 more
2021International Journal of Infectious Diseases7 citations Open access
Semantic Scholar
Variability in intrinsic drug tolerance in Mycobacterium tuberculosis corresponds with phylogenetic lineage
Valerie F. A. March, M. Zwyer, C. Loiseau, D. Brites +7 more
2025bioRxiv4 citations Open access
Semantic Scholar
Onset of infectiousness explains differences in transmissibility across Mycobacterium tuberculosis lineages
E. Windels, Cecilia Valenzuela Agüí, B. D. de Jong, C. Meehan +7 more
2024bioRxiv4 citations Open access
Semantic Scholar
Linking genetic and phenotypic bedaquiline resistance in Mycobacterium tuberculosis strains from Georgia
N. Maghradze, C. Loiseau, G. Goig, N. Bablishvili +6 more
2025PLoS ONE2 citations Open access
Semantic Scholar
Clinical and bacterial determinants of unfavorable tuberculosis treatment outcomes: an observational study in Georgia
G. Goig, C. Loiseau, N. Maghradze, K. Mchedlishvili +11 more
2025medRxiv2 citations Open access
Semantic Scholar
Clinical and bacterial determinants of unfavorable tuberculosis treatment outcomes: an observational study in Georgia
G. Goig, C. Loiseau, N. Maghradze, K. Mchedlishvili +11 more
2025Genome Medicine2 citations Open access
Semantic Scholar
The Evolution of Fluoroquinolone-Resistance in Mycobacterium tuberculosis is Modulated by the Genetic Background
Rhastin A. D. Castro, A. Ross, L. Kamwela, M. Reinhard +5 more
2019bioRxiv2 citations Open access
Semantic Scholar
Transmission is a key driver of extensively drug-resistant tuberculosis.
G. Goig, C. Loiseau, N. Maghradze, K. Mchedlishvili +9 more
2024medRxiv1 citations Open access
Semantic Scholar
sequencing for routine verification of pyrazinamide resistance in Mycobacterium
C. Loiseau, D. Brites, I. Moser, F. Coll +11 more
20191 citations
Semantic Scholar
Stringent proteogenomic discovery of novel small proteins in Mycobacterium tuberculosis clinical reference strains
B. Heiniger, Christian Schori, Mohammad Arefian, Amir Banaei‐Esfahani +9 more
2026bioRxiv0 citations Open access
Semantic Scholar
Evolutionary dynamics of the insertion sequence IS6110 in the Mycobacterium tuberculosis complex
Christoph Stritt, C. Loiseau, S. Kalkan, S. Borrell +2 more
2026bioRxiv0 citations Open access
Semantic Scholar
Epistasis between drug resistance-conferring mutations in Mycobacterium tuberculosis
Selim Bouaouina, S. Borrell, Jérôme Azizaj, T. Bock +9 more
2025bioRxiv0 citations Open access
Semantic Scholar
1 Mortality of Drug-resistant Tuberculosis in High-burden Countries: 2 Comparison of Routine Drug Susceptibility Testing with Whole-genome 3 Sequencing 4
Martina L. Reichmuth, Kathrin Zürcher, M. Ballif, C. Loiseau +17 more
20200 citations
Semantic Scholar
1 Mortality of Drug-resistant Tuberculosis in High-burden Countries: 2 Comparison of Routine Drug Susceptibility Testing with Whole-genome 3 Sequencing
Martina L. Reichmuth, Kathrin Zürcher, M. Ballif, C. Loiseau +17 more
20200 citations
Semantic Scholar
Mortality of Drug-resistant Tuberculosis in High-burden Countries: Comparison of Routine Drug Susceptibility Testing with Whole-genome Sequencing
Martina L. Reichmuth, Kathrin Zürcher, M. Ballif, C. Loiseau +18 more
2020medRxiv0 citations Open access
Semantic Scholar
The Evolution of Fluoroquinolone-Resistance in Mycobacterium tuberculosis is 5 Modulated by the Genetic Background
Rhastin A. D. Castro, Amanda Ross, L. Kamwela, M. Reinhard +5 more
20190 citations
Semantic Scholar
Revised interpretation of the Hain Lifescience GenoType MTBC to differentiate Mycobacterium canettii and members of the M. tuberculosis complex
C. Loiseau, D. Brites, Irmgard Moser, F. Coll +11 more
20190 citations
Semantic Scholar
Tuberculosis in Swiss captive Asian elephants: microevolution of Mycobacterium tuberculosis characterized by multilocus variable-number tandem-repeat analysis and whole-genome sequencing
G. Ghielmetti, Mireia Coscollá, M. Ruetten, U. Friedel +5 more
2017Scientific Reports0 citations Open access
Semantic Scholar
Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests different ecological niches
I. Otchere, Mireia Coscollá, L. Sánchez-Busó, A. Asante-Poku +24 more
2017bioRxiv0 citations Open access
Semantic Scholar

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