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H. Shindo · SciRah

Researcher profile · Semantic Scholar

H. Shindo

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H. Shindo — researcher profile on SciRah

h-index: 31
Works: 152
Citations: 2,995

Most-cited papers

Mitochondria-specific RNA-modifying Enzymes Responsible for the Biosynthesis of the Wobble Base in Mitochondrial tRNAs
N. Umeda, Takeo Suzuki, M. Yukawa, Y. Ohya +3 more
2005Journal of Biological Chemistry216 citations Open access
Semantic Scholar
Solution structure of the DNA binding domain of a nucleoid‐associated protein, H‐NS, from Escherichia coli
H. Shindo, Takanobu Iwaki, Ryoichi Ieda, H. Kurumizaka +5 more
1995FEBS Letters140 citations Open access
Semantic Scholar
DNA-fiber EPR study of the orientation of Cu(II) complexes of 1,10-phenanthroline and its derivatives bound to DNA: mono(phenanthroline)-copper(II) and its ternary complexes with amino acids.
M. Chikira, Yuji Tomizawa, Dai Fukita, T. Sugizaki +6 more
2002Journal of Inorganic Biochemistry139 citations
Semantic Scholar
Analytical separation of tea catechins and food-related polyphenols by high-speed counter-current chromatography.
A. Yanagida, Atsushi Shoji, Y. Shibusawa, H. Shindo +3 more
2006Journal of Chromatography A98 citations
Semantic Scholar
NMR Structure of the N-terminal Domain of SUMO Ligase PIAS1 and Its Interaction with Tumor Suppressor p53 and A/T-rich DNA Oligomers*
S. Okubo, F. Hara, Y. Tsuchida, S. Shimotakahara +6 more
2004Journal of Biological Chemistry95 citations Open access
Semantic Scholar
Retention behavior of oligomeric proanthocyanidins in hydrophilic interaction chromatography.
A. Yanagida, Hirokazu Murao, M. Ohnishi-Kameyama, Y. Yamakawa +5 more
2007Journal of Chromatography A89 citations
Semantic Scholar
Identification of the DNA binding surface of H‐NS protein from Escherichia coli by heteronuclear NMR spectroscopy
H. Shindo, Ayumi Ohnuki, Hiroyuki Ginba, E. Katoh +3 more
1999FEBS Letters74 citations Open access
Semantic Scholar
Destabilization of nucleosomes by an unusual DNA conformation adopted by poly(dA)·poly(dT) tracts in vivo
M. Shimizu, T. Mori, T. Sakurai, H. Shindo
200060 citations Open access
Semantic Scholar
Temperature dependence and sequence specificity of DNA triplex formation: An analysis using isothermal titration calorimetry
M. Kamiya, H. Torigoe, H. Shindo, A. Sarai
199657 citations
Semantic Scholar
NMR study of the structures of repeated sequences, GAGXGA (X = S, Y, V), in Bombyx mori liquid silk.
Yu Suzuki, T. Yamazaki, Akihiro Aoki, H. Shindo +1 more
2014Biomacromolecules55 citations
Semantic Scholar
High precision NMR structure of YhhP, a novel Escherichia coli protein implicated in cell division.
E. Katoh, T. Hatta, H. Shindo, Yuko Ishii +3 more
2000Journal of Molecular Biology42 citations
Semantic Scholar
Three-phase solvent systems for comprehensive separation of a wide variety of compounds by high-speed counter-current chromatography.
Y. Shibusawa, Y. Yamakawa, Ryoko Noji, A. Yanagida +2 more
2006Journal of Chromatography A41 citations
Semantic Scholar
Preferential binding of E.coli histone-like protein HUα to negatively supercoiled DNA
H. Shindo, A. Furubayashi, M. Shimizu, M. Miyake +1 more
199239 citations Open access
Semantic Scholar
Solution structures and DNA binding properties of the N‐terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa
R. Suzuki, H. Shindo, A. Tase, Y. Kikuchi +2 more
2009Proteins: Structure, Function, and Bioinformatics38 citations Open access
Semantic Scholar
How amino acids control the binding of Cu(II) ions to DNA. Part III. A novel interaction of a histidine complex with DNA.
Ryoichi Nagane, M. Chikira, Masaru Oumi, H. Shindo +1 more
2000Journal of Inorganic Biochemistry37 citations
Semantic Scholar
Structure and Dynamic Properties of a Ti-Binding Peptide Bound to TiO2 Nanoparticles As Accessed by (1)H NMR Spectroscopy.
Yu Suzuki, H. Shindo, T. Asakura
2016Journal of Physical Chemistry B34 citations
Semantic Scholar
Crystal structure and molecular dynamics simulation of ubiquitin-like domain of murine parkin.
K. Tomoo, Yasuhiro Mukai, Y. In, H. Miyagawa +4 more
2008Biochimica et Biophysica Acta33 citations Open access
Semantic Scholar
Deletion of the yhhP Gene Results in Filamentous Cell Morphology in Escherichia coli
Yuko Ishii, Hisami Yamada, T. Yamashino, K. Ohashi +4 more
2000Bioscience, biotechnology and biochemistry33 citations
Semantic Scholar
Aqueous-aqueous two-phase systems composed of low molecular weight of polyethylene glycols and dextrans for counter-current chromatographic purification of proteins.
Y. Shibusawa, Naoko Takeuchi, Kazusa Sugawara, A. Yanagida +2 more
2006Journal of chromatography. B, Analytical technologies in the biomedical and life sciences31 citations
Semantic Scholar
Separation of Apple Catechin Oligomers by CCC
Y. Shibusawa, A. Yanagida, H. Shindo, Y. Ito
200331 citations
Semantic Scholar
Comprehensive separation of secondary metabolites in natural products by high-speed counter-current chromatography using a three-phase solvent system.
A. Yanagida, Y. Yamakawa, Ryoko Noji, Ako Oda +3 more
2007Journal of Chromatography A29 citations
Semantic Scholar
Effect of Sequence-Directed Nucleosome Disruption on Cell-Type-Specific Repression by α2/Mcm1 in the Yeast Genome
Nobuyuki Morohashi, Yuichi Yamamoto, Shunsuke Kuwana, Wataru Morita +3 more
2006Eukaryotic Cell29 citations Open access
Semantic Scholar
Genomic footprinting of the yeast zinc finger protein Rme1p and its roles in repression of the meiotic activator IME1.
M. Shimizu, Wei-Shi Li, Peter A. Covitz, Masae Hara +2 more
1998Nucleic Acids Research28 citations Open access
Semantic Scholar
Simulation study on the disordered state of an Alzheimer's β amyloid peptide Aβ(12–36) in water consisting of random‐structural, β‐structural, and helical clusters
Jinzen Ikebe, N. Kamiya, J. Ito, H. Shindo +1 more
2007Protein Science27 citations Open access
Semantic Scholar
How amino acids control the binding of Cu(II) ions to DNA: I—The role of the hydroxyl group of serine and threonine in fixing the orientation of the complexes
W. Harada, T. Nojima, A. Shibayama, H. Ueda +2 more
199626 citations
Semantic Scholar
Transcriptional repression at a distance through exclusion of activator binding in vivo.
M. Shimizu, Wei-Shi Li, H. Shindo, A. Mitchell
1997Proceedings of the National Academy of Sciences of the United States of America23 citations Open access
Semantic Scholar
Letter to the Editor: NMR structure of ubiquitin-like domain in PARKIN: Gene product of familial Parkinson's disease
M. Tashiro, S. Okubo, S. Shimotakahara, H. Hatanaka +4 more
2003Journal of Biomolecular NMR22 citations
Semantic Scholar
Functional domains of Escherichia coli single-stranded DNA binding protein as assessed by analyses of the deletion mutants.
Takashi Kinebuchi, H. Shindo, H. Nagai, N. Shimamoto +1 more
1997Biochemistry22 citations
Semantic Scholar
Analysis of Polyphenols from Hop Bract Region Using CCC
M. Kurumatani, Rumi Fujita, M. Tagashira, T. Shoji +7 more
200520 citations
Semantic Scholar
Determination of Log Po/w for Catechins and Their Isomers, Oligomers, and Other Organic Compounds by Stationary Phase Controlled High‐Speed Countercurrent Chromatography
Y. Shibusawa, Atsushi Shoji, A. Yanagida, H. Shindo +3 more
200520 citations
Semantic Scholar
The linker histone homolog Hho1p from Saccharomyces cerevisiae represents a winged helix-turn-helix fold as determined by NMR spectroscopy.
K. Ono, O. Kusano, S. Shimotakahara, M. Shimizu +2 more
2003Nucleic Acids Research20 citations Open access
Semantic Scholar
Yeast Ume6p repressor permits activator binding but restricts TBP binding at the HOP1 promoter.
M. Shimizu, Keiko Takahashi, Teresa M. Lamb, H. Shindo +1 more
2003Nucleic Acids Research17 citations Open access
Semantic Scholar
Purification of glucosyltransferase from cell-lysate of Streptococcus mutans by counter-current chromatography using aqueous polymer two-phase system.
A. Yanagida, Mitsuhiro Isozaki, Y. Shibusawa, H. Shindo +1 more
2004Journal of chromatography. B, Analytical technologies in the biomedical and life sciences16 citations
Semantic Scholar
Purification of single-strand DNA binding protein from an Escherichia coli lysate using counter-current chromatography, partition and precipitation.
Y. Shibusawa, Yohko Ino, T. Kinebuchi, M. Shimizu +2 more
2003Journal of chromatography. B, Analytical technologies in the biomedical and life sciences16 citations
Semantic Scholar
SEPARATION OF CHICKEN EGG WHITE PROTEINS BY HIGH-SPEED COUNTERCURRENT CHROMATOGRAPHY
Y. Shibusawa, S. Iino, H. Shindo, Y. Ito
200116 citations
Semantic Scholar
Destabilization of nucleosomes by an unusual DNA conformation adopted by poly(dA) small middle dotpoly(dT) tracts in vivo.
M. Shimizu, T. Mori, T. Sakurai, H. Shindo
2000EMBO Journal16 citations
Semantic Scholar
Preferential binding of E.coli histone-like protein HU alpha to negatively supercoiled DNA.
H. Shindo, A. Furubayashi, M. Shimizu, M. Miyake +1 more
1992Nucleic Acids Research16 citations
Semantic Scholar
Effects of triplet repeat sequences on nucleosome positioning and gene expression in yeast minichromosomes.
Nobuyuki Tomita, R. Fujita, Daichi Kurihara, H. Shindo +2 more
2002Nucleic acids research. Supplement15 citations Open access
Semantic Scholar
Electron spin resonance study of the binding structures of cationic water-soluble metalloporphyrins on highly oriented deoxyribonucleic acid fibres
M. Chikira, S. Suda, T. Nakabayashi, Y. Fujiwara +4 more
199514 citations
Semantic Scholar
Application of 13C-labeling and nuclear magnetic resonance spectroscopy to pharmacokinetic research: measurement of metabolic rate of benzoic acid to hippuric acid in the rat.
K. Akira, N. Takagi, S. Takeo, H. Shindo +1 more
1993Analytical Biochemistry14 citations
Semantic Scholar
PHD finger of the SUMO ligase Siz/PIAS family in rice reveals specific binding for methylated histone H3 at lysine 4 and arginine 2
H. Shindo, R. Suzuki, W. Tsuchiya, Misako Taichi +2 more
2012FEBS Letters12 citations Open access
Semantic Scholar
Conformational sampling of a 40-residue protein consisting of α and β secondary-structure elements in explicit solvent
Jinzen Ikebe, N. Kamiya, H. Shindo, Haruki Nakamura +1 more
200712 citations
Semantic Scholar
Counter-current chromatographic estimation of hydrophobicity of Z-(cis) and E-(trans) enalapril and kinetics of cis/trans isomerization.
Atsushi Shoji, A. Yanagida, H. Shindo, Y. Ito +1 more
2007Journal of Chromatography A12 citations
Semantic Scholar
One-step purification of histone deacetylase from Escherichia coli cell-lysate by counter-current chromatography using aqueous two-phase system.
Y. Shibusawa, Naoko Takeuchi, Kanako Tsutsumi, Shigeru Nakano +3 more
2007Journal of Chromatography A12 citations
Semantic Scholar
Rapid and simple determination of epoxyeicosatrienoic acids in rabbit renal artery by reversed-phase HPLC with fluorescence detection.
H. Honda, Y. Shibusawa, J. Taniguchi, H. Matsuda +5 more
2005Vascular pharmacology12 citations
Semantic Scholar
Countercurrent Chromatographic Purification of Polysaccharides from Achyranthes bidentata with an Aqueous Two‐Phase System Using a Cross‐Axis Coil Planet Centrifuge
Zhimao Chao, Y. Shibusawa, H. Shindo, Y. Ito
200312 citations
Semantic Scholar
Binding sites and structure of peptides bound to SiO2 nanoparticles studied by solution NMR spectroscopy
Yu Suzuki, H. Shindo
2018Polymer journal11 citations
Semantic Scholar
Thermal unfolding of ribonuclease T1 studied by multi-dimensional NMR spectroscopy
H. Matsuura, S. Shimotakahara, Chiseko Sakuma, M. Tashiro +5 more
2004Biological chemistry11 citations
Semantic Scholar
Purification of alcohol dehydrogenase from bovine liver crude extract by dye-ligand affinity counter-current chromatography.
Y. Shibusawa, T. Fujiwara, H. Shindo, Y. Ito
2004Journal of chromatography. B, Analytical technologies in the biomedical and life sciences10 citations
Semantic Scholar
Nuclear magnetic spectra of self complementary decanucleotides in solution; base sequence effect on the chemical shifts of nonexchangeable protons.
H. Shindo, Shigetoshi Okhubo, Ushiho Matsumoto, C. Giessner-Prettre +1 more
1988Journal of Biomolecular Structure and Dynamics7 citations
Semantic Scholar

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