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A. Ooi · SciRah

Researcher profile · Semantic Scholar

A. Ooi

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A. Ooi — researcher profile on SciRah

h-index: 17
Works: 57
Citations: 1,928

Most-cited papers

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects
E. Mereu, Atefeh Lafzi, C. Moutinho, C. Ziegenhain +36 more
2020Nature Biotechnology429 citations Open access
Semantic Scholar
Single cell mutation analysis of clonal evolution in myeloid malignancies
Linde A. Miles, Robert L. Bowman, Tiffany Merlinsky, Isabelle Csete +20 more
2020Nature425 citations Open access
Semantic Scholar
Novel Stem/Progenitor Cell Population from Murine Tracheal Submucosal Gland Ducts with Multipotent Regenerative Potential
A. Hegab, V. Ha, Jennifer L. Gilbert, K. Zhang +8 more
2011Stem Cells138 citations Open access
Semantic Scholar
Molecular Pathways: Targeting Cellular Energy Metabolism in Cancer via Inhibition of SLC2A1 and LDHA
A. Ooi, B. Gomperts
2015Clinical Cancer Research120 citations Open access
Semantic Scholar
Direct detection of double-stranded DNA: Molecular methods and applications for DNA diagnostics.
I. Ghosh, Cliff I. Stains, A. Ooi, D. Segal
2006Molecular Biosystems101 citations Open access
Semantic Scholar
Isolation and In Vitro Characterization of Basal and Submucosal Gland Duct Stem/Progenitor Cells from Human Proximal Airways
A. Hegab, V. Ha, Daphne O. Darmawan, Jennifer L. Gilbert +5 more
2012Stem Cells Translational Medicine94 citations Open access
Semantic Scholar
DNA sequence-enabled reassembly of the green fluorescent protein.
Cliff I. Stains, Jason R. Porter, A. Ooi, D. Segal +1 more
2005Journal of the American Chemical Society82 citations
Semantic Scholar
Molecular profiling of premalignant lesions in lung squamous cell carcinomas identifies mechanisms involved in stepwise carcinogenesis
A. Ooi, A. Gower, K. Zhang, Jessica Vick +10 more
2014Cancer Prevention Research79 citations Open access
Semantic Scholar
Simple Method To Prepare Oligonucleotide-Conjugated Antibodies and Its Application in Multiplex Protein Detection in Single Cells.
Hai-Biao Gong, Ilona N. Holcomb, A. Ooi, Xiao-Hui Wang +3 more
2016Bioconjugate chemistry73 citations Open access
Semantic Scholar
Novel DNA Bis-intercalation by MLN944, a Potent Clinical Bisphenazine Anticancer Drug*
Ji-Xun Dai, C. Punchihewa, P. Mistry, A. Ooi +1 more
2004Journal of Biological Chemistry72 citations Open access
Semantic Scholar
Presence of a putative tumor-initiating progenitor cell population predicts poor prognosis in smokers with non-small cell lung cancer
A. Ooi, V. Mah, D. Nickerson, Jennifer L. Gilbert +16 more
2010Cancer Research57 citations Open access
Semantic Scholar
Sequence-enabled reassembly of beta-lactamase (SEER-LAC): a sensitive method for the detection of double-stranded DNA.
A. Ooi, Cliff I. Stains, I. Ghosh, D. Segal
2006Biochemistry51 citations Open access
Semantic Scholar
Personalized Single-Cell Proteogenomics to Distinguish Acute Myeloid Leukemia from Non-Malignant Clonal Hematopoiesis
Laura W. Dillon, Jack Y. Ghannam, C. Nosiri, G. Gui +23 more
2020medRxiv36 citations Open access
Semantic Scholar
Identification of an interleukin 13-induced epigenetic signature in allergic airway inflammation.
A. Ooi, Sonal Ram, A. Kuo, Jennifer L. Gilbert +5 more
2012American journal of translational research36 citations
Semantic Scholar
Aldehyde Dehydrogenase Activity Enriches for Proximal Airway Basal Stem Cells and Promotes Their Proliferation
A. Hegab, V. Ha, B. Bisht, Daphne O. Darmawan +9 more
2014Stem Cells and Development31 citations Open access
Semantic Scholar
Single-cell protein-mRNA correlation analysis enabled by multiplexed dual-analyte co-detection
Hai-Biao Gong, Xiao-Hui Wang, Benjamin Liu, S. Boutet +6 more
2017Scientific Reports30 citations Open access
Semantic Scholar
Fluidic Logic Used in a Systems Approach to Enable Integrated Single-Cell Functional Analysis
N. Ramalingam, B. Fowler, L. Szpankowski, A. Leyrat +33 more
2016Frontiers in Bioengineering and Biotechnology22 citations Open access
Semantic Scholar
High-Throughput Multimodal Single-Cell Targeted DNA and Surface Protein Analysis Using the Mission Bio Tapestri Platform.
D. Ruff, Dalia M. Dhingra, K. Thompson, Jacqueline Marin +1 more
2021Methods in molecular biology16 citations
Semantic Scholar
Single cell mutational profiling delineates clonal trajectories in myeloid malignancies
Linde A. Miles, Robert L. Bowman, Tiffany Merlinsky, Isabelle Csete +17 more
2020bioRxiv15 citations Open access
Semantic Scholar
Silencing the Snail-dependent RNA splice regulator ESRP1 drives malignant transformation of human pulmonary epithelial cells
Tonya Walser, Zhe Jing, Linh M. Tran, Ying Q. Lin +15 more
2018Cancer Research12 citations Open access
Semantic Scholar
Single-Cell Dosing and mRNA Sequencing of Suspension and Adherent Cells Using the PolarisTM System.
Chad D. Sanada, A. Ooi
2019Methods in molecular biology5 citations
Semantic Scholar
Corrigendum: Fluidic Logic Used in a Systems Approach to Enable Integrated Single-Cell Functional Analysis
N. Ramalingam, B. Fowler, L. Szpankowski, A. Leyrat +33 more
2017Frontiers in Bioengineering and Biotechnology3 citations Open access
Semantic Scholar
Simultaneous Targeted Detection of Proteins and RNAs in Single Cells.
A. Ooi, D. Ruff
2019Methods in molecular biology2 citations
Semantic Scholar
Abstract 833: Linking phenotype and genotype: Multimodal analysis of surface proteins, intracellular proteins, and SNV in single cells
Prithvi Singh, Saurabh Parikh, Tim Lai, Dalia M. Dhingra +1 more
2022Cancer Research1 citations
Semantic Scholar
Simultaneous DNA, RNA, and Protein Analysis from Single Cells Using a High-Throughput Microfluidic Workflow for Resolution of Genotype-to-Phenotype Modalities.
Dalia M. Dhingra, A. Ooi, D. Ruff
2021Methods in molecular biology1 citations
Semantic Scholar
Single Cell DNA Sequencing Identifies Combinatorial Mutation Patterns and Clonal Architecture in Myeloid Malignancies
Linde A. Miles, Robert L. Bowman, Tiffany Merlinsky, A. Ooi +11 more
2019Blood1 citations
Semantic Scholar
A method for detecting protein expression in single cells using the C1™ Single-Cell Auto Prep System (TECH2P.874)
C. Egidio, A. Ooi, Ilona N. Holcomb, D. Ruff +3 more
2014Journal of Immunology1 citations
Semantic Scholar
Illustrating Heterogeneity in AML By Leveraging Multimodal Analysis of DNA, Surface Proteins, and Intracellular Proteins in Single Cells
Prithvi Singh, Dalia M. Dhingra, Saurabh Parikh, A. Sciambi +1 more
2022Blood0 citations Open access
Semantic Scholar
AML-160 Multimodal Analysis of DNA, Surface Proteins, and Intracellular Proteins in Single Cells.
Prithvi Singh, Dalia M. Dhingra, Saurabh Parikh, Tim Lai +2 more
2022Clinical Lymphoma, Myeloma & Leukemia0 citations
Semantic Scholar
Abstract 2259: Single-cell multi-omics analysis of SNV, CNV, and protein expression
A. Ooi, Dalia M. Dhingra, A. Sciambi, K. Thompson +4 more
2021Molecular and Cellular Biology/Genetics0 citations
Semantic Scholar
Abstract 2261: A multimodal single-cell workflow to interrogate cellular responses to cancer therapy
Dalia M. Dhingra, A. Ooi, Alex Li, A. Sciambi +3 more
2021Molecular and Cellular Biology/Genetics0 citations
Semantic Scholar
Abstract 246: Method to analyze mutational and phenotypic profiles from single cell for clonal evolution
Saurabh Parikh, M. Manivannan, Jacqueline Marin, K. Thompson +5 more
2021Bioinformatics and Systems Biology0 citations
Semantic Scholar
Abstract LB-316: Innovative multimodal single-cell workflow to interrogate cellular responses to cancer therapy
D. Ruff, Dalia M. Dhingra, P. Méndez, A. Ooi +2 more
2020Bioinformatics, Convergence Science, and Systems Biology0 citations
Semantic Scholar
CHAPTER 5. Microfluidic Applications in Single-cell Genomic, Transcriptomic and Proteomic Analysis
Dalia M. Dhingra, A. Ooi, P. Méndez, Shu Wang +3 more
20200 citations
Semantic Scholar
Abstract 219: A high throughput single-cell workflow for paired genomic and phenotypic analysis
Dalia M. Dhingra, P. Méndez, A. Ooi, Shu Wang +3 more
2020Molecular and Cellular Biology / Genetics0 citations
Semantic Scholar
Abstract 5910: Single-cell multiomic analysis of SNV, CNV, and protein expression
A. Ooi, P. Méndez, Dalia M. Dhingra, Nigel P. Beard +1 more
2020Molecular and Cellular Biology / Genetics0 citations
Semantic Scholar
Abstract 2506: Simultaneous DNA, RNA and protein analysis from single cells using a high-throughput microfluidic workflow for resolution of genotype-to-phenotype modalities
P. Méndez, Dalia M. Dhingra, A. Ooi, Shu Wang +8 more
2020Molecular and Cellular Biology / Genetics0 citations
Semantic Scholar
Combined Single-Cell DNA Genotyping and Protein Quantification (DAb-seq) in Acute Myeloid Leukemias Reveals Distinct Immunophenotypic Subsets Among Pathogenic Clones
B. Demaree, C. Delley, Cheryl A. Cohler Peretz, H. Vasudevan +4 more
2019Blood0 citations Open access
Semantic Scholar
Improved single T cell mRNA and TCR α and β chain detection using optimized chemistry and dead cell quality control for RNA-seq on the Fluidigm C1 system
C. Egidio, A. Ooi, Michael L. Gonzales, Joel P. Brockman +4 more
2017Journal of Immunology0 citations
Semantic Scholar
Abstract 4497: Single-cell protein-mRNA co-detection to reveals subpopulation-specific correlation patterns
Hai-Biao Gong, Xiao-Hui Wang, Benjamin Liu, Ilona N. Holcomb +4 more
20170 citations
Semantic Scholar
Abstract B18: A simple method to prepare oligonucleotide-conjugated antibodies for multiplex protein detection
Hai-Biao Gong, Ilona N. Holcomb, A. Ooi, Xiao-Hui Wang +3 more
20160 citations
Semantic Scholar
Abstract 5170: Snail-dependent ESRP1 silencing drives malignant conversion of human pulmonary epithelial cells
Tonya Walser, Zhe Jing, Linh Tran, Ying Q. Lin +10 more
20160 citations
Semantic Scholar
Abstract LB-147: Simultaneous profiling of mRNA and protein in single human induced pluripotent stem cells
Benjamin Liu, G. Dakshinamoorthy, Hai-Biao Gong, A. Ooi +4 more
20160 citations
Semantic Scholar
Abstract 1063: Examining early events in carcinogenesis by profiling premalignant lesions in the airways of patients with lung squamous cell carcinomas.
A. Ooi, A. Gower, K. Zhang, Jessica Vick +9 more
20130 citations
Semantic Scholar
Original Article Identification of an interleukin 13-induced epigenetic signature in allergic airway inflammation
A. Ooi, Sonal Ram, A. Kuo, Jennifer L. Gilbert +4 more
20120 citations
Semantic Scholar
Isolation And Characterization Of Sphere-Forming Cells From Human Upper Airway Surface Epithelium And Submucosal Glands
A. Hegab, V. Ha, B. Bisht, Jennifer L. Gilbert +4 more
2012Asian Test Symposium0 citations
Semantic Scholar
Repair And Regeneration Of The Tracheal Epithelium And Submucosal Glands After Hypoxic-Ischemic Injury
A. Hegab, V. Ha, Jennifer L. Gilbert, D. Nickerson +2 more
2011Asian Test Symposium0 citations
Semantic Scholar
A Novel Stem/Progenitor Cell Population From Murine Tracheal Submucosal Gland Ducts With Multipotent Regenerative Potential
A. Hegab, V. Ha, Jennifer L. Gilbert, K. Zhang +6 more
2011Asian Test Symposium0 citations Open access
Semantic Scholar
Abstract 4299: Poor prognosis in smokers with non-small cell lung cancer correlates with the presence of a reparative progenitor cell population
A. Ooi, V. Mah, D. Nickerson, Jennifer L. Gilbert +14 more
20100 citations
Semantic Scholar
Characterization And Isolation Of Cellular Subpopulations In Mouse Proximal Airway Epithelium And Submucosal Glands
A. Hegab, V. Ha, Jennifer L. Gilbert, A. Ooi +2 more
2010Asian Test Symposium0 citations
Semantic Scholar

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Dalia M. Dhingra×12
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