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P. Porebski · SciRah

Researcher profile · Semantic Scholar

P. Porebski

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P. Porebski — researcher profile on SciRah

h-index: 24
Works: 118
Citations: 2,823

Most-cited papers

CheckMyMetal: a macromolecular metal-binding validation tool
Heping Zheng, D. Cooper, P. Porebski, I. Shabalin +2 more
2017Acta Crystallographica Section D: Structural Biology287 citations Open access
Semantic Scholar
The United States COVID-19 Forecast Hub dataset
E. Cramer, Yu-Xin Huang, Yi-Jin Wang, E. L. Ray +424 more
2021Scientific Data160 citations Open access
Semantic Scholar
Modeling of Future COVID-19 Cases, Hospitalizations, and Deaths, by Vaccination Rates and Nonpharmaceutical Intervention Scenarios — United States, April–September 2021
R. Borchering, C. Viboud, Emily Howerton, Clair Smith +56 more
2021MMWR. Morbidity and mortality weekly report159 citations Open access
Semantic Scholar
Serum albumins - unusual allergens
M. Chruszcz, K. Mikołajczak, N. Mank, K. Majorek +2 more
2013Biochimica et Biophysica Acta111 citations Open access
Semantic Scholar
A public database of macromolecular diffraction experiments.
M. Grabowski, K. Langner, M. Cymborowski, P. Porebski +7 more
2016Acta Crystallographica Section D: Structural Biology90 citations Open access
Semantic Scholar
Molecular basis for phosphospecific recognition of histone H3 tails by Survivin paralogues at inner centromeres
E. Niedzialkowska, Fang-Wei Wang, P. Porebski, W. Minor +2 more
2012Molecular Biology of the Cell69 citations Open access
Semantic Scholar
Evaluation of the US COVID-19 Scenario Modeling Hub for informing pandemic response under uncertainty
Emily Howerton, Lucie Contamin, Luke C. Mullany, Michelle M. Qin +79 more
2023Nature Communications62 citations Open access
Semantic Scholar
Detect, Correct, Retract: How to manage incorrect structural models
A. Wlodawer, Z. Dauter, P. Porebski, W. Minor +5 more
2017The FEBS Journal59 citations Open access
Semantic Scholar
Testosterone meets albumin – the molecular mechanism of sex hormone transport by serum albumins
M. Czub, B. Venkataramany, K. Majorek, K. Handing +7 more
2018Chemical Science49 citations Open access
Semantic Scholar
Protein purification and crystallization artifacts: The tale usually not told
E. Niedzialkowska, O. Gasiorowska, K. Handing, Karolina A. Majorek +5 more
2016Protein Science47 citations Open access
Semantic Scholar
Refining the macromolecular model – achieving the best agreement with the data from X-ray diffraction experiment
I. Shabalin, P. Porebski, W. Minor
2018Crystallography Reviews39 citations Open access
Semantic Scholar
All Models Are Useful: Bayesian Ensembling for Robust High Resolution COVID-19 Forecasting
A. Adiga, Lijing Wang, Benjamin Hurt, A. Peddireddy +4 more
2021medRxiv38 citations Open access
Semantic Scholar
Impact of SARS-CoV-2 vaccination of children ages 5–11 years on COVID-19 disease burden and resilience to new variants in the United States, November 2021–March 2022: a multi-model study
R. Borchering, L. Mullany, Emily Howerton, Matteo Chinazzi +59 more
2022The Lancet Regional Health - Americas34 citations Open access
Semantic Scholar
Evaluating the impact of international airline suspensions on the early global spread of COVID-19
A. Adiga, S. Venkatramanan, J. Schlitt, A. Peddireddy +25 more
2020medRxiv34 citations Open access
Semantic Scholar
Molstack—Interactive visualization tool for presentation, interpretation, and validation of macromolecules and electron density maps
P. Porebski, Piotr Sroka, Heping Zheng, D. Cooper +1 more
2018Protein Science34 citations Open access
Semantic Scholar
Automatic recognition of ligands in electron density by machine learning
Marcin Kowiel, D. Brzeziński, P. Porebski, I. Shabalin +2 more
2018Bioinform.30 citations Open access
Semantic Scholar
Crystal structure of thebaine 6-O-demethylase from the morphine biosynthesis pathway.
A. Kluza, E. Niedzialkowska, K. Kurpiewska, Z. Wojdyla +4 more
2018Journal of Structural Biology30 citations Open access
Semantic Scholar
Fitmunk: improving protein structures by accurate, automatic modeling of side-chain conformations
P. Porebski, M. Cymborowski, M. Pasenkiewicz-Gierula, W. Minor
2016Acta Crystallographica Section D: Structural Biology29 citations Open access
Semantic Scholar
Challenges of COVID-19 Case Forecasting in the US, 2020–2021
V. Lopez, E. Cramer, Robert Pagano, John M. Drake +105 more
2024PLoS Comput. Biol.28 citations Open access
Semantic Scholar
The Integrated Resource for Reproducibility in Macromolecular Crystallography: Experiences of the first four years
M. Grabowski, M. Cymborowski, P. Porebski, T. Osinski +3 more
2019Structural Dynamics26 citations Open access
Semantic Scholar
Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support
Parantapa Bhattacharya, Jiang-Zhuo Chen, Stefan Hoops, D. Machi +19 more
2022The international journal of high performance computing applications20 citations Open access
Semantic Scholar
A Gcn5-Related N‑Acetyltransferase (GNAT) Capable of Acetylating Polymyxin B and Colistin Antibiotics in Vitro
M. Czub, Brian Zhang, M. Chiarelli, K. Majorek +7 more
2018Biochemistry19 citations Open access
Semantic Scholar
Alternaria alternata allergen Alt a 1: a unique beta-barrel protein dimer found exclusively in fungi.
M. Chruszcz, M. Chapman, T. Osinski, Robert Solberg +5 more
201219 citations
Semantic Scholar
Projected resurgence of COVID-19 in the United States in July—December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccination
S. Truelove, Clair Smith, Michelle M. Qin, L. Mullany +56 more
2022eLife15 citations Open access
Semantic Scholar
Recognizing and validating ligands with CheckMyBlob
D. Brzeziński, P. Porebski, Marcin Kowiel, J. Macnar +1 more
2021Nucleic Acids Res.15 citations Open access
Semantic Scholar
A study on the structure, mechanism, and biochemistry of kanamycin B dioxygenase (KanJ)—an enzyme with a broad range of substrates
B. Mrugala, A. Miłaczewska, P. Porebski, E. Niedzialkowska +3 more
2020The FEBS Journal15 citations Open access
Semantic Scholar
Structural characterization of H. pylori dethiobiotin synthetase reveals differences between family members
P. Porebski, M. Klimecka, M. Chruszcz, R. Nicholls +8 more
2012The FEBS Journal14 citations Open access
Semantic Scholar
Detecting anomalies in X-ray diffraction images using convolutional neural networks
A. Czyzewski, Faustyna Krawiec, D. Brzeziński, P. Porebski +1 more
2021Expert systems with applications13 citations Open access
Semantic Scholar
Informing pandemic response in the face of uncertainty. An evaluation of the U.S. COVID-19 Scenario Modeling Hub
Emily Howerton, Lucie Contamin, L. Mullany, Michelle M. Qin +79 more
2023medRxiv12 citations Open access
Semantic Scholar
AI-Driven Agent-Based Models to Study the Role of Vaccine Acceptance in Controlling COVID-19 Spread in the US
Parantapa Bhattacharya, D. Machi, Jiang-Zhuo Chen, Stefan Hoops +14 more
20212021 IEEE International Conference on Big Data (Big Data)11 citations Open access
Semantic Scholar
Phase-Informed Bayesian Ensemble Models Improve Performance of COVID-19 Forecasts
A. Adiga, G. Kaur, Lijing Wang, Benjamin Hurt +4 more
2023AAAI Conference on Artificial Intelligence10 citations Open access
Semantic Scholar
Regioselectivity of hyoscyamine 6β-hydroxylase-catalysed hydroxylation as revealed by high-resolution structural information and QM/MM calculations
A. Kluza, Z. Wojdyla, B. Mrugala, K. Kurpiewska +5 more
2020Dalton Transactions10 citations Open access
Semantic Scholar
Molstack: A platform for interactive presentations of electron density and cryo‐EM maps and their interpretations
P. Porebski, Grzegorz Bokota, B. Venkataramany, W. Minor
2019Protein Science9 citations Open access
Semantic Scholar
Crystal structures of putative phosphoglycerate kinases from B. anthracis> and C. jejuni
Heping Zheng, E. Filippova, K. Tkaczuk, Piotr Dworzynski +9 more
2012Journal of Structural and Functional Genomics8 citations Open access
Semantic Scholar
Scenario Projections of COVID-19 Burden in the US, 2024-2025
S. Loo, Sung-Mok Jung, Lucie Contamin, Emily Howerton +40 more
2025JAMA Network Open7 citations Open access
Semantic Scholar
Enhancing COVID-19 Ensemble Forecasting Model Performance Using Auxiliary Data Sources
A. Adiga, G. Kaur, Benjamin Hurt, Lijing Wang +4 more
20222022 IEEE International Conference on Big Data (Big Data)6 citations
Semantic Scholar
Crystal structure of Bovine Serum Albumin
K. Majorek, P. Porebski, M. Chruszcz, S. Almo +1 more
20126 citations
Semantic Scholar
Data-driven mechanistic framework with stratified immunity and effective transmissibility for COVID-19 scenario projections
P. Porebski, S. Venkatramanan, A. Adiga, Brian D. Klahn +6 more
2024Epidemics5 citations Open access
Semantic Scholar
State-of-the-Art Data Management: Improving the Reproducibility, Consistency, and Traceability of Structural Biology and in Vitro Biochemical Experiments
D. Cooper, M. Grabowski, M. Zimmerman, P. Porebski +19 more
2020Methods in molecular biology5 citations
Semantic Scholar
Databases, Repositories and Other Data Resources in Structural Biology
Heping Zheng, P. Porebski, M. Grabowski, D. Cooper +1 more
2017Methods in molecular biology5 citations
Semantic Scholar
Novel multi-cluster workflow system to support real-time HPC-enabled epidemic science: Investigating the impact of vaccine acceptance on COVID-19 spread
Parantapa Bhattacharya, D. Machi, Jiang-Zhuo Chen, Stefan Hoops +14 more
2024J. Parallel Distributed Comput.4 citations Open access
Semantic Scholar
SYNTHETIC DATA TO SUPPORT US-UK PRIZE CHALLENGE FOR DEVELOPING PRIVACY ENHANCING METHODS: PREDICTING INDIVIDUAL INFECTION RISK DURING A PANDEMIC
Galen Harrison, Jiang-Zhuo Chen, H. Mortveit, Stefan Hoops +7 more
20232 citations
Semantic Scholar
Adaptive multi-model ensembles for improved epidemic projections and decision support
S. Fiandrino, D. Paolotti, C. Bay, Matteo Chinazzi +41 more
2026medRxiv1 citations Open access
Semantic Scholar
Synthetic Information and Digital Twins for Pandemic Science: Challenges and Opportunities
Galen Harrison, P. Porebski, Jiang-Zhuo Chen, Mandy L. Wilson +8 more
2023International Conference on Trust, Privacy and Security in Intelligent Systems and Applications1 citations
Semantic Scholar
Potential impact of annual vaccination with reformulated COVID-19 vaccines: lessons from the U.S. COVID-19 Scenario Modeling Hub
Sung-Mok Jung, Sara L. Loo, Emily Howerton, Lucie Contamin +56 more
2023medRxiv1 citations Open access
Semantic Scholar
A Multi-Team Multi-Model Collaborative Covid-19 Forecasting Hub for India
A. Adiga, Benjamin Hurt, G. Kaur, Bryan L. Lewis +13 more
2023Online World Conference on Soft Computing in Industrial Applications1 citations Open access
Semantic Scholar
Impact of SARS-CoV-2 vaccination of children ages 5–11 years on COVID-19 disease burden and resilience to new variants in the United States, November 2021-March 2022: a multi-model study
R. Borchering, Luke C. Mullany, Emily Howerton, Matteo Chinazzi +59 more
2022medRxiv0 citations Open access
Semantic Scholar
The Integrated Resource for Reproducibility in Molecular Crystallography: experiences of the first five years
M. Grabowski, M. Cymborowski, D. Cooper, P. Porebski +1 more
2021Acta Crystallographica Section A: Foundations and Advances0 citations Open access
Semantic Scholar
On substrate-binding cavity of hyoscyamine 6β-hydroxylase from devil's trumpet
A. Kluza, B. Mrugala, K. Kurpiewska, P. Porebski +5 more
2021Acta Crystallographica Section A: Foundations and Advances0 citations Open access
Semantic Scholar
The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus in complex with nickel, ribostamycin B and 2-oxoglutarate
B. Mrugala, P. Porebski, E. Niedzialkowska, W. Minor +1 more
20200 citations
Semantic Scholar

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