Researcher profile · Semantic Scholar

Tomáš Dršata

h-index: 13
Works: 24
Citations: 567

Most-cited papers

Long-timescale dynamics of the Drew–Dickerson dodecamer
P. Dans, L. Danilāne, Iván Ivani, Tomáš Dršata +8 more
2016Nucleic Acids Research99 citations Open access
Semantic Scholar
Structure, Stiffness and Substates of the Dickerson-Drew Dodecamer
Tomáš Dršata, Alberto Pérez, M. Orozco, A. Morozov +2 more
2012Journal of Chemical Theory and Computation77 citations Open access
Semantic Scholar
Explaining the striking difference in twist-stretch coupling between DNA and RNA: A comparative molecular dynamics analysis
Korbinian Liebl, Tomáš Dršata, F. Lankaš, J. Lipfert +1 more
2015Nucleic Acids Research72 citations Open access
Semantic Scholar
The temperature dependence of the helical twist of DNA
F. Kriegel, C. Matek, Tomáš Dršata, K. Kulenkampff +4 more
2018Nucleic Acids Research56 citations Open access
Semantic Scholar
Mechanical properties of symmetric and asymmetric DNA A-tracts: implications for looping and nucleosome positioning
Tomáš Dršata, N. Špačková, P. Jurečka, Marie Zgarbová +2 more
2014Nucleic Acids Research56 citations Open access
Semantic Scholar
Strikingly different effects of hydrogen bonding on the photodynamics of individual nucleobases in DNA: comparison of guanine and cytosine.
T. Zelený, Matthias Ruckenbauer, A. Aquino, T. Müller +5 more
2012Journal of the American Chemical Society28 citations
Semantic Scholar
Mechanical Model of DNA Allostery.
Tomáš Dršata, Marie Zgarbová, N. Špačková, P. Jurečka +2 more
2014Journal of Physical Chemistry Letters24 citations
Semantic Scholar
Effect of 8-oxoguanine on DNA structure and deformability.
Tomáš Dršata, M. Kara, M. Zacharias, F. Lankaš
2013Journal of Physical Chemistry B22 citations
Semantic Scholar
Multiscale modelling of DNA mechanics
Tomáš Dršata, F. Lankaš
2015Journal of Physics: Condensed Matter19 citations Open access
Semantic Scholar
Theoretical models of DNA flexibility
Tomáš Dršata, F. Lankaš
201319 citations
Semantic Scholar
Compensatory Mechanisms in Temperature Dependence of DNA Double Helical Structure: Bending and Elongation.
Hana Dohnalová, Tomáš Dršata, J. Šponer, M. Zacharias +2 more
2020Journal of Chemical Theory and Computation17 citations Open access
Semantic Scholar
On the Use of Molecular Dynamics Simulations for Probing Allostery through DNA.
Tomáš Dršata, Marie Zgarbová, P. Jurečka, J. Šponer +1 more
2016Biophysical Journal17 citations Open access
Semantic Scholar
Impact of the nucleosome histone core on the structure and dynamics of DNA containing pyrimidine-pyrimidone (6-4) photoproduct
E. Matoušková, E. Bignon, Victor E. P. Claerbout, Tomáš Dršata +4 more
2020bioRxiv14 citations Open access
Semantic Scholar
Insights into the structure of intrastrand cross-link DNA lesion-containing oligonucleotides: G[8-5m]T and G[8-5]C from molecular dynamics simulations.
É. Dumont, Tomáš Dršata, C. F. Guerra, F. Lankaš
2015Biochemistry11 citations
Semantic Scholar
rRNA C-Loops: Mechanical Properties of a Recurrent Structural Motif.
Tomáš Dršata, K. Réblová, Ivana Beššeová, J. Šponer +1 more
2017Journal of Chemical Theory and Computation10 citations
Semantic Scholar
Interstrand cross-linking implies contrasting structural consequences for DNA: insights from molecular dynamics
E. Bignon, Tomáš Dršata, C. Morell, F. Lankaš +1 more
2016Nucleic Acids Research9 citations Open access
Semantic Scholar
Structure, dynamics, and interactions of a C4'-oxidized abasic site in DNA: a concomitant strand scission reverses affinities.
Chandan Patel, Tomáš Dršata, F. Lankaš, É. Dumont
2013Biochemistry8 citations
Semantic Scholar
Effect O6‐guanine alkylation on DNA flexibility studied by comparative molecular dynamics simulations
M. Kara, Tomáš Dršata, F. Lankaš, M. Zacharias
2015Biopolymers6 citations
Semantic Scholar
RNA Kink-turns are Highly Anisotropic with respect to Lateral Displacement of the Flanking Stems.
E. Matoušková, Tomáš Dršata, Lucie Pfeifferová, J. Šponer +2 more
2022Biophysical Journal3 citations Open access
Semantic Scholar
RNA kink-turns are highly anisotropic with respect to lateral displacement of the flanking stems.
Eva Matousková, Tomáš Dršata, L. Pfeiferová, J. Šponer +2 more
2025Biophysical Journal0 citations Open access
Semantic Scholar
MODELLING THE INTERSTRAND CROSS-LINKS IMPACT ON DNA STRUCTURE
E. Bignon, Tomáš Dršata, É. Dumont, C. Morell +1 more
20160 citations
Semantic Scholar
Modelling mechanical properties of RNA and DNA
Tomáš Dršata
20160 citations
Semantic Scholar
Tomáš Dršata Design , parametrization and verification of a coarse-grained model of DNA
Tomáš Dršata, F. Lankaš
20120 citations
Semantic Scholar
Design, parameterization and verification of a coarse-grained model of DNA
Tomáš Dršata
20120 citations
Semantic Scholar

J. Lipfert

×3

P. Jurečka×3

Marie Zgarbová×3

E. Bignon×3

K. Réblová×3

M. Orozco×2

N. Špačková×2

M. Kara×2