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Brejnev Muhire · SciRah

Researcher profile · Semantic Scholar

Brejnev Muhire

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Brejnev Muhire — researcher profile on SciRah

h-index: 17
Works: 32
Citations: 6,132

Most-cited papers

RDP4: Detection and analysis of recombination patterns in virus genomes
Darren P. Martin, B. Murrell, M. Golden, Arjun Khoosal +1 more
2015Virus Evolution3,125 citations Open access
Semantic Scholar
SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation
Brejnev Muhire, A. Varsani, Darren P. Martin
2014PLoS ONE1,612 citations Open access
Semantic Scholar
Methionine Metabolism Shapes T Helper Cell Responses through Regulation of Epigenetic Reprogramming.
D. Roy, Jocelyn Chen, V. Mamane, Eric H. Ma +22 more
2020Cell Metabolism305 citations Open access
Semantic Scholar
A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae)
Brejnev Muhire, Darren P. Martin, Judith K. Brown, J. Navas-Castillo +6 more
2013Archives of Virology253 citations Open access
Semantic Scholar
Detecting and Analyzing Genetic Recombination Using RDP4.
Darren P. Martin, B. Murrell, Arjun Khoosal, Brejnev Muhire
2017Methods in molecular biology123 citations
Semantic Scholar
Pervasive tertiary structure in the dengue virus RNA genome
Elizabeth A. Dethoff, M. Boerneke, Nandan S. Gokhale, Brejnev Muhire +7 more
2018Proceedings of the National Academy of Sciences of the United States of America109 citations Open access
Semantic Scholar
Appearances Can Be Deceptive: Revealing a Hidden Viral Infection with Deep Sequencing in a Plant Quarantine Context
T. Candresse, D. Filloux, Brejnev Muhire, Charlotte Julian +8 more
2014PLoS ONE99 citations Open access
Semantic Scholar
The global distribution of Banana bunchy top virus reveals little evidence for frequent recent, human-mediated long distance dispersal events
D. Stainton, Darren P. Martin, Brejnev Muhire, S. Lolohea +14 more
2015Virus Evolution72 citations Open access
Semantic Scholar
Extensive recombination detected among beak and feather disease virus isolates from breeding facilities in Poland.
Laurel Julian, T. Piasecki, K. Chrzastek, M. Walters +4 more
2013Journal of General Virology72 citations Open access
Semantic Scholar
Evidence of Pervasive Biologically Functional Secondary Structures within the Genomes of Eukaryotic Single-Stranded DNA Viruses
Brejnev Muhire, M. Golden, B. Murrell, P. Lefeuvre +11 more
2013Journal of Virology46 citations Open access
Semantic Scholar
ACLY and ACSS2 link nutrient-dependent chromatin accessibility to CD8 T cell effector responses
Irem Kaymak, M. Watson, Brandon M Oswald, Shixin Ma +24 more
2024Journal of Experimental Medicine45 citations Open access
Semantic Scholar
Pigeon circoviruses display patterns of recombination, genomic secondary structure and selection similar to those of beak and feather disease viruses.
T. Stenzel, T. Piasecki, K. Chrzastek, Laurel Julian +4 more
2014Journal of General Virology44 citations Open access
Semantic Scholar
Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa.
Pauline Bernardo, Brejnev Muhire, S. François, Maëlle Deshoux +16 more
2016Virology36 citations Open access
Semantic Scholar
Chromatin restriction by the nucleosome remodeler Mi-2β and functional interplay with lineage-specific transcription regulators control B-cell differentiation
Toshimi Yoshida, Yeguang Hu, Zhihong Zhang, A. Emmanuel +7 more
2019Genes & Development29 citations Open access
Semantic Scholar
Molecular diversity of Chickpea chlorotic dwarf virus in Sudan: high rates of intra-species recombination - a driving force in the emergence of new strains.
S. Kraberger, S. Kumari, A. Hamed, B. Gronenborn +6 more
2015Infection, Genetics and Evolution29 citations Open access
Semantic Scholar
Recombinant Goose Circoviruses Circulating in Domesticated and Wild Geese in Poland
T. Stenzel, D. Dziewulska, Brejnev Muhire, Penelope Hartnady +3 more
2018Viruses28 citations Open access
Semantic Scholar
Excess dietary carbohydrate affects mitochondrial integrity as observed in brown adipose tissue
Althea N. Waldhart, Brejnev Muhire, B. Johnson, Dean J. Pettinga +7 more
2021Cell Reports25 citations Open access
Semantic Scholar
Extensive Recombination-Induced Disruption of Genetic Interactions Is Highly Deleterious but Can Be Partially Reversed by Small Numbers of Secondary Recombination Events
A. Monjane, Darren P. Martin, F. Lakay, Brejnev Muhire +5 more
2014Journal of Virology17 citations Open access
Semantic Scholar
Patterns of Recombination in HIV-1M Are Influenced by Selection Disfavouring the Survival of Recombinants with Disrupted Genomic RNA and Protein Structures
M. Golden, Brejnev Muhire, Yves J. Semegni, Darren P. Martin
2014PLoS ONE15 citations Open access
Semantic Scholar
Non-neutral evolution of H3.3-encoding genes occurs without alterations in protein sequence
Brejnev Muhire, M. Booker, M. Tolstorukov
2018Scientific Reports14 citations Open access
Semantic Scholar
PGE2 alters chromatin through H2A.Z-variant enhancer nucleosome modification to promote hematopoietic stem cell fate
Audrey Sporrij, Avik Choudhuri, Meera Prasad, Brejnev Muhire +9 more
2023Proceedings of the National Academy of Sciences of the United States of America12 citations Open access
Semantic Scholar
Prior metabolite extraction fully preserves RNAseq quality and enables integrative multi-‘omics analysis of the liver metabolic response to viral infection
Zachary B. Madaj, Michael S. Dahabieh, Vijayvardhan Kamalumpundi, Brejnev Muhire +10 more
2023RNA Biology8 citations Open access
Semantic Scholar
Alterations in chromatin at antigen receptor loci define lineage progression during B lymphopoiesis
M. Lion, Brejnev Muhire, Yuka Namiki, M. Tolstorukov +1 more
2020Proceedings of the National Academy of Sciences of the United States of America7 citations Open access
Semantic Scholar
The influence of secondary structure, selection and recombination on rubella virus nucleotide substitution rate estimates
Leendert J. Cloete, E. Tanov, Brejnev Muhire, Darren P. Martin +1 more
2014Virology Journal5 citations Open access
Semantic Scholar
Sequence Demarcation Tool (SDT), a Free User-Friendly Computer Program Using Pairwise Genetic Identity Calculations to Classify Nucleotide or Amino Acid Sequences.
Brejnev Muhire, P. Roumagnac, A. Varsani, D. Martin
2025Methods in molecular biology4 citations
Semantic Scholar
Prostaglandin E2 Stimulates CREB-Mediated Modification of Histone Variant Nucleosomes at Enhancers to Promote Hematopoietic Stem Cell Fate
Audrey Sporrij, E. Fast, Brejnev Muhire, Margot E. Manning +4 more
2018Blood2 citations
Semantic Scholar
Stimulation-responsive enhancers regulate inflammatory gene activation through retention and modification of H2A.Z-variant accessible nucleosomes
Audrey Sporrij, Meera Prasad, Brejnev Muhire, E. Fast +9 more
2022bioRxiv1 citations Open access
Semantic Scholar
The influence of secondary structure, selection and recombination on rubella virus nucleotide substitution rate estimates
Leendert J. Cloete, E. Tanov, Brejnev Muhire, Darren P. Martin +1 more
2014Virology Journal1 citations Open access
Semantic Scholar
A genetic screen reveals dosage-sensitive effects of ASD genes and identifies domino as a regulator of synaptic and behavioral phenotypes
Ellen Stirtz, Z. Madaj, Brejnev Muhire, Robert Fillinger +5 more
2026bioRxiv0 citations Open access
Semantic Scholar
Combined single-sample metabolomics and RNAseq reveals a hepatic pyrimidine metabolic response to acute viral infection
Zachary B. Madaj, Michael S. Dahabieh, Vijayvardhan Kamalumpundi, Brejnev Muhire +10 more
2022bioRxiv0 citations Open access
Semantic Scholar
The evolutionary impacts of secondary structures within genomes of eukaryote-infecting single-stranded DNA viruses
Brejnev Muhire
20150 citations
Semantic Scholar
Genomes of Eukaryotic Single-Stranded the Functional Secondary Structures within Evidence of Pervasive Biologically
Patrick C. N. Martin, A. Varsani, N. Shepherd, A. Monjane +8 more
20140 citations
Semantic Scholar

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