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Amy Y. Shih · SciRah

Researcher profile · Semantic Scholar

Amy Y. Shih

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Amy Y. Shih — researcher profile on SciRah

h-index: 20
Works: 34
Citations: 1,766

Most-cited papers

A novel surfactant nanoemulsion with a unique non-irritant topical antimicrobial activity against bacteria, enveloped viruses and fungi.
Tarek M. Hamouda, A. Myc, Brian J. Donovan, Amy Y. Shih +2 more
2001Microbiology Research340 citations Open access
Semantic Scholar
Coarse grained protein-lipid model with application to lipoprotein particles.
Amy Y. Shih, A. Arkhipov, P. Freddolino, K. Schulten
2006Journal of Physical Chemistry B258 citations Open access
Semantic Scholar
Molecular dynamics simulations of discoidal bilayers assembled from truncated human lipoproteins.
Amy Y. Shih, I. Denisov, James C. Phillips, S. Sligar +1 more
2005Biophysical Journal127 citations Open access
Semantic Scholar
Assembly of lipoprotein particles revealed by coarse-grained molecular dynamics simulations.
Amy Y. Shih, P. Freddolino, A. Arkhipov, K. Schulten
2007Journal of Structural Biology120 citations
Semantic Scholar
3,5-Dihydroxybenzoic Acid, a Specific Agonist for Hydroxycarboxylic Acid 1, Inhibits Lipolysis in Adipocytes
Chang-Lu Liu, Chester Kuei, Jessica Zhu, Jingxue Yu +10 more
2012Journal of Pharmacology and Experimental Therapeutics106 citations
Semantic Scholar
STRUCTURAL DIFFERENCES BETWEEN SOLUBLE AND MEMBRANE BOUND CYTOCHROMES P450
I. Denisov, Amy Y. Shih, S. Sligar
2011Journal of Inorganic Biochemistry92 citations Open access
Semantic Scholar
Disassembly of nanodiscs with cholate.
Amy Y. Shih, P. Freddolino, S. Sligar, K. Schulten
2007Nano letters (Print)92 citations
Semantic Scholar
Dynamic Structural Differences between Human and Mouse STING Lead to Differing Sensitivity to DMXAA.
Amy Y. Shih, K. Damm-Ganamet, T. Mirzadegan
2018Biophysical Journal81 citations Open access
Semantic Scholar
Assembly of lipids and proteins into lipoprotein particles.
Amy Y. Shih, A. Arkhipov, P. Freddolino, S. Sligar +1 more
2007Journal of Physical Chemistry B69 citations Open access
Semantic Scholar
Analysis of the Structural and Molecular Basis of Voltage-sensitive Sodium Channel Inhibition by the Spider Toxin Huwentoxin-IV (μ-TRTX-Hh2a)
N. Minassian, A. Gibbs, Amy Y. Shih, Yi Liu +10 more
2013Journal of Biological Chemistry66 citations Open access
Semantic Scholar
Study of GPR81, the Lactate Receptor, from Distant Species Identifies Residues and Motifs Critical for GPR81 Functions
Chester Kuei, Jingxue Yu, Jessica Zhu, Jie-Jun Wu +5 more
2011Molecular Pharmacology62 citations
Semantic Scholar
Maturation of High-Density Lipoproteins
Amy Y. Shih, S. Sligar, K. Schulten
2009Journal of the Royal Society Interface53 citations Open access
Semantic Scholar
Application of Residue-Based and Shape-Based Coarse-Graining to Biomolecular Simulations
A. Arkhipov, K. Schulten, P. Freddolino, Yi Ying +2 more
200837 citations
Semantic Scholar
Microbial contaminations of laboratory mice and rats in Taiwan from 2004 to 2007.
Chung-Tiang Liang, Amy Y. Shih, Yu-Hsiu Chang, Chiung-Wen Liu +13 more
2009Journal of the American Association for Laboratory Animal Science35 citations
Semantic Scholar
Molecular models need to be tested: the case of a solar flares discoidal HDL model.
Amy Y. Shih, S. Sligar, K. Schulten
2008Biophysical Journal32 citations Open access
Semantic Scholar
Lipid-Protein Correlations in Nanoscale Phospholipid Bilayers by Solid-State NMR
Aleksandra Z. Kijac, Amy Y. Shih, Andrew J. Nieuwkoop, K. Schulten +2 more
2010Biochemistry27 citations Open access
Semantic Scholar
Computer modeling in biotechnology: a partner in development.
A. Aksimentiev, Robert K. Brunner, J. Cohen, J. Comer +7 more
2008Methods in molecular biology25 citations
Semantic Scholar
Identification of Structural Motifs Critical for Epstein-Barr Virus-Induced Molecule 2 Function and Homology Modeling of the Ligand Docking Site
Li Zhang, Amy Y. Shih, Xia V. Yang, Chester Kuei +7 more
2012Molecular Pharmacology22 citations
Semantic Scholar
Comprehensive engineering of the tarantula venom peptide huwentoxin-IV to inhibit the human voltage-gated sodium channel hNav1.7
R. Neff, M. Flinspach, A. Gibbs, Amy Y. Shih +8 more
2019Journal of Biological Chemistry20 citations Open access
Semantic Scholar
Predicting the Binding of Fatty Acid Amide Hydrolase Inhibitors by Free Energy Perturbation.
A. Saha, Amy Y. Shih, T. Mirzadegan, M. Seierstad
2018Journal of Chemical Theory and Computation20 citations
Semantic Scholar
Impact of Protein Preparation on Resulting Accuracy of FEP Calculations
Amy Y. Shih, M. Hack, T. Mirzadegan
2020Journal of Chemical Information and Modeling15 citations
Semantic Scholar
The role of molecular modeling in bionanotechnology
D. Lu, A. Aksimentiev, Amy Y. Shih, Eduardo R. Cruz-Chú +3 more
2006Physical Biology14 citations Open access
Semantic Scholar
Identification of small-molecule protein–protein interaction inhibitors for NKG2D
A. Thompson, M. Harbut, Pei-Pei Kung, N. Karpowich +36 more
2023Proceedings of the National Academy of Sciences of the United States of America13 citations Open access
Semantic Scholar
Chapter 11 Molecular Modeling of the Structural Properties and Formation of High-Density Lipoprotein Particles
Amy Y. Shih, P. Freddolino, A. Arkhipov, S. Sligar +1 more
200810 citations
Semantic Scholar
pH Dependence of a GPR4 Selective Antagonist Hampers Its Therapeutic Potential
J. Stalewski, Amy Y. Shih, R. Papazyan, J. Ramirez +9 more
2023Journal of Pharmacology and Experimental Therapeutics8 citations Open access
Semantic Scholar
Study of GPR 81 , the Lactate Receptor , from Distant Species Identifies Residues and Motifs Critical for GPR 81 Functions
Chester Kuei, Jingxue Yu, Jessica Zhu, Jie-Jun Wu +5 more
20118 citations
Semantic Scholar
Breaking the Glass Ceiling in Simulation and Modeling: Women in Pharmaceutical Discovery.
K. Damm-Ganamet, R. DesJarlais, T. Marrone, Amy Y. Shih +3 more
2020Journal of Medicinal Chemistry4 citations
Semantic Scholar
3,5-Dihydroxybenzoic Acid, a Specific Agonist for HCA1, Inhibits Lipolysis in Adipocytes
Chang-Lu Liu, Chester Kuei, Jessica Zhu, Jingxue Yu +11 more
20124 citations
Semantic Scholar
Mutagenesis of GPR139 reveals ways to create gain or loss of function receptors
Lien Wang, Grace Lee, Amy Y. Shih, Chester Kuei +7 more
2019Pharmacology Research & Perspectives3 citations Open access
Semantic Scholar
Functional Studies of Interaction Between Huwentoxin-IV and Voltage-Gated Sodium Channel Nav1.7
Amy Y. Shih, S. Bembenek, N. Minassian, R. Neff +7 more
20122 citations Open access
Semantic Scholar
Lipid-Protein Correlations in Nanoscale Phospholipid Bilayers by Solid-State NMR
Aleksandra Z. Kijac, Amy Y. Shih, Andrew J. Nieuwkoop, K. Schulten +3 more
20111 citations
Semantic Scholar
Structure, Assembly, and Maturation of High-Density Lipoproteins
Amy Y. Shih
20080 citations
Semantic Scholar
Case Study : Membranes
P. Freddolino, Amy Y. Shih
20060 citations
Semantic Scholar
Antimicrobial compositions and methods of use thereof
Amy Y. Shih, M. Andrzej, J. R. Baker, Tarek M. Hamouda
20000 citations
Semantic Scholar

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K. Schulten×13
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K. Schulten — researcher profile on SciRah
T. Mirzadegan×10
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P. Freddolino×8
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S. Sligar×8
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×6

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A. Arkhipov — researcher profile on SciRah

Chang-Lu Liu×6

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Chang-Lu Liu — researcher profile on SciRah

Chester Kuei×6

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Chester Kuei — researcher profile on SciRah

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Jie-Jun Wu — researcher profile on SciRah

T. Lovenberg×6

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Li Zhang — researcher profile on SciRah

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Jessica Zhu — researcher profile on SciRah

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Jingxue Yu — researcher profile on SciRah