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Zohar Shipony · SciRah

Researcher profile · Semantic Scholar

Zohar Shipony

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Zohar Shipony — researcher profile on SciRah

h-index: 16
Works: 32
Citations: 4,389

Most-cited papers

Chromatin accessibility and the regulatory epigenome
Sandy L. Klemm, Zohar Shipony, W. Greenleaf
2019Nature reviews genetics1,521 citations
Semantic Scholar
Derivation of novel human ground state naive pluripotent stem cells
O. Gafni, L. Weinberger, A. Mansour, Y. Manor +23 more
2013Nature1,050 citations
Semantic Scholar
Deterministic direct reprogramming of somatic cells to pluripotency
Y. Rais, Asaf Zviran, S. Geula, O. Gafni +22 more
2013Nature567 citations
Semantic Scholar
DC mobilization from the skin requires docking to immobilized CCL21 on lymphatic endothelium and intralymphatic crawling
O. Tal, H. Lim, Irina Gurevich, Idan Milo +4 more
2011Journal of Experimental Medicine286 citations Open access
Semantic Scholar
Dynamic and static maintenance of epigenetic memory in pluripotent and somatic cells
Zohar Shipony, Zohar Mukamel, Netta Mendelson Cohen, G. Landan +6 more
2014Nature173 citations
Semantic Scholar
Aging disrupts homeostatic circadian gene regulation and function in macrophages
Eran Blacher, Connie Tsai, L. Litichevskiy, Zohar Shipony +7 more
2021Nature Immunology147 citations Open access
Semantic Scholar
p53 is a central regulator driving neurodegeneration caused by C9orf72 poly(PR)
Maya Maor-Nof, Zohar Shipony, Rodrigo Lopez-Gonzalez, Lisa Nakayama +23 more
2021Cell143 citations Open access
Semantic Scholar
Long-range single-molecule mapping of chromatin accessibility in eukaryotes
Zohar Shipony, G. Marinov, Matthew P. Swaffer, Nicholas A. Sinnott-Armstrong +3 more
2018Nature Methods136 citations Open access
Semantic Scholar
Loss of the neural-specific BAF subunit ACTL6B relieves repression of early response genes and causes recessive autism
Wendy Wenderski, Lu Wang, A. Krokhotin, J. Walsh +25 more
2020Proceedings of the National Academy of Sciences of the United States of America58 citations Open access
Semantic Scholar
p53 is essential for DNA methylation homeostasis in naïve embryonic stem cells, and its loss promotes clonal heterogeneity
A. Tovy, A. Spiro, R. McCarthy, Zohar Shipony +7 more
2017Genes & Development57 citations Open access
Semantic Scholar
Integrated single-cell transcriptomics and epigenomics reveals strong germinal center-associated etiology of autoimmune risk loci
Hamish W. King, Kristen L. Wells, Zohar Shipony, Arwa S. Kathiria +8 more
2021bioRxiv53 citations Open access
Semantic Scholar
Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters.
Danny Zeevi, Eilon Sharon, M. Lotan-Pompan, Yaniv Lubling +6 more
2011Genome Research52 citations Open access
Semantic Scholar
Increased ACTL6A Occupancy Within mSWI/SNF Chromatin Remodelers Drives Human Squamous Cell Carcinoma
Chiung-Ying Chang, Zohar Shipony, Sherry G. Lin, A. Kuo +4 more
2021bioRxiv38 citations Open access
Semantic Scholar
Reduced CTL motility and activity in avascular tumor areas
Yoav Manaster, Zohar Shipony, Anat Hutzler, Masha Kolesnikov +6 more
2019Cancer Immunology and Immunotherapy27 citations Open access
Semantic Scholar
Interrogating the Accessible Chromatin Landscape of Eukaryote Genomes Using ATAC-seq.
G. Marinov, Zohar Shipony
2021Methods in molecular biology25 citations
Semantic Scholar
Global loss of promoter–enhancer connectivity and rebalancing of gene expression during early colorectal cancer carcinogenesis
Yizhou Zhu, Ha-Yan Lee, Shannon M. White, Annika K. Weimer +22 more
2024bioRxiv22 citations Open access
Semantic Scholar
Genome-Wide Mapping of Active Regulatory Elements Using ATAC-seq.
G. Marinov, Zohar Shipony, A. Kundaje, W. Greenleaf
2023Methods in molecular biology9 citations
Semantic Scholar
Corrigendum: Derivation of novel human ground state naive pluripotent stem cells
O. Gafni, L. Weinberger, A. Mansour, Y. Manor +23 more
2015Nature7 citations Open access
Semantic Scholar
An optimized ATAC-seq protocol for genome-wide mapping of active regulatory elements in primary mouse cortical neurons
Maya Maor-Nof, Zohar Shipony, G. Marinov, W. Greenleaf +1 more
2021STAR Protocols6 citations Open access
Semantic Scholar
Ultra high-throughput whole-genome methylation sequencing reveals trajectories in precancerous polyps to early colorectal adenocarcinoma
Ha-Yan Lee, Gat Krieger, Tyson Clark, Aziz Khan +19 more
2022bioRxiv4 citations Open access
Semantic Scholar
Corrigendum: Deterministic direct reprogramming of somatic cells to pluripotency
Y. Rais, Asaf Zviran, S. Geula, O. Gafni +22 more
2015Nature4 citations Open access
Semantic Scholar
Simultaneous Single-Cell Profiling of the Transcriptome and Accessible Chromatin Using SHARE-seq.
Samuel H. Kim, G. Marinov, S. Bagdatli, Soon Il Higashino +3 more
2023Methods in molecular biology3 citations
Semantic Scholar
Single-molecule multikilobase-scale profiling of chromatin accessibility using m6A-SMAC-seq and m6A-CpG-GpC-SMAC-seq
G. Marinov, Zohar Shipony, A. Kundaje, W. Greenleaf
2022Methods in molecular biology3 citations Open access
Semantic Scholar
The Utility of Ultra-Deep RNA sequencing in Mendelian Disorder Diagnostics
Sen Zhao, Jefferson C. Sinson, Sheng-Lan Li, Jill A. Rosenfeld +16 more
2025medRxiv2 citations Open access
Semantic Scholar
The Utility of Ultra-Deep RNA Sequencing in Mendelian Disorder Diagnostics
Sen Zhao, Jefferson C. Sinson, Sheng-Lan Li, Jill A. Rosenfeld +16 more
2025American Journal of Human Genetics2 citations Open access
Semantic Scholar
Corrigendum: p53 is essential for DNA methylation homeostasis in naïve embryonic stem cells, and its loss promotes clonal heterogeneity.
A. Tovy, A. Spiro, R. McCarthy, Zohar Shipony +7 more
2018Genes & Development2 citations Open access
Semantic Scholar
An automated ATAC-seq method reveals sequence determinants of transcription factor dose response in the open chromatin
Betty B. Liu, Masaru Shimasawa, Sidney Vermeulen, Samuel H. Kim +4 more
2025bioRxiv1 citations Open access
Semantic Scholar
Author Correction: Global loss of promoter–enhancer connectivity and rebalancing of gene expression during early colorectal cancer carcinogenesis
Yizhou Zhu, Ha-Yan Lee, Shannon M. White, Annika K. Weimer +22 more
2025Nature Cancer0 citations Open access
Semantic Scholar
Abstract 337: Balanced-strand sequencing for highly efficient duplex variant calling in circulating tumor DNA
Adam J. Widman, A. P. Cheng, Aaron Sossin, Srinivas Rajagopalan +21 more
2024Cancer Research0 citations
Semantic Scholar
Abstract 4742: Familial adenomatous polyposis epigenetic landscape as a precancer model of colorectal cancer
Ha-Yan Lee, Gat Krieger, Tyson Clark, Yizhou Zhu +17 more
2023Cancer Research0 citations
Semantic Scholar
Abstract B102: Releasing oxygen-restricted CTL function: Insights from live intratumoral imaging
T. Feferman, Yoav Manaster, Yael Gruper, Zohar Shipony +1 more
20160 citations
Semantic Scholar
ribosomal proteins is encoded within their promoters Compensation for differences in gene copy number among yeast Material
Danny Zeevi, Eilon Sharon, M. Lotan-Pompan, Yaniv Lubling +6 more
20110 citations
Semantic Scholar

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