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D. Bouyssié · SciRah

Researcher profile · Semantic Scholar

D. Bouyssié

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D. Bouyssié — researcher profile on SciRah

h-index: 21
Works: 42
Citations: 1,879

Most-cited papers

Extensive Analysis of the Cytoplasmic Proteome of Human Erythrocytes Using the Peptide Ligand Library Technology and Advanced Mass Spectrometry*S
Florence Roux-Dalvai, Anne Gonzalez de Peredo, C. Simó, L. Guerrier +7 more
2008Molecular & Cellular Proteomics229 citations Open access
Semantic Scholar
Proline: an efficient and user-friendly software suite for large-scale proteomics
D. Bouyssié, Anne-Marie Hesse, E. Mouton-Barbosa, M. Rompais +14 more
2020Bioinform.228 citations Open access
Semantic Scholar
Comprehensive human urine standards for comparability and standardization in clinical proteome analysis
H. Mischak, W. Kolch, M. Aivaliotis, D. Bouyssié +27 more
2010PROTEOMICS - Clinical Applications162 citations Open access
Semantic Scholar
Proteomic Analysis of Chloroplast-to-Chromoplast Transition in Tomato Reveals Metabolic Shifts Coupled with Disrupted Thylakoid Biogenesis Machinery and Elevated Energy-Production Components1[W]
Cristina Bârsan, M. Zouine, E. Maza, Wan-Ping Bian +8 more
2012Plant Physiology133 citations Open access
Semantic Scholar
In-depth Exploration of Cerebrospinal Fluid by Combining Peptide Ligand Library Treatment and Label-free Protein Quantification*
E. Mouton-Barbosa, Florence Roux-Dalvai, D. Bouyssié, F. Berger +7 more
2010Molecular & Cellular Proteomics118 citations Open access
Semantic Scholar
A proteomics sample metadata representation for multiomics integration and big data analysis
Chengxin Dai, Anja Füllgrabe, J. Pfeuffer, E. Solovyeva +36 more
2021Nature Communications105 citations Open access
Semantic Scholar
Mascot File Parsing and Quantification (MFPaQ), a New Software to Parse, Validate, and Quantify Proteomics Data Generated by ICAT and SILAC Mass Spectrometric Analyses
D. Bouyssié, A. G. de Peredo, Emmanuelle Mouton, R. Albigot +6 more
2007Molecular & Cellular Proteomics90 citations Open access
Semantic Scholar
Quantitative Proteomics Reveals a Dynamic Association of Proteins to Detergent-resistant Membranes upon Elicitor Signaling in Tobacco*
Thomas Stanislas, D. Bouyssié, M. Rossignol, Simona Vesa +5 more
2009Molecular & Cellular Proteomics88 citations Open access
Semantic Scholar
Benchmarking quantitative label-free LC-MS data processing workflows using a complex spiked proteomic standard dataset.
C. Ramus, Agnès Hovasse, M. Marcellin, Anne-Marie Hesse +14 more
2016Journal of Proteomics83 citations
Semantic Scholar
Bacterial protein-O-mannosylating enzyme is crucial for virulence of Mycobacterium tuberculosis
Chia-Fang Liu, Laure Tonini, W. Malaga, M. Beau +8 more
2013Proceedings of the National Academy of Sciences of the United States of America82 citations Open access
Semantic Scholar
Lamellar Bodies of Human Epidermis
A. Raymond, A. G. de Peredo, Alexandre Stella, A. Ishida-Yamamoto +4 more
2008Molecular & Cellular Proteomics62 citations Open access
Semantic Scholar
Label-free Quantification and Shotgun Analysis of Complex Proteomes by One-dimensional SDS-PAGE/NanoLC-MS
Violette Gautier, E. Mouton-Barbosa, D. Bouyssié, Nicolas Delcourt +6 more
2012Molecular & Cellular Proteomics61 citations Open access
Semantic Scholar
Comparison of label-free quantification methods for the determination of protein complexes subunits stoichiometry
Bertrand Fabre, Thomas Lambour, D. Bouyssié, Thomas Menneteau +3 more
201457 citations Open access
Semantic Scholar
A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics
B. Van Puyvelde, S. Daled, S. Willems, R. Gabriels +14 more
2021Scientific Data50 citations Open access
Semantic Scholar
CHRONIC ETHANOL FEEDING AFFECTS PROTEASOME INTERACTING PROTEINS
Marie-Pierre Bousquet-Dubouch, С. М. Нгуен, D. Bouyssié, O. Burlet-Schiltz +3 more
2009Proteomics42 citations Open access
Semantic Scholar
Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods
C. Ramus, Agnès Hovasse, M. Marcellin, Anne-Marie Hesse +14 more
2015Data in Brief38 citations Open access
Semantic Scholar
Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14.
C. Carapito, L. Lane, Mohamed Benama, Alisson Opsomer +13 more
2015Journal of Proteome Research37 citations Open access
Semantic Scholar
Comparing 22 popular phosphoproteomics pipelines for peptide identification and site localization.
M. Locard-Paulet, D. Bouyssié, C. Froment, O. Burlet-Schiltz +1 more
2020Journal of Proteome Research36 citations Open access
Semantic Scholar
HDX-Viewer: interactive 3D visualization of hydrogen–deuterium exchange data
D. Bouyssié, J. Lesne, M. Locard-Paulet, R. Albigot +2 more
2019Bioinform.27 citations Open access
Semantic Scholar
Isoginkgetin derivative IP2 enhances the adaptive immune response against tumor antigens
Romain Darrigrand, Alison Pierson, Marine Rouillon, D. Renko +8 more
2021Communications Biology25 citations Open access
Semantic Scholar
mzDB: A File Format Using Multiple Indexing Strategies for the Efficient Analysis of Large LC-MS/MS and SWATH-MS Data Sets*
D. Bouyssié, M. Dubois, S. Nasso, Anne Gonzalez de Peredo +3 more
2014Molecular & Cellular Proteomics23 citations Open access
Semantic Scholar
Label-free Quantitative Urinary Proteomics Identifies the Arginase Pathway as a New Player in Congenital Obstructive Nephropathy*
Chrystelle Lacroix, C. Caubet, Anne Gonzalez de Peredo, B. Breuil +14 more
2014Molecular & Cellular Proteomics21 citations Open access
Semantic Scholar
Good Vibrations: Structural Remodeling of Maturing Yeast Pre-40S Ribosomal Particles Followed by Cryo-Electron Microscopy
R. Shayan, D. Rinaldi, Natacha Larburu, L. Plassart +6 more
2020Molecules15 citations Open access
Semantic Scholar
A community proposal to integrate proteomics activities in ELIXIR
J. Vizcaíno, Mathias Walzer, R. Jiménez, Wout Bittremieux +22 more
2017F1000Research13 citations Open access
Semantic Scholar
Proceedings of the EuBIC Winter School 2017.
S. Willems, D. Bouyssié, M. David, M. Locard-Paulet +5 more
2017Journal of Proteomics10 citations Open access
Semantic Scholar
Quantitative proteomic analysis to decipher the differential apoptotic response of bortezomib‐treated APL cells before and after retinoic acid differentiation reveals involvement of protein toxicity mechanisms
S. Uttenweiler-Joseph, D. Bouyssié, David Calligaris, Pierre G. Lutz +2 more
2013Proteomics9 citations
Semantic Scholar
Potential Plasticity of the Mannoprotein Repertoire Associated to Mycobacterium tuberculosis Virulence Unveiled by Mass Spectrometry-Based Glycoproteomics
Laure Tonini, Bashir Sadet, Alexandre Stella, D. Bouyssié +3 more
2020Molecules7 citations Open access
Semantic Scholar
EuPA Open Proteomics
Dominik Kopczynski, Wout Bittremieux, D. Bouyssié, Viktoria Dorfer +7 more
20197 citations
Semantic Scholar
Proceedings of the EuBIC developer's meeting 2018.
S. Willems, D. Bouyssié, D. Deforce, Viktoria Dorfer +9 more
2018Journal of Proteomics7 citations Open access
Semantic Scholar
Retention Time and Fragmentation Predictors Increase Confidence in Identification of Common Variant Peptides
Dafni Skiadopoulou, J. Vašíček, K. Kuznetsova, D. Bouyssié +2 more
2023Journal of Proteome Research6 citations Open access
Semantic Scholar
The European Bioinformatics Community for Mass Spectrometry (EuBIC-MS): an open community for bioinformatics training and research.
Wout Bittremieux, D. Bouyssié, Viktoria Dorfer, M. Locard-Paulet +4 more
2021Rapid Communications in Mass Spectrometry5 citations Open access
Semantic Scholar
WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows
D. Bouyssié, Pinar Altiner, S. Capella-Gutiérrez, J. M. Fernández +15 more
2023bioRxiv4 citations Open access
Semantic Scholar
Proceedings of the EuBIC Winter School 2019
Dominik Kopczynski, Wout Bittremieux, D. Bouyssié, Viktoria Dorfer +6 more
2019EuPA Open Proteomics3 citations Open access
Semantic Scholar
OmicsQ: a user-friendly platform for interactive quantitative omics data analysis
Xuan-Tung Trinh, André Abrantes da Costa, D. Bouyssié, A. Rogowska-Wrzesińska +1 more
2025Bioinform.1 citations Open access
Semantic Scholar
Mass Spectrometry-Based Workflow for the Identification and Quantification of Alternative and Canonical Proteins in Pancreatic Cancer Cells
Clémence Guillon, Carole Pichereaux, I. Lazar, Karima Chaoui +10 more
2024Cells1 citations Open access
Semantic Scholar
Validation of MS/MS Identifications and Label-Free Quantification Using Proline.
Véronique Dupierris, Anne-Marie Hesse, Jean-Philippe Menetrey, D. Bouyssié +3 more
2023Methods in molecular biology0 citations Open access
Semantic Scholar
Author response for "The European Bioinformatics Community for Mass Spectrometry (EuBIC‐MS): an open community for bioinformatics training and research"
Wout Bittremieux, D. Bouyssié, Viktoria Dorfer, M. Locard-Paulet +4 more
20210 citations Open access
Semantic Scholar
A community proposal to integrate proteomics activities in ELIXIR [version 1; referees: 2 approved]
J. Vizcaíno, Mathias Walzer, Rafael C. Jiménez, Wout Bittremieux +19 more
20170 citations
Semantic Scholar
efficient analysis of large LC-MS/MS and SWATH-MS datasets
D. Bouyssié, A. G. de Peredo, O. Burlet, R. Aebersold +1 more
20140 citations
Semantic Scholar
Développement de nouveaux outils bioinformatiques pour l'exploitation des données de spectrométrie de masse en protéomique haut-débit
D. Bouyssié
20120 citations
Semantic Scholar
Session 2
E. Mouton-Barbosa, A. G. de Peredo, D. Bouyssié, L. Guerrier +2 more
2009Molecular & Cellular Proteomics0 citations Open access
Semantic Scholar
A NU S CR I P T
A. G. de Peredo, NU Alain Van Dorssaeler, C. Ramus, Agnès Hovasse +14 more
0 citations
Semantic Scholar

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