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Y. Tsumura · SciRah

Researcher profile · Semantic Scholar

Y. Tsumura

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Y. Tsumura — researcher profile on SciRah

h-index: 46
Works: 277
Citations: 6,524

Most-cited papers

High-throughput linkage mapping of Australian white cypress pine (Callitris glaucophylla) and map transferability to related species
S. Sakaguchi, Takeshi Sugino, Y. Tsumura, M. Ito +9 more
2015Tree Genetics & Genomes124 citations Open access
Semantic Scholar
Neutral and adaptive genetic diversity in plants: An overview
M. Y. Chung, J. Merilä, Jialiang Li, Kangshan Mao +3 more
2023Frontiers in Ecology and Evolution104 citations Open access
Semantic Scholar
The population demography of Betula maximowicziana, a cool‐temperate tree species in Japan, in relation to the last glacial period: its admixture‐like genetic structure is the result of simple population splitting not admixing
Y. Tsuda, K. Nakao, Y. Ide, Y. Tsumura
2015Molecular Ecology75 citations
Semantic Scholar
Genome scanning for detecting adaptive genes along environmental gradients in the Japanese conifer, Cryptomeria japonica
Y. Tsumura, K. Uchiyama, Y. Moriguchi, S. Ueno +1 more
2012Heredity74 citations Open access
Semantic Scholar
Evidence for cryptic northern refugia in the last glacial period in Cryptomeria japonica.
M. Kimura, K. Uchiyama, K. Nakao, Y. Moriguchi +2 more
2014Annals of Botany65 citations
Semantic Scholar
The construction of a high-density linkage map for identifying SNP markers that are tightly linked to a nuclear-recessive major gene for male sterility in Cryptomeria japonica D. Don
Y. Moriguchi, T. Ujino-Ihara, K. Uchiyama, Norihiro Futamura +7 more
2012BMC Genomics62 citations Open access
Semantic Scholar
Genetic Differentiation and Evolutionary Adaptation in Cryptomeria japonica
Y. Tsumura, K. Uchiyama, Y. Moriguchi, M. Kimura +2 more
2014G3: Genes, Genomes, Genetics52 citations Open access
Semantic Scholar
Demonstration of Genome-Wide Association Studies for Identifying Markers for Wood Property and Male Strobili Traits in Cryptomeria japonica
K. Uchiyama, H. Iwata, Y. Moriguchi, T. Ujino-Ihara +9 more
2013PLoS ONE49 citations Open access
Semantic Scholar
Genetic Differentiation and Genetic Diversity of Castanopsis (Fagaceae), the Dominant Tree Species in Japanese Broadleaved Evergreen Forests, Revealed by Analysis of EST-Associated Microsatellites
K. Aoki, S. Ueno, T. Kamijo, H. Setoguchi +3 more
2014PLoS ONE46 citations Open access
Semantic Scholar
A high-density linkage map with 2560 markers and its application for the localization of the male-sterile genes ms3 and ms4 in Cryptomeria japonica D. Don
Y. Moriguchi, K. Uchiyama, S. Ueno, T. Ujino-Ihara +6 more
2016Tree Genetics & Genomes42 citations
Semantic Scholar
Climate, not Aboriginal landscape burning, controlled the historical demography and distribution of fire-sensitive conifer populations across Australia
S. Sakaguchi, D. Bowman, L. Prior, M. Crisp +3 more
2013Proceedings of the Royal Society of London. Biological Sciences42 citations Open access
Semantic Scholar
Nuclear and chloroplast DNA phylogeography reveals Pleistocene divergence and subsequent secondary contact of two genetic lineages of the tropical rainforest tree species Shorea leprosula (Dipterocarpaceae) in South‐East Asia
M. Ohtani, T. Kondo, N. Tani, S. Ueno +12 more
2013Molecular Ecology41 citations
Semantic Scholar
Population Genetic Diversity and Structure of Ancient Tree Populations of Cryptomeria japonica var. sinensis Based on RAD-seq Data
M. Cai, Ya-Feng Wen, K. Uchiyama, Yunosuke Onuma +1 more
2020Forests39 citations Open access
Semantic Scholar
Recent distribution changes affect geographic clines in genetic diversity and structure of Pinus densiflora natural populations in Japan
Masakazu G. Iwaizumi, Y. Tsuda, M. Ohtani, Y. Tsumura +1 more
201336 citations
Semantic Scholar
Identification and genetic diversity analysis of a male-sterile gene (MS1) in Japanese cedar (Cryptomeria japonica D. Don)
Yoichi Hasegawa, S. Ueno, F. Wei, A. Matsumoto +10 more
2020Scientific Reports31 citations Open access
Semantic Scholar
Establishment of a microsatellite panel covering the sugi (Cryptomeria japonica) genome, and its application for localization of a male-sterile gene (ms-2)
Y. Moriguchi, S. Ueno, Yuumi Higuchi, Daisuke Miyajima +4 more
2014Molecular breeding28 citations
Semantic Scholar
Effects of genetic and environmental factors on clonal reproduction in old-growth natural populations of Cryptomeria japonica
M. Kimura, Daisuke Kabeya, T. Saito, Y. Moriguchi +4 more
201328 citations
Semantic Scholar
Single nucleotide polymorphisms in Cryptomeria japonica: their discovery and validation for genome mapping and diversity studies
K. Uchiyama, T. Ujino-Ihara, S. Ueno, Y. Taguchi +3 more
2012Tree Genetics & Genomes28 citations
Semantic Scholar
Evidence of Intense Chromosomal Shuffling during Conifer Evolution
M. de Miguel, J. Bartholomé, F. Ehrenmann, F. Murat +11 more
2015Genome Biology and Evolution27 citations Open access
Semantic Scholar
Provenance tests for survival and growth of 50-year-old Japanese larch (Larix kaempferi) trees related to climatic conditions in central Japan
T. Nagamitsu, K. Nagasaka, H. Yoshimaru, Y. Tsumura
2014Tree Genetics & Genomes26 citations
Semantic Scholar
Genetic diversity and the origin of commercial plantation of Indonesian teak on Java Island
E. Prasetyo, Widiyatno, S. Indrioko, M. Na'iem +4 more
2020Tree Genetics & Genomes23 citations
Semantic Scholar
Scanning RNA-Seq and RAD-Seq approach to develop SNP markers closely linked to MALE STERILITY 1 (MS1) in Cryptomeria japonica D. Don
S. Ueno, K. Uchiyama, Y. Moriguchi, T. Ujino-Ihara +8 more
2019Breeding Science23 citations Open access
Semantic Scholar
Null alleles in microsatellite markers
Ya-Feng Wen, K. Uchiyama, Wen-Jun Han, U. Saneyoshi +3 more
201323 citations
Semantic Scholar
Genetic structure and local adaptation in natural forests of Cryptomeria japonica
Y. Tsumura
2022Ecological research22 citations
Semantic Scholar
Diversification of terpenoid emissions proposes a geographic structure based on climate and pathogen composition in Japanese cedar
T. Hiura, Hayate Yoshioka, S. Matsunaga, T. Saito +5 more
2021Scientific Reports21 citations Open access
Semantic Scholar
Effects of Pleistocene climate change on genetic structure and diversity of Shorea macrophylla in Kalimantan Rainforest
Singgih Utomo, K. Uchiyama, S. Ueno, A. Matsumoto +4 more
2018Tree Genetics & Genomes21 citations
Semantic Scholar
Application of a simplified method of chloroplast enrichment to small amounts of tissue for chloroplast genome sequencing1
S. Sakaguchi, S. Ueno, Y. Tsumura, H. Setoguchi +11 more
2017Applications in Plant Sciences21 citations Open access
Semantic Scholar
Genetic guidelines for tree species and perspectives on the conservation and sustainable use of forests
Y. Tsumura
2022Journal of Forest Research20 citations
Semantic Scholar
Large contribution of clonal reproduction to the distribution of deciduous liana species (Wisteria floribunda) in an old-growth cool temperate forest: evidence from genetic analysis
Hideki Mori, S. Ueno, A. Matsumoto, T. Kamijo +2 more
2018Annals of Botany20 citations Open access
Semantic Scholar
Population genetic structure and the effect of historical human activity on the genetic variability of Cryptomeria japonica core collection, in Japan
K. Uchiyama, N. Miyamoto, Makoto Takahashi, A. Watanabe +1 more
2014Tree Genetics & Genomes20 citations
Semantic Scholar
Male fecundity and pollen dispersal in hill dipterocarps: significance of mass synchronized flowering and implications for conservation
N. Tani, Y. Tsumura, K. Fukasawa, Tomoyuki Kado +9 more
201220 citations
Semantic Scholar
Geographic patterns of genetic variation in nuclear and chloroplast genomes of two related oaks (Quercus aliena and Q. serrata) in Japan: implications for seed and seedling transfer
Lerma San Jose-Maldia, A. Matsumoto, S. Ueno, A. Kanazashi +4 more
2017Tree Genetics & Genomes19 citations
Semantic Scholar
Effects of the last glacial period on genetic diversity and genetic differentiation in Cryptomeria japonica in East Asia
Y. Tsumura, M. Kimura, K. Nakao, K. Uchiyama +4 more
2020Tree Genetics & Genomes18 citations
Semantic Scholar
Effects of different silvicultural systems on the genetic diversity of Shorea parvifolia populations in the tropical rainforest of Southeast Asia
Widiyatno, S. Indrioko, M. Na'iem, K. Uchiyama +4 more
2016Tree Genetics & Genomes18 citations
Semantic Scholar
A chromosome-level genome assembly of a model conifer plant, the Japanese cedar, Cryptomeria japonica D. Don
T. Fujino, K. Yamaguchi, Toshiyuki T. Yokoyama, Toshiya Hamanaka +13 more
2023bioRxiv16 citations Open access
Semantic Scholar
Development of 32 EST-SSR markers for Abies firma (Pinaceae) and their transferability to related species
K. Uchiyama, Sayaka Fujii, W. Ishizuka, S. Goto +1 more
2013Applications in Plant Sciences16 citations Open access
Semantic Scholar
TodoFirGene: Developing Transcriptome Resources for Genetic Analysis of Abies sachalinensis
S. Ueno, Yukino Nakamura, Masaaki Kobayashi, S. Terashima +5 more
2018Plant and Cell Physiology15 citations Open access
Semantic Scholar
Complex pollination of a tropical Asian rainforest canopy tree by flower-feeding thrips and thrips-feeding predators.
T. Kondo, S. Nishimura, N. Tani, K. Ng +5 more
2016American-Eurasian journal of botany15 citations Open access
Semantic Scholar
Development of EST-SSR markers for Taxus cuspidata from publicly available transcriptome sequences
S. Ueno, Ya-Feng Wen, Y. Tsumura
201515 citations
Semantic Scholar
Potential of Genome-Wide Association Studies and Genomic Selection to Improve Productivity and Quality of Commercial Timber Species in Tropical Rainforest, a Case Study of Shorea platyclados
Sawitri, N. Tani, M. Na'iem, Widiyatno +6 more
2020Forests14 citations Open access
Semantic Scholar
Mapping quantitative trait loci for growth and wood property traits in Cryptomeria japonica across multiple environments
Hideki Mori, S. Ueno, T. Ujino-Ihara, T. Fujiwara +11 more
2019Tree Genetics & Genomes14 citations
Semantic Scholar
Conflict in outcomes for conservation based on population genetic diversity and genetic divergence approaches: a case study in the Japanese relictual conifer Sciadopitys verticillata (Sciadopityaceae)
J. Worth, Masashi Yokogawa, A. Pérez-Figueroa, Y. Tsumura +3 more
2014Conservation Genetics14 citations Open access
Semantic Scholar
Mixed Mating System Are Regulated by Fecundity in Shorea curtisii (Dipterocarpaceae) as Revealed by Comparison under Different Pollen Limited Conditions
N. Tani, Y. Tsumura, K. Fukasawa, Tomoyuki Kado +10 more
2015PLoS ONE13 citations Open access
Semantic Scholar
Inferring the demographic history of Japanese cedar, Cryptomeria japonica, using amplicon sequencing
N. Moriguchi, K. Uchiyama, R. Miyagi, Etsuko Moritsuka +6 more
2019Heredity12 citations Open access
Semantic Scholar
A simple allele-specific PCR marker for identifying male-sterile trees: Towards DNA marker-assisted selection in the Cryptomeria japonica breeding program
Y. Moriguchi, S. Ueno, M. Saito, Yuumi Higuchi +3 more
2014Tree Genetics & Genomes12 citations
Semantic Scholar
Genetic evidence for paternal inheritance of the chloroplast in four Australian Callitris species (Cupressaceae)
S. Sakaguchi, Y. Tsumura, M. Crisp, D. Bowman +1 more
2014Journal of Forest Research12 citations Open access
Semantic Scholar
Assessment of the genetic diversity and population structure of Maire yew (Taxus chinensis var. mairei) for conservation purposes
Ya-Feng Wen, K. Uchiyama, S. Ueno, Wen-Jun Han +2 more
201811 citations
Semantic Scholar
Non-Density Dependent Pollen Dispersal of Shorea maxwelliana (Dipterocarpaceae) Revealed by a Bayesian Mating Model Based on Paternity Analysis in Two Synchronized Flowering Seasons
Shinsuke Masuda, N. Tani, S. Ueno, S. Lee +4 more
2013PLoS ONE11 citations Open access
Semantic Scholar
Construction of a reference transcriptome for the analysis of male sterility in sugi (Cryptomeria japonica D. Don) focusing on MALE STERILITY 1 (MS1)
F. Wei, S. Ueno, T. Ujino-Ihara, M. Saito +6 more
2021PLoS ONE10 citations Open access
Semantic Scholar
Interspecific variation in clonality in temperate lianas revealed by genetic analysis: Do clonal proliferation processes differ among lianas?
Hideki Mori, S. Ueno, T. Kamijo, Y. Tsumura +1 more
2021Plant Species Biology10 citations Open access
Semantic Scholar

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K. Uchiyama — researcher profile on SciRah
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