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E. Ruppé · SciRah

Researcher profile · Semantic Scholar

E. Ruppé

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E. Ruppé — researcher profile on SciRah

h-index: 46
Works: 139
Citations: 9,936

Most-cited papers

ResFinder 4.0 for predictions of phenotypes from genotypes
V. Bortolaia, R. Kaas, E. Ruppé, M. Roberts +31 more
2020Journal of Antimicrobial Chemotherapy3,039 citations Open access
Semantic Scholar
Mechanisms of antimicrobial resistance in Gram-negative bacilli
E. Ruppé, P. Woerther, F. Barbier
2015Annals of Intensive Care454 citations Open access
Semantic Scholar
Bloodstream infections in critically ill patients: an expert statement
J. Timsit, E. Ruppé, F. Barbier, Alexis Tabah +1 more
2020Intensive Care Medicine398 citations Open access
Semantic Scholar
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
P. Munk, B. Knudsen, O. Lukjancenko, Ana Sofia R. Duarte +36 more
2018Nature Microbiology272 citations Open access
Semantic Scholar
Antimicrobial resistance in the next 30 years, humankind, bugs and drugs: a visionary approach
M. Bassetti, G. Poulakou, E. Ruppé, E. Bouza +2 more
2017Intensive Care Medicine249 citations
Semantic Scholar
Rationalizing antimicrobial therapy in the ICU: a narrative review
J. Timsit, M. Bassetti, O. Cremer, G. Daikos +12 more
2019Intensive Care Medicine234 citations Open access
Semantic Scholar
Towards monitoring of antimicrobial resistance in the environment: For what reasons, how to implement it, and what are the data needs?
J. Bengtsson-Palme, A. Abramova, T. Berendonk, Luis Pedro Coelho +16 more
2023Environment International158 citations Open access
Semantic Scholar
Protection of the Human Gut Microbiome From Antibiotics
J. de Gunzburg, A. Ghozlane, A. Ducher, E. Le Chatelier +14 more
2017bioRxiv158 citations Open access
Semantic Scholar
In-depth resistome analysis by targeted metagenomics
V. Lanza, F. Baquero, J. Martínez, R. Ramos-Ruíz +10 more
2017Microbiome140 citations Open access
Semantic Scholar
Machine learning in the clinical microbiology laboratory: has the time come for routine practice?
N. Peiffer-Smadja, S. Dellière, C. Rodriguez, G. Birgand +3 more
2020Clinical Microbiology and Infection111 citations Open access
Semantic Scholar
Prediction of the intestinal resistome by a three-dimensional structure-based method
E. Ruppé, A. Ghozlane, J. Tap, N. Pons +32 more
2018Nature Microbiology91 citations Open access
Semantic Scholar
Clinical metagenomics of bone and joint infections: a proof of concept study
E. Ruppé, V. Lazarevic, M. Girard, W. Mouton +3 more
2016Scientific Reports89 citations Open access
Semantic Scholar
University of Birmingham Prediction of the intestinal resistome by a three-dimensional structure-based method
E. Ruppé, A. Ghozlane, J. Tap, N. Pons +29 more
201883 citations
Semantic Scholar
Digestive tract colonization by multidrug-resistant Enterobacteriaceae in travellers: An update.
E. Ruppé, A. Andremont, L. Armand-Lefèvre
2017Travel Medicine and Infectious Disease77 citations
Semantic Scholar
ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics
R. Gschwind, Svetlana Ugarcina Perovic, Maja Weiss, M. Petitjean +3 more
2023bioRxiv70 citations Open access
Semantic Scholar
Impact of rapid multiplex PCR on management of antibiotic therapy in COVID-19-positive patients hospitalized in intensive care unit
N. Maataoui, Lotfi Chemali, Juliette Patrier, Alexy Tran Dinh +10 more
2021European Journal of Clinical Microbiology and Infectious Diseases69 citations Open access
Semantic Scholar
The role of the microbiota in the management of intensive care patients
Piotr Szychowiak, Khanh Villageois-Tran, Juliette Patrier, J. Timsit +1 more
2022Annals of Intensive Care67 citations Open access
Semantic Scholar
Carbapenems and alternative β-lactams for the treatment of infections due to extended-spectrum β-lactamase-producing Enterobacteriaceae: What impact on intestinal colonisation resistance?
P. Woerther, R. Lepeule, C. Burdet, J. Decousser +2 more
2018International Journal of Antimicrobial Agents60 citations
Semantic Scholar
Impact of antibiotics on the intestinal microbiota needs to be re-defined to optimize antibiotic usage.
E. Ruppé, C. Burdet, N. Grall, V. de Lastours +3 more
2018Clinical Microbiology and Infection59 citations Open access
Semantic Scholar
A Global Declaration on Appropriate Use of Antimicrobial Agents across the Surgical Pathway
M. Sartelli, Y. Kluger, L. Ansaloni, J. Carlet +234 more
2017Surgical Infections56 citations Open access
Semantic Scholar
Detection of Bacterial Pathogens from Broncho-Alveolar Lavage by Next-Generation Sequencing
Stefano Leo, N. Gaïa, E. Ruppé, S. Emonet +3 more
2017International Journal of Molecular Sciences50 citations Open access
Semantic Scholar
The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies
A. Angers-Loustau, M. Petrillo, J. Bengtsson-Palme, T. Berendonk +17 more
2018F1000Research49 citations Open access
Semantic Scholar
The intestinal microbiota predisposes to traveler’s diarrhea and to the carriage of multidrug-resistant Enterobacteriaceae after traveling to tropical regions
Stefano Leo, V. Lazarevic, N. Gaïa, C. Estellat +6 more
2019Gut microbes48 citations Open access
Semantic Scholar
Different epidemiology of bloodstream infections in COVID-19 compared to non-COVID-19 critically ill patients: a descriptive analysis of the Eurobact II study
N. Buetti, Alexis Tabah, Ambre Loiodice, S. Ruckly +128 more
2022Critical Care47 citations Open access
Semantic Scholar
The Potential Role of Clinical Metagenomics in Infectious Diseases: Therapeutic Perspectives
C. d'Humières, M. Salmona, S. Dellière, Stefano Leo +8 more
2021Drugs46 citations Open access
Semantic Scholar
Establishing Genotype-to-Phenotype Relationships in Bacteria Causing Hospital-Acquired Pneumonia: A Prelude to the Application of Clinical Metagenomics
E. Ruppé, A. Cherkaoui, V. Lazarevic, S. Emonet +1 more
2017Antibiotics46 citations Open access
Semantic Scholar
Escherichia coli Population Structure and Antibiotic Resistance at a Buffalo/Cattle Interface in Southern Africa
M. Mercat, O. Clermont, M. Massot, E. Ruppé +7 more
2015Applied and Environmental Microbiology44 citations Open access
Semantic Scholar
Travel and acquisition of multidrug-resistant Enterobacteriaceae.
L. Armand-Lefèvre, A. Andremont, E. Ruppé
2018Médecine et maladies infectieuses43 citations
Semantic Scholar
Clonal or not clonal? Investigating hospital outbreaks of KPC-producing Klebsiella pneumoniae with whole-genome sequencing.
E. Ruppé, F. Olearo, D. Pires, D. Baud +7 more
2017Clinical Microbiology and Infection42 citations Open access
Semantic Scholar
Structure-based classification of class A beta-lactamases, an update.
A. Philippon, H. Jacquier, E. Ruppé, R. Labia
2019Current Research in Translational Medicine36 citations
Semantic Scholar
Two original observations concerning bacterial infections in COVID-19 patients hospitalized in intensive care units during the first wave of the epidemic in France
D, Camille Humières, Juliette Patrier, B. Lortat-Jacob +10 more
2021medRxiv33 citations Open access
Semantic Scholar
Clinical metagenomics for the management of hospital- and healthcare-acquired pneumonia.
E. Ruppé, D. Baud, S. Schicklin, G. Guigon +1 more
2016Future Microbiology33 citations Open access
Semantic Scholar
Dissemination of the mcr-1 colistin resistance gene.
E. Ruppé, E. Le Chatelier, N. Pons, Antoine Andremont +1 more
2016Lancet. Infectious Diseases (Print)33 citations Open access
Semantic Scholar
From genotype to antibiotic susceptibility phenotype in the order Enterobacterales: a clinical perspective.
E. Ruppé, A. Cherkaoui, Yannick Charretier, M. Girard +3 more
2020Clinical Microbiology and Infection32 citations Open access
Semantic Scholar
Evaluation of SARS-CoV-2 in semen, seminal plasma, and spermatozoa pellet of COVID-19 patients in the acute stage of infection
L. Delaroche, M. Bertine, P. Oger, D. Descamps +8 more
2021PLoS ONE31 citations Open access
Semantic Scholar
Messages from the first International Conference on Clinical Metagenomics (ICCMg).
E. Ruppé, Gilbert GREUB, J. Schrenzel
2017Microbes and infection29 citations Open access
Semantic Scholar
Semi-quantitative cultures of throat and rectal swabs are efficient tests to predict ESBL-Enterobacterales ventilator-associated pneumonia in mechanically ventilated ESBL carriers
O. Andremont, L. Armand-Lefèvre, C. Dupuis, É. de Montmollin +11 more
2020Intensive Care Medicine27 citations Open access
Semantic Scholar
Intestinal carriage of Extended Spectrum Beta-Lactamase producing E. coli in women with urinary tract infections, Cameroon.
I. Djuikoue, P. Woerther, M. Toukam, C. Burdet +11 more
2016Journal of Infection in Developing Countries27 citations Open access
Semantic Scholar
Dissemination of carbapenemase-producing Enterobacterales in the community of Rawalpindi, Pakistan
Amina Habib, Stéphane Lo, Khanh Villageois-Tran, M. Petitjean +4 more
2022PLoS ONE26 citations Open access
Semantic Scholar
Impact of a short exposure to levofloxacin on faecal densities and relative abundance of total and quinolone-resistant Enterobacteriaceae.
J. Bernard, L. Armand-Lefèvre, E. Luce, A. El-Mniai +4 more
2016Clinical Microbiology and Infection25 citations Open access
Semantic Scholar
Community-acquired infection caused by the uncommon hypervirulent Klebsiella pneumoniae ST66-K2 lineage
C. Rodrigues, C. d'Humières, G. Papin, V. Passet +2 more
2020Microbial Genomics24 citations Open access
Semantic Scholar
Molecular characterization of fluoroquinolones, macrolides, and imipenem resistance in Haemophilus influenzae: analysis of the mutations in QRDRs and assessment of the extent of the AcrAB-TolC-mediated resistance
A. Cherkaoui, N. Gaïa, D. Baud, Stefano Leo +4 more
2018European Journal of Clinical Microbiology and Infectious Diseases23 citations Open access
Semantic Scholar
The gut microbiota of critically ill patients: first steps in an unexplored world
E. Ruppé, T. Lisboa, F. Barbier
2018Intensive Care Medicine22 citations Open access
Semantic Scholar
Universal or targeted approach to prevent the transmission of extended-spectrum beta-lactamase-producing Enterobacteriaceae in intensive care units: a cost-effectiveness analysis
L. Kardaś-Słoma, J. Lucet, A. Perozziello, C. Pelat +5 more
2017BMJ Open21 citations Open access
Semantic Scholar
Messages from the second International Conference on Clinical Metagenomics (ICCMg2).
E. Ruppé, J. Schrenzel
2018Microbes and infection20 citations Open access
Semantic Scholar
Deciphering polymorphism in 61,157 Escherichia coli genomes via epistatic sequence landscapes
L. Vigué, G. Croce, M. Petitjean, E. Ruppé +2 more
2022Nature Communications19 citations Open access
Semantic Scholar
Dynamics of extended-spectrum beta-lactamase-producing Enterobacterales colonization in long-term carriers following travel abroad
L. Armand-Lefèvre, E. Rondinaud, D. Desvillechabrol, J. Mullaert +12 more
2021Microbial Genomics19 citations Open access
Semantic Scholar
Inferring antibiotic susceptibility from metagenomic data: dream or reality?
E. Ruppé, C. d'Humières, L. Armand-Lefèvre
2022Clinical Microbiology and Infection17 citations Open access
Semantic Scholar
International circulation of aztreonam/avibactam-resistant NDM-5-producing Escherichia coli isolates: successful epidemic clones.
Mustafa Sadek, E. Ruppé, Amina Habib, R. Zahra +2 more
2021Journal of Global Antimicrobial Resistance17 citations Open access
Semantic Scholar
Relationship between the composition of the intestinal microbiota and the tracheal and intestinal colonization by opportunistic pathogens in intensive care patients
Candice Fontaine, L. Armand-Lefèvre, M. Magnan, Anissa Nazimoudine +2 more
2020PLoS ONE16 citations Open access
Semantic Scholar

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