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A. Arnott · SciRah

Researcher profile · Semantic Scholar

A. Arnott

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A. Arnott — researcher profile on SciRah

h-index: 22
Works: 54
Citations: 2,053

Most-cited papers

Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling
R. J. Rockett, A. Arnott, C. Lam, R. Sadsad +21 more
2020Nature Medicine319 citations Open access
Semantic Scholar
Resistance Mutations in SARS-CoV-2 Delta Variant after Sotrovimab Use
R. Rockett, K. Basile, S. Maddocks, W. Fong +22 more
2022New England Journal of Medicine154 citations Open access
Semantic Scholar
An emergent clade of SARS-CoV-2 linked to returned travellers from Iran
J. Eden, R. Rockett, I. Carter, H. Rahman +29 more
2020bioRxiv147 citations Open access
Semantic Scholar
Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch
Á. O'Toole, V. Hill, O. Pybus, A. Watts +85 more
2021Wellcome Open Research127 citations Open access
Semantic Scholar
Understanding the population genetics of Plasmodium vivax is essential for malaria control and elimination
A. Arnott, Alyssa E. Barry, J. Reeder
2012Malaria Journal126 citations Open access
Semantic Scholar
Epidemiologic Evidence for Airborne Transmission of SARS-CoV-2 during Church Singing, Australia, 2020
A. Katelaris, Jessica Wells, Penelope Clark, Sophie Norton +5 more
2021Emerging Infectious Diseases117 citations Open access
Semantic Scholar
Strategies for Designing and Monitoring Malaria Vaccines Targeting Diverse Antigens
Alyssa E. Barry, A. Arnott
2014Frontiers in Immunology109 citations Open access
Semantic Scholar
A Study of the Genetic Variability of Human Respiratory Syncytial Virus (HRSV) in Cambodia Reveals the Existence of a New HRSV Group B Genotype
A. Arnott, Sirenda Vong, S. Mardy, S. Chu +12 more
2011Journal of Clinical Microbiology106 citations Open access
Semantic Scholar
Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance
R. Rockett, J. Draper, M. Gall, E. Sim +21 more
2022Nature Communications93 citations Open access
Semantic Scholar
Plasmodium vivax Populations Are More Genetically Diverse and Less Structured than Sympatric Plasmodium falciparum Populations
C. Jennison, A. Arnott, N. Tessier, L. Tavul +7 more
2015PLoS Neglected Tropical Diseases85 citations Open access
Semantic Scholar
Genetic variability of human metapneumovirus amongst an all ages population in Cambodia between 2007 and 2009
A. Arnott, Sirenda Vong, Mardy Sek, M. Naughtin +5 more
2011Infection, Genetics and Evolution69 citations Open access
Semantic Scholar
Global Population Structure of the Genes Encoding the Malaria Vaccine Candidate, Plasmodium vivax Apical Membrane Antigen 1 (PvAMA1)
A. Arnott, I. Mueller, P. Ramsland, P. Siba +2 more
2013PLoS Neglected Tropical Diseases60 citations Open access
Semantic Scholar
Multidrug-Resistant Salmonella enterica 4,[5],12:i:- Sequence Type 34, New South Wales, Australia, 2016–2017
A. Arnott, Qinning Wang, N. Bachmann, R. Sadsad +7 more
2018Emerging Infectious Diseases55 citations Open access
Semantic Scholar
Structurally conserved erythrocyte-binding domain in Plasmodium provides a versatile scaffold for alternate receptor engagement
J. Gruszczyk, Nicholas T. Y. Lim, A. Arnott, Wen-Qiang He +10 more
2015Proceedings of the National Academy of Sciences of the United States of America53 citations Open access
Semantic Scholar
SARS-CoV-2 Genome Sequencing Methods Differ in Their Abilities To Detect Variants from Low-Viral-Load Samples
C. Lam, K. Gray, M. Gall, R. Sadsad +8 more
2021Journal of Clinical Microbiology40 citations Open access
Semantic Scholar
A Registry for Patients With Asplenia/Hyposplenism Reduces the Risk of Infections With Encapsulated Organisms
A. Arnott, Penelope A. Jones, L. Franklin, D. Spelman +2 more
2018Clinical Infectious Diseases40 citations Open access
Semantic Scholar
Distinct patterns of diversity, population structure and evolution in the AMA1 genes of sympatric Plasmodium falciparum and Plasmodium vivax populations of Papua New Guinea from an area of similarly high transmission
A. Arnott, J. Wapling, I. Mueller, P. Ramsland +3 more
2014Malaria Journal38 citations Open access
Semantic Scholar
High Viral Fitness during Acute HIV-1 Infection
A. Arnott, D. Jardine, K. Wilson, P. Gorry +7 more
2010PLoS ONE36 citations Open access
Semantic Scholar
Revealing COVID-19 Transmission by SARS-CoV-2 Genome Sequencing and Agent Based Modelling
R. Rockett, A. Arnott, C. Lam, R. Sadsad +20 more
2020bioRxiv35 citations Open access
Semantic Scholar
Improved neutralization of the SARS-CoV-2 Omicron variant after Pfizer-BioNTech BNT162b2 COVID-19 vaccine boosting
K. Basile, R. Rockett, K. Mcphie, M. Fennell +14 more
202134 citations
Semantic Scholar
High genetic diversity of Plasmodium vivax on the north coast of Papua New Guinea.
A. Arnott, C. Barnadas, Nicolas Senn, P. Siba +3 more
2013American Journal of Tropical Medicine and Hygiene25 citations Open access
Semantic Scholar
Human bocavirus amongst an all‐ages population hospitalised with acute lower respiratory infections in Cambodia
A. Arnott, Sirenda Vong, Sareth Rith, M. Naughtin +4 more
2012Influenza and Other Respiratory Viruses23 citations Open access
Semantic Scholar
Advances in laboratory testing for HIV.
E. Dax, A. Arnott
2004Pathology (Sydney)21 citations
Semantic Scholar
COVID-19 Infection With the Omicron SARS-CoV-2 Variant in a Cohort of Kidney and Kidney Pancreas Transplant Recipients: Clinical Features, Risk Factors, and Outcomes
G. Wong, Matthew Rowlandson, Dharshana Sabanayagam, A. Ginn +9 more
2022Transplantation16 citations Open access
Semantic Scholar
GENOME-WIDE NETWORKS REVEAL EMERGENCE OF EPIDEMIC STRAINS OF SALMONELLA ENTERITIDIS.
Adam J. Svahn, S. Chang, R. Rockett, Oliver M. Cliff +6 more
2022International Journal of Infectious Diseases11 citations Open access
Semantic Scholar
SABRes: in silico detection of drug resistance conferring mutations in subpopulations of SARS-CoV-2 genomes
W. Fong, R. Rockett, J. Agius, S. Chandra +12 more
2023BMC Infectious Diseases10 citations Open access
Semantic Scholar
Documenting elimination of co-circulating COVID-19 clusters using genomics in New South Wales, Australia
A. Arnott, J. Draper, R. Rockett, C. Lam +10 more
2021BMC Research Notes10 citations Open access
Semantic Scholar
Risk factors leading to COVID‐19 cases in a Sydney restaurant
A. Capon, Jody Houston, R. Rockett, V. Sheppeard +4 more
2021Australian and New Zealand Journal of Public Health9 citations Open access
Semantic Scholar
Guiding the design of SARS-CoV-2 genomic surveillance by estimating the resolution of outbreak detection
Carl J E Suster, A. Arnott, Grace A. Blackwell, M. Gall +8 more
2022Frontiers in Public Health8 citations Open access
Semantic Scholar
Improved Neutralisation of the SARS-CoV-2 Omicron Variant following a Booster Dose of Pfizer-BioNTech (BNT162b2) COVID-19 Vaccine
K. Basile, R. Rockett, K. Mcphie, M. Fennell +15 more
2022Viruses8 citations Open access
Semantic Scholar
Genomic Surveillance Enables Suitability Assessment of Salmonella Gene Targets Used for Culture-Independent Diagnostic Testing
R. Rockett, A. Arnott, Qinning Wang, Peter J. Howard +1 more
2020Journal of Clinical Microbiology8 citations Open access
Semantic Scholar
Novel Salmonella enterica Serovar Typhimurium Genotype Levels as Herald of Seasonal Salmonellosis Epidemics
C. Sotomayor, Qinning Wang, A. Arnott, Peter J. Howard +3 more
2018Emerging Infectious Diseases8 citations Open access
Semantic Scholar
RESISTANCE CONFERRING MUTATIONS IN SARS-CoV-2 DELTA FOLLOWING SOTROVIMAB INFUSION
R. Rockett, K. Basile, S. Maddocks, W. Fong +22 more
2021medRxiv7 citations Open access
Semantic Scholar
Pangenome Analysis of a Salmonella Enteritidis Population Links a Major Outbreak to a Gifsy-1-Like Prophage Containing Anti-Inflammatory Gene gogB
Adam J. Svahn, Carl J E Suster, S. Chang, R. Rockett +8 more
2023Microbiology spectrum6 citations Open access
Semantic Scholar
SARS-CoV-2 Within-Host and in vitro Genomic Variability and Sub-Genomic RNA Levels Indicate Differences in Viral Expression Between Clinical Cohorts and in vitro Culture
J. Agius, Jessica Johnson-Mackinnon, W. Fong, M. Gall +6 more
2022Frontiers in Microbiology6 citations Open access
Semantic Scholar
Added Value of Genomic Surveillance of Virulence Factors in Shiga Toxin-Producing Escherichia coli in New South Wales, Australia
E. Sim, Ryan Kim, M. Gall, A. Arnott +4 more
2021Frontiers in Microbiology6 citations Open access
Semantic Scholar
Extremely prolonged HIV seroconversion associated with an MHC haplotype carrying disease susceptibility genes for antibody deficiency disorders.
A. Padiglione, Eman Aleksic, M. French, A. Arnott +13 more
2010Clinical Immunology6 citations
Semantic Scholar
SARS-CoV-2 Genome Sequencing Methods Differ In Their Ability To Detect Variants From Low Viral Load Samples
C. Lam, K. Gray, M. Gall, R. Sadsad +8 more
2021bioRxiv5 citations Open access
Semantic Scholar
Consecutive Influenza Infections in Both Adults and Children.
A. Arnott, K. Carville, L. Franklin, S. Sullivan
2017Journal of Infectious Diseases5 citations
Semantic Scholar
Using Population Genetics to Guide Malaria Vaccine Design
Alyssa E. Barry, James G. Beeson, J. Reeder, F. Fowkes +1 more
20125 citations Open access
Semantic Scholar
Improved neutralisation of the SARS-CoV-2 Omicron variant after Pfizer-BioNTech (BNT162b2) COVID-19 vaccine boosting with a third dose
K. Basile, R. Rockett, K. Mcphie, M. Fennell +15 more
2021bioRxiv4 citations Open access
Semantic Scholar
Understanding the population genetics of Plasmodium vivax is essential for malaria control and elimination
A. Arnott, Alyssa E. Barry, J. Reeder
2012Malaria Journal2 citations Open access
Semantic Scholar
Molecular epidemiology of human metapneumovirus (hMPV) in Cambodia
A. Arnott, Mardy Sek, Sirenda Vong, P. Buchy
2011BMC Proceedings2 citations Open access
Semantic Scholar
Genome entropy and network centrality contrast exploration and exploitation in evolution of foodborne pathogens
S. Chang, Carl J E Suster, R. Rockett, Adam J. Svahn +9 more
2023Physical Biology1 citations Open access
Semantic Scholar
Emergent Omicron BR.2.1 sublineage of SARS-CoV-2 in New South Wales, Australia: a subvariant with high fitness but without increased disease severity
A. Howard-Jones, A. Arnott, J. Draper, M. Gall +7 more
2023International Journal of Infectious Diseases1 citations Open access
Semantic Scholar
INTRACYTOPLASMIC SPERM INJECTION (ICSI) DOES NOT PROVIDE ANY BENEFIT OVER IN VITRO FERTILIZATION (IVF) ON PLOIDY RATES IN NON-MALE FACTOR INFERTILITY CYCLES UNDERGOING PRE-IMPLANTATION GENETIC TESTING FOR ANEUPLOIDY (PGT-A)
Jessica Tozour, A. Brady, M. Akerman, A. Arnott +2 more
2020Fertility and Sterility1 citations Open access
Semantic Scholar
DOES INTRACYTOPLASMIC SPERM INJECTION (ICSI) PROVIDE ANY BENEFIT OVER IN VITRO FERTILIZATION (IVF) ON PREGNANCY OUTCOMES IN NON-MALE FACTOR INFERTILITY CYCLES UNDERGOING PRE-IMPLANTATION GENETIC TESTING FOR ANEUPLOIDY (PGT-A)?
Jessica Tozour, A. Brady, M. Akerman, A. Arnott +2 more
20201 citations Open access
Semantic Scholar
Genomic evolution of SARS-CoV-2 variants of concern under in vitro neutralising selection pressure following two doses of the Pfizer-BioNTech BNT162b2 COVID-19 vaccine
K. Basile, J. Agius, W. Fong, K. Mcphie +12 more
2023bioRxiv0 citations Open access
Semantic Scholar
Communicable Diseases Intelligence
David N. Durrheim, M. Ferson, Clare Huppatz, J. Kaldor +13 more
20230 citations
Semantic Scholar
First documented gymnasium cluster of COVID-19 with whole genome sequencing in Australia.
Bhavi Ravindran, Elizabeth Gatens, Naru Pal, V. Sheppeard +6 more
2023Communicable diseases intelligence0 citations Open access
Semantic Scholar

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