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J. Siebert · SciRah

Researcher profile · Semantic Scholar

J. Siebert

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J. Siebert — researcher profile on SciRah

h-index: 19
Works: 49
Citations: 1,822

Most-cited papers

PD-1 blockade expands intratumoral T memory cells
A. Ribas, D. Shin, J. Zaretsky, Juliet Frederiksen +13 more
2016Cancer immunology research344 citations Open access
Semantic Scholar
Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants
Ying Jin, Genevieve Andersen, D. Yorgov, T. Ferrara +40 more
2016Nature Genetics318 citations Open access
Semantic Scholar
Phase 1 Study of Stereotactic Body Radiotherapy and Interleukin-2—Tumor and Immunological Responses
S. Seung, B. Curti, M. Crittenden, E. Walker +7 more
2012Science Translational Medicine311 citations
Semantic Scholar
Large-Scale and Comprehensive Immune Profiling and Functional Analysis of Normal Human Aging
Chan C. Whiting, J. Siebert, A. Newman, Hong-wu Du +6 more
2015PLoS ONE103 citations Open access
Semantic Scholar
Early-onset autoimmune vitiligo associated with an enhancer variant haplotype that upregulates class II HLA expression
Ying Jin, G. Roberts, T. Ferrara, Songtao Ben +8 more
2019Nature Communications62 citations Open access
Semantic Scholar
Novel circulating and tissue monocytes as well as macrophages in pancreatitis and recovery
M. Manohar, Elaina K. Jones, Samuel J. S. Rubin, Priyanka B. Subrahmanyam +12 more
2021Gastroenterology59 citations Open access
Semantic Scholar
Expression profiling in canine osteosarcoma: identification of biomarkers and pathways associated with outcome
Liza E. O’Donoghue, A. Ptitsyn, D. Kamstock, J. Siebert +2 more
2010BMC Cancer57 citations Open access
Semantic Scholar
Functional intraepithelial lymphocyte changes in inflammatory bowel disease and spondyloarthritis have disease specific correlations with intestinal microbiota
E. Regner, Neha Ohri, A. Stahly, M. Gerich +9 more
2018Arthritis Research & Therapy45 citations Open access
Semantic Scholar
Functional T cell responses to tumor antigens in breast cancer patients have a distinct phenotype and cytokine signature.
M. Inokuma, Corazon delaRosa, C. Schmitt, P. Haaland +10 more
2007Journal of Immunology40 citations
Semantic Scholar
Multiparameter Phospho-Flow Analysis of Lymphocytes in Early Rheumatoid Arthritis: Implications for Diagnosis and Monitoring Drug Therapy
C. Galligan, J. Siebert, K. Siminovitch, E. Keystone +3 more
2009PLoS ONE36 citations Open access
Semantic Scholar
Haplotype analysis discriminates genetic risk for DR3-associated endocrine autoimmunity and helps define extreme risk for Addison's disease.
Peter R Baker, Erin E. Baschal, P. Fain, Taylor M. Triolo +8 more
2010Journal of Clinical Endocrinology and Metabolism35 citations Open access
Semantic Scholar
Analyses of Pre-therapy Peripheral Immunoscore and Response to Vaccine Therapy
B. Farsaci, R. Donahue, I. Grenga, L. Lepone +8 more
2016Cancer immunology research32 citations Open access
Semantic Scholar
An analytical workflow for investigating cytokine profiles
J. Siebert, M. Inokuma, Dan M. Waid, Nathan D. Pennock +5 more
2008Cytometry Part A30 citations Open access
Semantic Scholar
Immune Profiles to Predict Response to Desensitization Therapy in Highly HLA-Sensitized Kidney Transplant Candidates
J. Yabu, J. Siebert, H. Maecker
2016PLoS ONE27 citations Open access
Semantic Scholar
The HLA-B*3906 allele imparts a high risk of diabetes only on specific HLA-DR/DQ haplotypes
Erin E. Baschal, Peter R Baker, Kenneth R. Eyring, J. Siebert +2 more
2011Diabetologia27 citations Open access
Semantic Scholar
Immunotherapy biomarkers 2016: overcoming the barriers
J. Gulley, J. Berzofsky, M. Butler, A. Cesano +17 more
2017Journal of Immunotherapy for Cancer26 citations Open access
Semantic Scholar
Monitoring cytokine profiles during immunotherapy.
J. Siebert, E. Walker
2010Immunotherapy25 citations
Semantic Scholar
Systematic evaluation of immune regulation and modulation
D. Stroncek, L. Butterfield, M. Cannarile, M. Dhodapkar +11 more
2017Journal of Immunotherapy for Cancer24 citations Open access
Semantic Scholar
Functional T Cell Responses to Tumor Antigens in Breast Cancer Patients Have a Distinct Phenotype and Cytokine Signature1
M. Inokuma, Corazon delaRosa, C. Schmitt, P. Haaland +10 more
2007Journal of Immunology19 citations Open access
Semantic Scholar
Elevated inflammatory fecal immune factors in men who have sex with men with HIV associate with microbiome composition and gut barrier function
Katherine M. Littlefield, J. Schneider, C. Neff, Victoria Soesanto +8 more
2022Frontiers in Immunology18 citations Open access
Semantic Scholar
Acute Chelation Therapy Associated Changes in Urine Gadolinium, Self-reported Flare Severity, and Serum Cytokines in Gadolinium Deposition Disease
H. Maecker, J. Siebert, Y. Rosenberg-Hasson, L. Koran +2 more
2021Investigative Radiology17 citations Open access
Semantic Scholar
Multi-omic predictors of short-term weight loss and clinical outcomes during a behavioral-based weight loss intervention
J. Siebert, Maggie A. Stanislawski, A. Zaman, Danielle M. Ostendorf +14 more
2021Obesity16 citations Open access
Semantic Scholar
Dominant suppression of Addison's disease associated with HLA-B15.
Peter R Baker, Erin E. Baschal, P. Fain, Priyaanka Nanduri +8 more
2011Journal of Clinical Endocrinology and Metabolism16 citations Open access
Semantic Scholar
Evaluation of a minimal array of Treponema pallidum antigens as biomarkers for syphilis diagnosis, infection staging, and response to treatment
Austin M. Haynes, K. Konda, Emily Romeis, J. Siebert +6 more
2023Microbiology spectrum13 citations Open access
Semantic Scholar
Integrating and mining diverse data in human immunological studies.
J. Siebert, Brandie D. Wagner, E. Juarez-colunga
2014Bioanalysis12 citations Open access
Semantic Scholar
Dynamic Serial Cytokine Measurements During Intravenous Ca-DTPA Chelation in Gadolinium Deposition Disease and Gadolinium Storage Condition: A Pilot Study
H. Maecker, J. Siebert, Y. Rosenberg-Hasson, L. Koran +2 more
2021Investigative Radiology11 citations Open access
Semantic Scholar
VOLARE: visual analysis of disease-associated microbiome-immune system interplay
J. Siebert, C. Neff, J. Schneider, E. Regner +5 more
2018BMC Bioinformatics10 citations Open access
Semantic Scholar
Replication and Further Characterization of a Type 1 Diabetes-Associated Locus at the Telomeric End of the Major Histocompatibility Complex
Erin E. Baschal, S. Sarkar, Theresa Boyle, J. Siebert +8 more
2011Journal of Diabetes10 citations Open access
Semantic Scholar
Exhaustive expansion: A novel technique for analyzing complex data generated by higher-order polychromatic flow cytometry experiments
J. Siebert, Lian Wang, D. Haley, A. Rømer +4 more
2010Journal of Translational Medicine10 citations Open access
Semantic Scholar
HIV infection is associated with loss of anti-inflammatory alveolar macrophages
C. Neff, Shaikh M. Atif, Eric C. Logue, J. Siebert +7 more
2020Journal of Immunology9 citations Open access
Semantic Scholar
Cytokine expression in Treponema pallidum infection
N. Kojima, J. Siebert, H. Maecker, Y. Rosenberg-Hasson +5 more
2019Journal of Translational Medicine9 citations Open access
Semantic Scholar
Visualizing microbiome-immune system interplay.
J. Siebert, Carsten Görg, B. Palmer, C. Lozupone
2019Immunotherapy8 citations Open access
Semantic Scholar
Simultaneous recognition of allogeneic MHC and cognate autoantigen by autoreactive T cells in transplant rejection
A. Burrack, L. Landry, J. Siebert, M. Coulombe +2 more
2018Journal of Immunology8 citations Open access
Semantic Scholar
The Stanford Data Miner: a novel approach for integrating and exploring heterogeneous immunological data
J. Siebert, W. Munsil, Y. Rosenberg-Hasson, Mark M. Davis +1 more
2012Journal of Translational Medicine8 citations Open access
Semantic Scholar
CANTARE: finding and visualizing network-based multi-omic predictive models
J. Siebert, Martine Saint-Cyr, S. Borengasser, Brandie D. Wagner +2 more
2021BMC Bioinformatics7 citations Open access
Semantic Scholar
The application of cytokine expression assays to differentiate active from previously treated syphilis.
N. Kojima, J. Siebert, H. Maecker, Y. Rosenberg-Hasson +5 more
2020Journal of Infectious Diseases5 citations Open access
Semantic Scholar
1 PD-1 blockade expands intratumoral T memory cells
A. Ribas, D. Shin, J. Zaretsky, Juliet Frederiksen +13 more
20164 citations
Semantic Scholar
Congruence as a measurement of extended haplotype structure across the genome
Erin E. Baschal, J. Jasinski, Theresa Boyle, P. Fain +2 more
2012Journal of Translational Medicine4 citations Open access
Semantic Scholar
Integrated biomarker discovery: combining heterogeneous data.
J. Siebert
2011Bioanalysis4 citations
Semantic Scholar
A rich analytical environment for flow cytometry experimental results
J. Siebert, K. Cios, M. Newell
2006International Journal of Bioinformatics Research and Applications3 citations
Semantic Scholar
Loss of anti-inflammatory alveolar macrophages associates with lung inflammation in untreated HIV infection
C. Neff, Eric C. Logue, J. Siebert, Carsten Görg +5 more
2020Journal of Immunology1 citations
Semantic Scholar
Discrete Plasma Cytokine Profiles among Pregnant Women in Botswana by Chlamydia trachomatis infection, HIV status, and Gestational age.
Chibuzor M. Babalola, J. Siebert, S. Kallapur, H. Maecker +8 more
2022Journal of Infectious Diseases0 citations Open access
Semantic Scholar
Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and 1 highlight key pathways and regulatory variants 2
Ying Jin, Genevieve Andersen, D. Yorgov, T. Ferrara +45 more
20160 citations
Semantic Scholar
Evaluation of circulating tumor cell gene expression profiles before and following combination immunotherapy for advanced prostate cancer
Sachin Puri, Jing Han, B. Joshi, D. Healy +7 more
2014Journal of Immunotherapy for Cancer0 citations Open access
Semantic Scholar
A Novel Colorectal Cancer Vaccine Consisting of Multiple Naturally Presented Peptides
S. Walter, Sabrina Kuttruff, A. Mayer, Oliver +41 more
20120 citations
Semantic Scholar
"The most valuable biomarkers may well be integrated sets, best discovered through the systematic application of multianalyte assays from a variety of instrument platforms, spanning several levels of biological processes."
J. Siebert
20110 citations
Semantic Scholar
Multiparameter phospho-flow analysis of peripheral blood in early rheumatoid arthritis
C. Galligan, J. Siebert, K. Siminovitch, E. Keystone +3 more
20090 citations
Semantic Scholar
Data Analysis Protocols for Identifying Cytokine Signatures in Breast Cancer and Type 1 Diabetes
J. Siebert, M. Inokuma, N. Pennock, D. Waid +5 more
20070 citations
Semantic Scholar
This information is current as Distinct Phenotype and Cytokine Signature Antigens in Breast Cancer Patients Have a Functional T Cell Responses to Tumor
M. Inokuma, C. D. Rosa, C. Schmitt, P. Haaland +10 more
20070 citations
Semantic Scholar

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