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A. Raine · SciRah

Researcher profile · Semantic Scholar

A. Raine

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A. Raine — researcher profile on SciRah

h-index: 21
Works: 54
Citations: 1,391

Most-cited papers

H‐NS‐mediated repression of CRISPR‐based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO
E. Westra, Ü. Pul, Nadja Heidrich, M. Jore +12 more
2010Molecular Microbiology259 citations Open access
Semantic Scholar
Interplay of signal recognition particle and trigger factor at L23 near the nascent chain exit site on the Escherichia coli ribosome
R. Ullers, E. Houben, A. Raine, C. T. ten Hagen-Jongman +5 more
2003Journal of Cell Biology150 citations Open access
Semantic Scholar
Long term orexigenic effect of a novel melanocortin 4 receptor selective antagonist
G. Skuladottir, L. Jonsson, Jon O. Skarphedinsson, F. Mutulis +7 more
1999British Journal of Pharmacology73 citations Open access
Semantic Scholar
Markers of respiratory inflammation in horses in relation to seasonal changes in air quality in a conventional racing stable.
M. Riihimäki, A. Raine, L. Elfman, J. Pringle
2008Canadian journal of veterinary research = Revue canadienne de recherche veterinaire59 citations
Semantic Scholar
SPlinted Ligation Adapter Tagging (SPLAT), a novel library preparation method for whole genome bisulphite sequencing
A. Raine, Erika Manlig, P. Wahlberg, A. Syvänen +1 more
2016Nucleic Acids Research57 citations Open access
Semantic Scholar
Multimodal Single‐Cell Sequencing of B Cells in Primary Sjögren's Syndrome
G. Arvidsson, P. Czarnewski, Alina Johansson, A. Raine +4 more
2023Arthritis & Rheumatology49 citations Open access
Semantic Scholar
Installation of mechanical ventilation in a horse stable: effects on air quality and human and equine airways
R. Wålinder, M. Riihimäki, Susanne Bohlin, C. Hogstedt +4 more
2011Environmental Health and Preventive Medicine49 citations Open access
Semantic Scholar
The SEQC2 epigenomics quality control (EpiQC) study
J. Foox, J. Nordlund, C. Lalancette, Ting Gong +53 more
2020Genome Biology45 citations Open access
Semantic Scholar
Leukocytes with chromosome Y loss have reduced abundance of the cell surface immunoprotein CD99
J. Mattisson, Marcus Danielsson, Maria Hammond, H. Davies +9 more
2021Scientific Reports44 citations Open access
Semantic Scholar
Transcriptome sequencing in pediatric acute lymphoblastic leukemia identifies fusion genes associated with distinct DNA methylation profiles
Yanara Marincevic-Zuniga, J. Dahlberg, S. Nilsson, A. Raine +10 more
2017Journal of Hematology & Oncology44 citations Open access
Semantic Scholar
Trigger Factor Binding to Ribosomes with Nascent Peptide Chains of Varying Lengths and Sequences*
A. Raine, M. Lovmar, J. Wikberg, M. Ehrenberg
2006Journal of Biological Chemistry44 citations Open access
Semantic Scholar
The Mutational Landscape in Pediatric Acute Lymphoblastic Leukemia Deciphered by Whole Genome Sequencing
C. Lindqvist, J. Nordlund, Diana Ekman, Anna C. V. Johansson +17 more
2014Human Mutation43 citations Open access
Semantic Scholar
Simultaneous binding of trigger factor and signal recognition particle to the E. coli ribosome.
A. Raine, N. Ivanova, J. Wikberg, M. Ehrenberg
2004Biochimie43 citations
Semantic Scholar
Deep targeted sequencing in pediatric acute lymphoblastic leukemia unveils distinct mutational patterns between genetic subtypes and novel relapse-associated genes
C. Lindqvist, Anders Lundmark, J. Nordlund, E. Freyhult +13 more
2016OncoTarget42 citations Open access
Semantic Scholar
Targeting and insertion of heterologous membrane proteins in E. coli.
A. Raine, R. Ullers, M. Pavlov, J. Luirink +2 more
2003Biochimie41 citations
Semantic Scholar
Comparison of EM-seq and PBAT methylome library methods for low-input DNA
Ya-Nan Han, G. Zheleznyakova, Yanara Marincevic-Zuniga, M. Kakhki +3 more
2021Epigenetics40 citations Open access
Semantic Scholar
Partial divergence of cytokine mRNA expression in bronchial tissues compared to bronchoalveolar lavage cells in horses with recurrent airway obstruction.
M. Riihimäki, A. Raine, T. Art, P. Lekeux +2 more
2008Veterinary Immunology and Immunopathology34 citations
Semantic Scholar
Environmentally induced DNA methylation is inherited across generations in an aquatic keystone species
Nathalie Feiner, Reinder Radersma, L. Vasquez, M. Ringnér +5 more
2022iScience32 citations Open access
Semantic Scholar
Epithelial expression of mRNA and protein for IL-6, IL-10 and TNF-α in endobronchial biopsies in horses with recurrent airway obstruction
M. Riihimäki, A. Raine, J. Pourazar, T. Sandström +4 more
2008BMC Veterinary Research32 citations Open access
Semantic Scholar
Assessing the role of APNH, a gene encoding for a human amiloride-sensitive Na+/H+ antiporter, on the interindividual variation in red cell Na+/Li+ countertransport.
C. Dudley, L. Giuffra, A. Raine, S. Reeders
1991Journal of the American Society of Nephrology31 citations
Semantic Scholar
Clinical alterations and mRNA levels of IL-4 and IL-5 in bronchoalveolar cells of horses with transient pulmonary eosinophilia.
M. Riihimäki, I. Lilliehöök, A. Raine, M. Berg +1 more
2008Research in Veterinary Science28 citations
Semantic Scholar
Data quality of whole genome bisulfite sequencing on Illumina platforms
A. Raine, U. Liljedahl, J. Nordlund
2017bioRxiv21 citations Open access
Semantic Scholar
Comparison of high-throughput single-cell RNA-seq methods for ex vivo drug screening
Henrik Gezelius, A. P. Enblad, Anders Lundmark, Martin Åberg +8 more
2023bioRxiv18 citations Open access
Semantic Scholar
DNA methylome analysis of acute lymphoblastic leukemia cells reveals stochastic de novo DNA methylation in CpG islands.
P. Wahlberg, Anders Lundmark, J. Nordlund, Stephan Busche +8 more
2016Epigenomics18 citations Open access
Semantic Scholar
Refined detection and phasing of structural aberrations in pediatric acute lymphoblastic leukemia by linked-read whole-genome sequencing
J. Nordlund, Yanara Marincevic-Zuniga, L. Cavelier, A. Raine +6 more
2018Scientific Reports15 citations Open access
Semantic Scholar
Single-cell transcriptomics delineates the immune cell landscape in equine lower airways and reveals upregulation of FKBP5 in horses with asthma
M. Riihimäki, K. Fegraeus, J. Nordlund, I. Waern +4 more
2023Scientific Reports13 citations Open access
Semantic Scholar
Histological characterization of orphan transporter MCT14 (SLC16A14) shows abundant expression in mouse CNS and kidney
Sahar Roshanbin, Frida A Lindberg, Emilia Lekholm, Mikaela M. Eriksson +4 more
2016BMC Neuroscience12 citations Open access
Semantic Scholar
PAT4 is abundantly expressed in excitatory and inhibitory neurons as well as epithelial cells.
Sahar Roshanbin, S. Hellsten, A. Tafreshiha, Yi-Nan Zhu +2 more
2014Brain Research12 citations Open access
Semantic Scholar
Single nucleus transcriptomics data integration recapitulates the major cell types in human liver
Klev Diamanti, Juan Salvador Inda Díaz, A. Raine, G. Pan +2 more
2020Hepatology Research10 citations Open access
Semantic Scholar
scSPLAT, a scalable plate-based protocol for single cell WGBS library preparation
A. Raine, Anders Lundmark, Alva Annett, Ann-Christin Wiman +4 more
2021Scientific Reports8 citations Open access
Semantic Scholar
Quantitative Transcriptome Analysis of Purified Equine Mast Cells Identifies a Dominant Mucosal Mast Cell Population with Possible Inflammatory Functions in Airways of Asthmatic Horses
Srinivas Akula, M. Riihimäki, I. Waern, M. Åbrink +3 more
2022International Journal of Molecular Sciences6 citations Open access
Semantic Scholar
A multiomic characterization of the leukemia cell line REH using short- and long-read sequencing
Mariya Lysenkova Wiklander, Gustav Arvidsson, I. Bunikis, Anders Lundmark +7 more
2024Life Science Alliance4 citations Open access
Semantic Scholar
Environmentally-induced DNA methylation is inherited across generations in an aquatic keystone species (Daphnia magna)
Nathalie Feiner, Reinder Radersma, L. Vasquez, M. Ringnér +5 more
2021bioRxiv4 citations Open access
Semantic Scholar
Genomic, transcriptomic and epigenomic sequencing data of the B-cell leukemia cell line REH
Mariya Lysenkova Wiklander, Elin Övernäs, Johanna Lagensjö, A. Raine +17 more
2023BMC Research Notes3 citations Open access
Semantic Scholar
Computational and Statistical Analysis of Array-Based DNA Methylation Data.
J. Nordlund, Christofer L. Bäcklin, A. Raine
2018Methods in molecular biology3 citations
Semantic Scholar
Exploring a pico-well based scRNA-seq method (HIVE) for simplified processing of equine bronchoalveolar lavage cells
K. Fegraeus, M. Riihimäki, J. Nordlund, Srinivas Akula +2 more
2024bioRxiv2 citations Open access
Semantic Scholar
The SEQC 2 Epigenomics Quality Control ( EpiQC ) Study : Comprehensive 1 Characterization of Epigenetic Methods , Reproducibility , and 2 Quantification
J. Foox, J. Nordlund, C. Lalancette, Ting Gong +60 more
20202 citations
Semantic Scholar
The Heterogeneous Fusion Gene Landscape in Pediatric Acute Lymphoblastic Leukemia
Yanara Marincevic-Zuniga, J. Dahlberg, S. Nilsson, A. Raine +7 more
20162 citations
Semantic Scholar
A complete digital karyotype of the B-cell leukemia REH cell line resolved by long-read sequencing
M. L. Wiklander, G. Arvidsson, I. Bunikis, Anders Lundmark +7 more
2023bioRxiv1 citations Open access
Semantic Scholar
Single cell transcriptomics delineates the immune-cell landscape in equine lower airways and reveals upregulation of the FKBP5 gene in horses with asthma
M. Riihimäki, K. Fegraeus, J. Nordlund, I. Waern +4 more
2022bioRxiv1 citations Open access
Semantic Scholar
Author Correction: The SEQC2 epigenomics quality control (EpiQC) study
J. Foox, J. Nordlund, C. Lalancette, Ting Gong +53 more
2021Genome Biology1 citations Open access
Semantic Scholar
upSPLAT: Early-Barcoded Library Preparation for Cost-Effective Population-Scale Genomics
A. Raine, R. J. Daniels, Jonas Kjellin, Ann-Christin Wiman +7 more
2026bioRxiv0 citations Open access
Semantic Scholar
A single-cell RNA-seq dataset characterizing cellular diversity in healthy equine skin
Srinivas Akula, Bi-Rong Zhang, M. Riihimäki, S. Wernersson +1 more
2026Scientific Data0 citations Open access
Semantic Scholar
Circulating Cell‐Free RNA Reflects Immune‐Associated and Airway Remodeling Signatures in Equine Asthma
Bi-Rong Zhang, Hanna Agdour, M. Riihimäki, Sanni Hansen +1 more
2026Journal of Immunological Research0 citations Open access
Semantic Scholar
Mapping the Spatial Proteome of Leukemia Cells Undergoing Fludarabine Treatment
M. Globisch, Henrik Gezelius, A. P. Enblad, Anders Lundmark +7 more
2024bioRxiv0 citations Open access
Semantic Scholar
Mapping the Spatial Proteome of Individual Leukemia Cells Undergoing Fludarabine Treatment
J. Nordlund, M. Globisch, Henrik Gezelius, A. P. Enblad +6 more
2024Blood0 citations
Semantic Scholar
PB1709: A COMPLETE DIGITAL KARYOTYPE OF THE B-CELL LEUKEMIA REH CELL LINE RESOLVED BY LONG-READ SEQUENCING
M. L. Wiklander, G. Arvidsson, I. Bunikis, Anders Lundmark +7 more
2023HemaSphere0 citations Open access
Semantic Scholar
An equine Endothelin 3 cis-regulatory variant links blood pressure modulation to elite racing performance
K. Fegraeus, M. Rosengren, Rakan Naboulsi, L. Orlando +10 more
2022bioRxiv0 citations Open access
Semantic Scholar
Identification of somatic single nucleotide variants inleukemia by targeted sequencing of non-indexed overlapping pools
C. Lindqvist, J. Dahlberg, A. Raine, Elin Övernäs +8 more
20180 citations
Semantic Scholar
Histological characterization of orphan transporter MCT14 (SLC16A14) shows abundant expression in mouse CNS and kidney
Sahar Roshanbin, Frida A Lindberg, Emilia Lekholm, Mikaela M. Eriksson +4 more
2016BMC Neuroscience0 citations Open access
Semantic Scholar

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