Ananth Prakash

Most-cited papers

1. The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences

   Yasset Pérez-Riverol, Jingwen Bai, Chakradhar Bandla, D. García-Seisdedos +10 more

   2021Nucleic Acids Res.5,277 citations Open access

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2. The PRIDE database at 20 years: 2025 update

   Yasset Pérez-Riverol, Chakradhar Bandla, D. J. Kundu, Selvakumar Kamatchinathan +7 more

   2024Nucleic Acids Research1,843 citations Open access

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3. The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest.

   Jakob Trendel, T. Schwarzl, R. Horos, Ananth Prakash +3 more

   2019Cell370 citations Open access

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4. The HMMER Web Server for Protein Sequence Similarity Search

   Ananth Prakash, M. Jeffryes, A. Bateman, Robert D. Finn

   2017Current Protocols in Bioinformatics184 citations

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5. Expression Atlas update: gene and protein expression in multiple species

   P. Moreno, Silvie Fexova, Nancy George, J. Manning +30 more

   2021Nucleic Acids Res.83 citations Open access

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6. Eros is a novel transmembrane protein that controls the phagocyte respiratory burst and is essential for innate immunity

   David C. Thomas, S. Clare, J. Sowerby, M. Pardo +23 more

   2017Journal of Experimental Medicine63 citations Open access

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7. Expression Atlas update: insights from sequencing data at both bulk and single cell level

   Nancy George, Silvie Fexova, Alfonso Muñoz-Pomer Fuentes, Pedro Madrigal +27 more

   2023Nucleic Acids Research47 citations Open access

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8. Method for Independent Estimation of the False Localization Rate for Phosphoproteomics

   Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, O. Camacho +4 more

   2022Journal of Proteome Research29 citations Open access

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9. Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas

   Mathias Walzer, D. García-Seisdedos, Ananth Prakash, P. Brack +8 more

   2021Scientific Data29 citations Open access

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10. Domain atrophy creates rare cases of functional partial protein domains

    Ananth Prakash, A. Bateman

    2015Genome Biology23 citations Open access

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11. The yeast noncoding RNA interaction network

    S. Panni, Ananth Prakash, A. Bateman, S. Orchard

    2017RNA: A publication of the RNA Society22 citations Open access

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12. REDIportal: toward an integrated view of the A-to-I editing

    Pietro D'Addabbo, Roni Cohen-Fultheim, Itamar Twersky, Adriano Fonzino +14 more

    2024Nucleic Acids Research21 citations Open access

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13. Integrated View of Baseline Protein Expression in Human Tissues

    Ananth Prakash, D. García-Seisdedos, Shengbo Wang, D. J. Kundu +6 more

    2022Journal of Proteome Research18 citations Open access

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14. Expression Atlas in 2026: enabling FAIR and open expression data through community collaboration and integration

    Pedro Madrigal, Anil S. Thanki, Silvie Fexova, Iris D Yu +44 more

    2025Nucleic Acids Research17 citations Open access

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15. Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues

    Shengbo Wang, D. García-Seisdedos, Ananth Prakash, D. J. Kundu +7 more

    2021bioRxiv16 citations Open access

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16. Integrated meta-analysis of colorectal cancer public proteomic datasets for biomarker discovery and validation

    Javier Robles, Ananth Prakash, J. Vizcaíno, J. I. Casal

    2024PLoS Comput. Biol.15 citations Open access

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17. Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome

    Kerry A Ramsbottom, Ananth Prakash, Yasset Pérez-Riverol, O. Camacho +10 more

    2024Journal of Proteome Research14 citations Open access

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18. Protein Domain of Unknown Function 3233 is a Translocation Domain of Autotransporter Secretory Mechanism in Gamma proteobacteria

    Ananth Prakash, S. Yogeeshwari, S. Sircar, Shipra Agrawal

    2011PLoS ONE13 citations Open access

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19. The Human RNA-Binding Proteome and Its Dynamics During Arsenite-Induced Translational Arrest

    Jakob Trendel, T. Schwarzl, Ananth Prakash, A. Bateman +2 more

    2018bioRxiv9 citations Open access

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20. Unlocking the Next Decade of Proteomics with Standardized, Structured Metadata

    T. Van Den Bossche, Ananth Prakash, Tine Claeys, J. Vizcaíno +1 more

    2026Journal of Proteome Research6 citations

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21. Integrated Proteomics Analysis of Baseline Protein Expression in Pig Tissues

    Shengbo Wang, Andrew Collins, Ananth Prakash, Silvie Fexova +3 more

    2024bioRxiv6 citations Open access

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22. Phosphorylation in the Plasmodium falciparum Proteome: A Meta-Analysis of Publicly Available Data Sets

    O. Camacho, Kerry A Ramsbottom, Ananth Prakash, Zhi Sun +7 more

    2024Journal of Proteome Research5 citations Open access

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23. Integrated View of Baseline Protein Expression in Human Tissues Using Public Data Independent Acquisition Data Sets

    Ananth Prakash, Andrew Collins, Liora Vilmovsky, Silvie Fexova +2 more

    2024bioRxiv4 citations Open access

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24. Phosphorylation in the Plasmodium falciparum proteome: A meta-analysis of publicly available data sets

    O. Camacho, Kerry A Ramsbottom, Ananth Prakash, Zhi Sun +7 more

    2023bioRxiv4 citations Open access

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25. Human SRD5A1 as a case of gene expression indel-resistance in triple-coding region

    Martina M. Yordanova, Jack A. S. Tierney, Kyle A. Meiklejohn, Conor Slattery +11 more

    2026Genome Biology0 citations Open access

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26. A meta-analysis of rice phosphoproteomics data to understand variation in cell signalling across the rice pan-genome

    Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, O. Camacho +10 more

    2023bioRxiv0 citations Open access

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27. Title : Eros is a novel transmembrane protein that controls the phagocyte respiratory burst and is essential for innate immunity Running Title : Eros-a novel protein essential for innate immunity

    David C. Thomas, S. Clare, J. Sowerby, M. Pardo +27 more

    20170 citations

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28. Role of Eros, a novel transmembrane protein, in regulation of host defence

    David C. Thomas, S. Clare, J. Sowerby, M. Pardo +22 more

    20160 citations Open access

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