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V. Kochat · SciRah

Researcher profile · Semantic Scholar

V. Kochat

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V. Kochat — researcher profile on SciRah

h-index: 10
Works: 51
Citations: 632

Most-cited papers

Mutations in the SWI/SNF complex induce a targetable dependence on oxidative phosphorylation in lung cancer
Yonathan Lissanu Deribe, Yu-Ting Sun, Christopher J. Terranova, Fatima Khan +24 more
2018Nature Medicine240 citations Open access
Semantic Scholar
Cancer-induced nerve injury promotes resistance to anti-PD-1 therapy
Erez N. Baruch, F. Gleber-Netto, P. Nagarajan, Xiayu Rao +57 more
2025Nature113 citations Open access
Semantic Scholar
Aggressive serous epithelial ovarian cancer is potentially propagated by EpCAM+CD45+ phenotype
Md Zahid Akhter, S. Sharawat, Vikash Kumar, V. Kochat +6 more
2018Oncogene69 citations
Semantic Scholar
Spatial and single-cell profiling of human and murine lung adenocarcinoma precursors reveals TIM-3 as a putative target for precancer interception
Bo Zhu, Pingjun Chen, M. Aminu, Jianrong Li +48 more
2025Cancer Cell34 citations Open access
Semantic Scholar
Enhancer reprogramming in PRC2-deficient malignant peripheral nerve sheath tumors induces a targetable de-differentiated state
V. Kochat, Ayush T. Raman, Sharon M. Landers, M. Tang +29 more
2021Acta Neuropathologica29 citations
Semantic Scholar
An iron-rich subset of macrophages promotes tumor growth through a Bach1-Ednrb axis
Ian W. Folkert, William A. Molina Arocho, T. To, S. Devalaraja +27 more
2024Journal of Experimental Medicine28 citations Open access
Semantic Scholar
Conformational analysis and design of cross‐strand disulfides in antiparallel β‐sheets
S. Indu, V. Kochat, S. Thakurela, C. Ramakrishnan +1 more
2011Proteins: Structure, Function, and Bioinformatics25 citations
Semantic Scholar
Bone marrow stem cell therapy partially ameliorates pathological consequences in livers of mice expressing mutant human α1‐antitrypsin
P. Baligar, V. Kochat, S. Arindkar, Zaffar Equbal +6 more
2017Hepatology20 citations Open access
Semantic Scholar
Molecular and Cellular Functions Distinguish Superior Therapeutic Efficiency of Bone Marrow CD45 Cells Over Mesenchymal Stem Cells in Liver Cirrhosis
P. Baligar, Snehasish Mukherjee, V. Kochat, A. Rastogi +1 more
2016Stem Cells20 citations Open access
Semantic Scholar
Author Correction: Mutations in the SWI/SNF complex induce a targetable dependence on oxidative phosphorylation in lung cancer
Yonathan Lissanu Deribe, Yu-Ting Sun, Christopher J. Terranova, Fatima Khan +24 more
2018Nature Medicine19 citations
Semantic Scholar
JMJD3 aids in reprogramming of bone marrow progenitor cells to hepatic phenotype through epigenetic activation of hepatic transcription factors
V. Kochat, Zaffar Equbal, P. Baligar, Vikash Kumar +2 more
2017PLoS ONE10 citations Open access
Semantic Scholar
High enhancer activity is an epigenetic feature of HPV negative atypical head and neck squamous cell carcinoma
S. Callahan, V. Kochat, Zhiyi Liu, Ayush T. Raman +11 more
2021bioRxiv6 citations Open access
Semantic Scholar
Donor antigen-primed regulatory T cells permit liver regeneration and phenotype correction in hemophilia A mouse by allogeneic bone marrow stem cells
V. Kochat, Sumod Kanjirakkuzhiyil, P. Baligar, P. Nagarajan +1 more
2015Stem cell research & therapeutics6 citations Open access
Semantic Scholar
Bone marrow stem-cell therapy for genetic and chronic liver diseases
V. Kochat, P. Baligar, R. Maiwall, A. Mukhopadhyay
2014Hepatology International5 citations
Semantic Scholar
hSNMF: Hybrid Spatially Regularized NMF for Image-Derived Spatial Transcriptomics
Md Ishtyaq Mahmud, V. Kochat, Suresh Satpati, J. Dwarampudi +3 more
2026IEEE International Symposium on Biomedical Imaging3 citations
Semantic Scholar
Reprogramming of Cellular Plasticity via ETS and MYC Core-regulatory Circuits During Response to MAPK Inhibition in BRAF-mutant Colorectal Cancer
H. Lee, Zhao Zheng, Alexey Sorokin, Chi-Wut Wong +21 more
2025bioRxiv3 citations
Semantic Scholar
Spatially-resolved single cell atlas of liposarcoma reveals lineage hierarchies, immune niches, and regulatory circuits
R. Denu, V. Kochat, Zhao Zheng, Suresh Satpati +27 more
2026bioRxiv1 citations Open access
Semantic Scholar
Cellular stemness identifies high-risk ductal carcinoma in situ and offers a therapeutic interception opportunity
E. Schueddig, V. Kochat, E. Arslan, Y. Dallas +32 more
2026bioRxiv1 citations Open access
Semantic Scholar
Differentiation in the human urothelia is defined by distinct alternative polyadenylation
Ninh B. Le, Surbhi Sona, Briana Santo, Yi Zhang +10 more
2026Cell Reports1 citations
Semantic Scholar
Spatial biology reveals altered macrophage states in immunosuppressed non-melanoma skin cancer
Shorook Naara, V. Kochat, Xiayu Rao, E. Arslan +29 more
2026Cell1 citations Open access
Semantic Scholar
Intratumoral Sotigalimab with Pembrolizumab Induces Rapid Activation of Antigen-Presenting Cells and Drives Antitumor Responses in Non-injected Tumors in Metastatic Melanoma: A Phase I/II Study
S. Bentebibel, Daniel Mcgrail, V. Kochat, E. Arslan +33 more
2026Cancer Discovery1 citations Open access
Semantic Scholar
Spatially Anchored Regulatory State Inference in Melanoma
J. Dwarampudi, V. Kochat, Suresh Satpati, Md Ishtyaq Mahmud +8 more
2026bioRxiv1 citations Open access
Semantic Scholar
Alternative polyadenylation regulates human urothelial cell differentiation
Ninh B. Le, Surbhi Sona, Briana Santo, R. A. Schweickart +8 more
2025bioRxiv1 citations Open access
Semantic Scholar
Benchmarking Dimensionality Reduction Techniques for Spatial Transcriptomics
Md Ishtyaq Mahmud, V. Kochat, Suresh Satpati, J. Dwarampudi +2 more
2025ACM International Conference on Bioinformatics, Computational Biology and Biomedicine1 citations Open access
Semantic Scholar
Abstract 130: Multi-omic analysis of desmoplastic small sound cell tumors reveal distinct epithelial and neuroendocrine lineages
Danh D. Truong, E. Arslan, V. Kochat, Sandhya Krishnan +16 more
2024Cancer Research1 citations
Semantic Scholar
New cellular models of undifferentiated pleomorphic sarcoma and malignant peripheral nerve sheath tumor
Angela D. Bhalla, Sharon M. Landers, A. Singh, Michelle Yeagley +24 more
2021bioRxiv1 citations Open access
Semantic Scholar
Ambiguity-Aware Multi-Stage Cell-Type Annotation for Spatial Transcriptomics
Md Ishtyaq Mahmud, V. Kochat, Humaira Anzum, Suresh Satpati +3 more
2026bioRxiv0 citations Open access
Semantic Scholar
NanoCellAnnotator: Formalizing Expert Cell Type Annotation with Large Language Models
Md Ishtyaq Mahmud, V. Kochat, Humaira Anzum, Suresh Satpati +3 more
2026bioRxiv0 citations Open access
Semantic Scholar
LATTICE: Graph Self-Supervised Learning for Multimodal Spatial Omics Integration
J. Dwarampudi, V. Kochat, Suresh Satpati, Hien Van Nguyen +2 more
2026arXiv.org0 citations
Semantic Scholar
Chromatin Landscape of Cancer Cell Lines Identifies Enhancer Subtypes
M. Mattohti, E. Arslan, Ayush T. Raman, Christopher J. Terranova +18 more
2026bioRxiv0 citations Open access
Semantic Scholar
Abstract PS1-13-10: Elucidating Stemness-Associated Regulatory Pathways to Guide Personalized Treatment for Ductal Carcinoma in Situ
F. Behbod, E. Schueddig, V. Kochat, E. Arslan +23 more
2026Clinical Cancer Research0 citations
Semantic Scholar
Abstract CT238: Intratumoral sotigalimab with pembrolizumab induces rapid activation of antigen presenting cells and drives anti-tumor responses in non-injected tumors in metastatic melanoma: A phase I/II study
S. Bentebibel, D. McGrail, V. Kochat, E. Arslan +13 more
2026Cancer Research0 citations
Semantic Scholar
A Counterfactual Framework for Directional Cell–Cell Interaction Analysis in Spatial Transcriptomics
Humaira Anzum, V. Kochat, Suresh Satpati, Md Ishtyaq Mahmud +6 more
2026bioRxiv0 citations Open access
Semantic Scholar
highSpaClone enables copy number alteration inference and tumor subclone analysis for high-resolution spatial transcriptomics.
Chen-Xuan Zang, E. Schueddig, Charles C. Guo, R. Madan +7 more
2026Cell Reports Methods0 citations Open access
Semantic Scholar
Spatially-Resolved Multiomic Atlas of Leiomyosarcoma Identifies Two Clinically Relevant Epigenetically-Driven Cell States
R. Denu, Zhao Zheng, Yingda Jiang, Suresh Satpati +21 more
2026bioRxiv0 citations Open access
Semantic Scholar
Reprogramming of Cellular Plasticity via ETS and MYC Core-regulatory Circuits During Response to MAPK Inhibition in BRAF-mutant Colorectal Cancer.
H. Lee, Zhao Zheng, Alexey Sorokin, Chi-Wut Wong +21 more
2026Clinical Cancer Research0 citations Open access
Semantic Scholar
Abstract 3446: Loxl2 drives neutrophil-mediated immune evasion and resistance to anti PD-1 therapy in murine melanoma
Jiah Yang, E. Arslan, V. Kochat, Suresh Satpati +1 more
2026Cancer Research0 citations
Semantic Scholar
Abstract 3489: EWSR1::WT1 fusion oncoprotein and the androgen receptor shape the biology of desmoplastic small round cell tumors
Danh D. Truong, E. Arslan, V. Kochat, Jia-Qian Fan +13 more
2026Cancer Research0 citations
Semantic Scholar
Spatial transcriptomic profiling from over 300 leiomyosarcoma samples.
R. Denu, Zhao Zheng, V. Kochat, Yingda Jiang +10 more
2025Journal of Clinical Oncology0 citations Open access
Semantic Scholar
ATRX Loss Predicts Poor Outcomes and Reveals a Therapeutic Vulnerability to TEAD Inhibition in Soft Tissue Sarcomas
R. Denu, Anand K. Singh, Yingda Jiang, Zhao Zheng +29 more
2025bioRxiv0 citations Open access
Semantic Scholar
Abstract 4045: Leiomyosarcoma is characterized by two distinct subtypes driven by NFI or AP1 transcription factors
R. Denu, Zhao Zheng, Yingda Jiang, V. Kochat +15 more
2025Cancer Research0 citations
Semantic Scholar
A poly(A) isoform–aware single-cell and spatial atlas defines fibroblast niches in the human bladder
Briana Santo, Emily E. Fink, Pierre-Emmanuel Desprez, Yi-Chia Lin +11 more
2025bioRxiv0 citations
Semantic Scholar
PROGNOSTIC AND BIOLOGIC SIGNIFICANCE OF ATRX MUTATION IN ADULT SOFT TISSUE SARCOMA
Anand Singh, Yingda Jiang, Zhao Zheng, D. Ingram +20 more
2025ESMO Rare Cancers0 citations Open access
Semantic Scholar
Abstract 2627: Integrated multi-omics analyses discovers lineage plasticity in desmoplastic small round cell tumors
Danh D. Truong, E. Arslan, V. Kochat, Roberto Cardenas +14 more
2025Cancer Research0 citations
Semantic Scholar
Abstract P3-11-11: Ductal Carcinoma in Situ: Molecular and Cellular Basis of Malignant Transition
F. Behbod, Emily Nissen, Yan Hong, V. Kochat +6 more
2025Clinical Cancer Research0 citations
Semantic Scholar
Abstract A070 Identifying therapeutic vulnerabilities in desmoplastic small round cell tumor through multi-omics analyses
Danh D. Truong, E. Arslan, V. Kochat, Sandhya Krishnan +17 more
2024Cancer Research0 citations
Semantic Scholar
Abstract 7547: Enhancers as targets for improvements in immunotherapy
A. Singh, V. Kochat, E. Arslan, Suresh Satpati +5 more
2024Cancer Research0 citations
Semantic Scholar
71MO Clinical and biomarker analyses of intratumoral CD40 agonist sotigalimab in combination with pembrolizumab in metastatic melanoma: A phase I/II trial
S-E. Bentebibel, D. McGrail, R. A. Wahab, V. Kochat +16 more
2024Annals of Oncology0 citations
Semantic Scholar
Donor antigen-primed regulatory T cells permit liver regeneration and phenotype correction in hemophilia A mouse by allogeneic bone marrow stem cells
V. Kochat, Sumod Kanjirakkuzhiyil, P. Baligar, P. Nagarajan +1 more
2015Stem cell research & therapeutics0 citations Open access
Semantic Scholar
PERIPHERAL TOLERANCE ALLOWS TRANSDIFFERENTIATION OF ALLOGENIC BONE MARROW CELLS INTO LIVER PARENCHYMA/MESENCHYMA CELLS FOR PHENOTYPE CORRECTION OF HEMOPHILIA A MOUSE
V. Kochat, Sumod Kanjirakkuzhiyil, P. Baligar, N. Yadav +2 more
20130 citations
Semantic Scholar

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