Anna Philips

Most-cited papers

1. RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.

   J. A. Cruz, Marc-Frédérick Blanchet, Michal J. Boniecki, J. M. Bujnicki +29 more

   2012RNA: A publication of the RNA Society155 citations Open access

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2. LigandRNA: computational predictor of RNA–ligand interactions

   Anna Philips, Kaja Milanowska, Grzegorz Łach, J. Bujnicki

   2013RNA: A publication of the RNA Society91 citations Open access

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3. Metagenomic analysis of β-lactamase and carbapenemase genes in the wastewater resistome.

   N. Makowska, Anna Philips, M. Dabert, Katarzyna Nowis +3 more

   2019Water Research69 citations

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4. The standardisation of the approach to metagenomic human gut analysis: from sample collection to microbiome profiling

   Natalia M. Szostak, Agata Szymanek, Jan Havránek, Katarzyna Tomela +8 more

   2022Scientific Reports53 citations Open access

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5. Host Factors Associated with Gut Mycobiome Structure

   Natalia M. Szostak, L. Handschuh, A. Samelak-Czajka, Katarzyna Tomela +5 more

   2023mSystems42 citations Open access

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6. Global Increase in Circular RNA Levels in Myotonic Dystrophy

   Karol Czubak, Katarzyna Taylor, Agnieszka Piasecka, K. Sobczak +6 more

   2019Frontiers in Genetics33 citations Open access

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7. Comprehensive analysis of microorganisms accompanying human archaeological remains

   Anna Philips, I. Stolarek, B. Kuczkowska, A. Juras +4 more

   2017GigaScience29 citations Open access

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8. Urban wastewater as a conduit for pathogenic Gram-positive bacteria and genes encoding resistance to β-lactams and glycopeptides.

   N. Makowska, Katarzyna Bresa, R. Koczura, Anna Philips +2 more

   2020Science of the Total Environment27 citations

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9. The emerging role of the gut mycobiome in liver diseases

   Natalia M. Szostak, M. Figlerowicz, Anna Philips

   2023Gut microbes21 citations Open access

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10. Small RNA fragments derived from multiple RNA classes – the missing element of multi-omics characteristics of the hepatitis C virus cell culture model

    Paulina Jackowiak, Anna Hojka-Osińska, Anna Philips, A. Zmienko +4 more

    2017BMC Genomics19 citations Open access

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11. Analysis of oral microbiome from fossil human remains revealed the significant differences in virulence factors of modern and ancient Tannerella forsythia

    Anna Philips, I. Stolarek, L. Handschuh, Katarzyna Nowis +6 more

    2020BMC Genomics18 citations Open access

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12. Expression Landscape of circRNAs in Arabidopsis thaliana Seedlings and Adult Tissues

    Anna Philips, Katarzyna Nowis, Michał Stelmaszczuk, Paulina Jackowiak +3 more

    2020Frontiers in Plant Science17 citations Open access

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13. Computational methods for prediction of RNA interactions with metal ions and small organic ligands.

    Anna Philips, Grzegorz Łach, J. Bujnicki

    2015Methods in Enzymology14 citations

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14. HarmonyDOCK: The Structural Analysis of Poses in Protein-Ligand Docking

    Dariusz M Plewczynski, Anna Philips, M. V. Grotthuss, L. Rychlewski +1 more

    2014J. Comput. Biol.14 citations

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15. Profile of Basal Cell Carcinoma Mutations and Copy Number Alterations - Focus on Gene-Associated Noncoding Variants

    P. Nawrocka, P. Galka-Marciniak, M. Urbanek-Trzeciak, Ilamathi M-Thirusenthilarasan +5 more

    2021bioRxiv12 citations Open access

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16. A mosaic genetic structure of the human population living in the South Baltic region during the Iron Age

    I. Stolarek, A. Juras, L. Handschuh, M. Marcinkowska-Swojak +7 more

    2018Scientific Reports12 citations Open access

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17. Arabidopsis thaliana cbp80, c2h2, and flk Knockout Mutants Accumulate Increased Amounts of Circular RNAs

    Anna Philips, Katarzyna Nowis, Michał Stelmaszczuk, J. Podkowiński +3 more

    2020Cells11 citations Open access

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18. At-C-RNA database, a one-stop source for information on circRNAs in Arabidopsis thaliana in a unified format

    Katarzyna Nowis, Paulina Jackowiak, M. Figlerowicz, Anna Philips

    2021Database J. Biol. Databases Curation1 citations Open access

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19. The standardisation of the approach to metagenomic human gut analysis: from sample collection to microbiome profiling

    Natalia M. Szostak, Agata Szymanek, Jan Havránek, Katarzyna Tomela +8 more

    2022Scientific Reports0 citations Open access

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20. A08 Early transcriptional changes in human HD-IPS cell lines revealed by RNASEQ

    M. Figiel, Karolina Świtońska, Wojciech J. Szlachcic, Anna Philips +4 more

    2018Pathogenic mechanisms0 citations

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21. O 1 . 3 Investigating the pangenome of the plant pathogenic Pectobacterium parmentieri provides insight into its outstanding adaptation abilities

    MałgorzataMarszałek, Zenczak, Pawel Wojciechowski, Anna +9 more

    20180 citations

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22. Small RNA fragments derived from multiple RNA classes – the missing element of multi-omics characteristics of the hepatitis C virus cell culture model

    Paulina Jackowiak, Anna Hojka-Osińska, Anna Philips, A. Zmienko +4 more

    2017BMC Genomics0 citations Open access

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23. structure prediction : A CASP-like evaluation of RNA three-dimensional RNA-Puzzles

    J. A. Cruz, Marc-Frédérick Blanchet, Michal J. Boniecki, J. Bujnicki +27 more

    20120 citations

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