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A. Duggan · SciRah

Researcher profile · Semantic Scholar

A. Duggan

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A. Duggan — researcher profile on SciRah

h-index: 21
Works: 55
Citations: 1,830

Most-cited papers

Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA
Gabriel Renaud, V. Slon, A. Duggan, J. Kelso
2015Genome Biology478 citations Open access
Semantic Scholar
17th Century Variola Virus Reveals the Recent History of Smallpox
A. Duggan, M. Perdomo, D. Piombino-Mascali, Stephanie Marciniak +17 more
2016Current Biology215 citations Open access
Semantic Scholar
SARS-CoV-2 infection and transmission in the North American deer mouse
B. Griffin, M. Chan, N. Tailor, E. Mendoza +24 more
2021Nature Communications110 citations Open access
Semantic Scholar
Plasmodium falciparum malaria in 1st-2nd century CE southern Italy.
Stephanie Marciniak, T. Prowse, D. Herring, J. Klunk +5 more
2016Current Biology100 citations Open access
Semantic Scholar
The paradox of HBV evolution as revealed from a 16th century mummy
Zoe Patterson Ross, J. Klunk, G. Fornaciari, V. Giuffra +7 more
2018PLoS Pathogens88 citations Open access
Semantic Scholar
Maternal history of Oceania from complete mtDNA genomes: contrasting ancient diversity with recent homogenization due to the Austronesian expansion.
A. Duggan, Beth E. I. Evans, F. Friedlaender, Jonathan Scott Friedlaender +4 more
2014American Journal of Human Genetics79 citations Open access
Semantic Scholar
Optimizing extraction and targeted capture of ancient environmental DNA for reconstructing past environments using the PalaeoChip Arctic-1.0 bait-set
T. J. Murchie, M. Kuch, A. Duggan, Marissa L. Ledger +8 more
2020Quaternary Research77 citations Open access
Semantic Scholar
Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil
Anna-Sapfo Malaspinas, O. Lao, H. Schroeder, M. Rasmussen +41 more
2014Current Biology66 citations Open access
Semantic Scholar
Investigating the Prehistory of Tungusic Peoples of Siberia and the Amur-Ussuri Region with Complete mtDNA Genome Sequences and Y-chromosomal Markers
A. Duggan, M. Whitten, V. Wiebe, M. Crawford +6 more
2013PLoS ONE55 citations Open access
Semantic Scholar
Coordination of cytochrome c oxidase gene expression in the remodelling of skeletal muscle
A. Duggan, K. Kocha, C. Monk, K. Bremer +1 more
2011Journal of Experimental Biology50 citations
Semantic Scholar
The Gateway from Near into Remote Oceania: New Insights from Genome-Wide Data
I. Pugach, A. Duggan, D. Merriwether, F. Friedlaender +2 more
2018Molecular biology and evolution46 citations Open access
Semantic Scholar
Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil
Anna-Sapfo Malaspinas, O. Lao, H. Schroeder, Morten Rasmussen +36 more
2014Current Biology35 citations Open access
Semantic Scholar
A molecular portrait of maternal sepsis from Byzantine Troy
Alison M. Devault, T. D. Mortimer, A. Kitchen, H. Kiesewetter +17 more
2017eLife34 citations Open access
Semantic Scholar
Phylogeographic genomics of mitochondrial DNA: Highly-resolved patterns of intraspecific evolution and a multi-species, microarray-based DNA sequencing strategy for biodiversity studies.
S. Carr, H. Marshall, A. Duggan, Sarah M. C. Flynn +3 more
2008Comparative Biochemistry and Physiology - Part D:Genomics and Proteomics28 citations
Semantic Scholar
A highly unstable recent mutation in human mtDNA.
A. Duggan, M. Stoneking
2013American Journal of Human Genetics27 citations Open access
Semantic Scholar
Monkeypox in Montréal: Epidemiology, Phylogenomics, and Public Health Response to a Large North American Outbreak
L. Harrison, Geneviève Bergeron, G. Cadieux, H. Charest +22 more
2022Annals of Internal Medicine26 citations
Semantic Scholar
The origins and genomic diversity of American Civil War Era smallpox vaccine strains
A. Duggan, J. Klunk, Ashleigh F. Porter, A. Dhody +18 more
2020Genome Biology25 citations Open access
Semantic Scholar
Pleistocene mitogenomes reconstructed from the environmental DNA of permafrost sediments.
T. J. Murchie, Emil Karpinski, Katherine M. Eaton, A. Duggan +5 more
2022Current Biology23 citations Open access
Semantic Scholar
Ancient Roman mitochondrial genomes and isotopes reveal relationships and geographic origins at the local and pan-Mediterranean scales
M. Emery, A. Duggan, T. J. Murchie, R. J. Stark +7 more
2018Journal of Archaeological Science: Reports23 citations
Semantic Scholar
Recent developments in the genetic history of East Asia and Oceania.
A. Duggan, M. Stoneking
2014Current Opinion in Genetics and Development23 citations
Semantic Scholar
Genetic resiliency and the Black Death: No apparent loss of mitogenomic diversity due to the Black Death in medieval London and Denmark.
J. Klunk, A. Duggan, R. Redfern, J. Gamble +9 more
2019American Journal of Physical Anthropology22 citations Open access
Semantic Scholar
American mastodon mitochondrial genomes suggest multiple dispersal events in response to Pleistocene climate oscillations
Emil Karpinski, Dirk Hackenberger, G. Zazula, C. Widga +15 more
2020Nature Communications21 citations Open access
Semantic Scholar
Genetic Discontinuity between the Maritime Archaic and Beothuk Populations in Newfoundland, Canada.
A. Duggan, Alison J. T. Harris, Stephanie Marciniak, I. Marshall +10 more
2017Current Biology21 citations Open access
Semantic Scholar
Comment: Characterization of Two Historic Smallpox Specimens from a Czech Museum
Ashleigh F. Porter, A. Duggan, H. Poinar, E. Holmes
2017Viruses18 citations Open access
Semantic Scholar
Quantitative Phylogenomics of Within-Species Mitogenome Variation: Monte Carlo and Non-Parametric Analysis of Phylogeographic Structure among Discrete Transatlantic Breeding Areas of Harp Seals (Pagophilus groenlandicus)
S. Carr, A. Duggan, G. Stenson, H. Marshall
2015PLoS ONE18 citations Open access
Semantic Scholar
Successful reconstruction of whole mitochondrial genomes from ancient Central America and Mexico
Ana Y. Morales-Arce, Courtney A. Hofman, A. Duggan, Adam K. Benfer +3 more
2017Scientific Reports16 citations Open access
Semantic Scholar
A 14th century CE Brucella melitensis genome and the recent expansion of the Western Mediterranean clade
George S. Long, Jessica Hider, A. Duggan, J. Klunk +10 more
2023PLoS Pathogens15 citations Open access
Semantic Scholar
Electronic supplementary material from Resolving the phylogenetic position of Darwin's extinct ground sloth (Mylodon darwinii) using mitogenomic and nuclear exon data
F. Delsuc, M. Kuch, G. Gibb, J. Hughes +5 more
201814 citations
Semantic Scholar
Ancient Clostridium DNA and variants of tetanus neurotoxins associated with human archaeological remains
Harold P. Hodgins, Peng-Sheng Chen, B. Lobb, Xin Wei +10 more
2023bioRxiv12 citations Open access
Semantic Scholar
Resolving the phylogenetic position of Darwin's extinct ground sloth (Mylodon darwinii) using mitogenomic and nuclear exon data
F. Delsuc, M. Kuch, G. Gibb, J. Hughes +5 more
2018Proceedings of the Royal Society of London. Biological Sciences11 citations Open access
Semantic Scholar
Smallpox's antiquity in doubt
T. Newfield, A. Duggan, H. Poinar
2022Journal of Roman Archaeology10 citations Open access
Semantic Scholar
Correction: The paradox of HBV evolution as revealed from a 16th century mummy
Zoe Patterson Ross, J. Klunk, G. Fornaciari, V. Giuffra +7 more
2018PLoS Pathogens10 citations Open access
Semantic Scholar
Genomic data suggest parallel dental vestigialization within the xenarthran radiation
C. Emerling, G. Gibb, Marie-Ka Tilak, J. Hughes +5 more
2023bioRxiv8 citations Open access
Semantic Scholar
Dorset Pre-Inuit and Beothuk foodways in Newfoundland, ca. AD 500-1829
Alison J. T. Harris, A. Duggan, Stephanie Marciniak, I. Marshall +4 more
2019PLoS ONE7 citations Open access
Semantic Scholar
The gateway into Remote Oceania: new insights from genome-wide data
I. Pugach, A. Duggan, D. Merriwether, F. Friedlaender +2 more
2017bioRxiv6 citations Open access
Semantic Scholar
A 16th century Escherichia coli draft genome associated with an opportunistic bile infection
George S. Long, J. Klunk, A. Duggan, Madeline Tapson +9 more
2022Communications Biology5 citations Open access
Semantic Scholar
Examining pathogen DNA recovery across the remains of a 14th century Italian friar (Blessed Sante) infected with Brucella melitensis.
Jessica Hider, A. Duggan, J. Klunk, Katherine M. Eaton +9 more
2022International Journal of Paleopathology5 citations
Semantic Scholar
PalaeoChip Arctic1.0: An optimised eDNA targeted enrichment approach to reconstructing past environments
T. J. Murchie, M. Kuch, A. Duggan, Marissa L. Ledger +8 more
2019bioRxiv5 citations Open access
Semantic Scholar
Response to Brinkmann et al. “Re-assembly of 19th century smallpox vaccine genomes reveals the contemporaneous use of horsepox and horsepox-related viruses in the United States”
A. Duggan, E. Holmes, H. Poinar
2020Genome Biology3 citations Open access
Semantic Scholar
The First Hand-Rearing of Larger Hairy Armadillos (Chaetophractus villosus) at the Temaikèn Foundation
María Julieta Olocco Diz, A. Duggan
20043 citations Open access
Semantic Scholar
Schmutzi : contamination estimate and endogenous mitochondrial consensus calling for ancient DNA . Additional le 1
Gabriel Renaud, V. Slon, A. Duggan, J. Kelso
20152 citations
Semantic Scholar
Genomic data suggest parallel dental 1 vestigialization within the xenarthran 2 radiation 3
C. Emerling, G. Gibb, Marie-Ka Tilak, Jonathan Hughes +5 more
20220 citations
Semantic Scholar
Australia and Oceania
A. Duggan, M. Stoneking
2021Evolution of the Human Genome II0 citations
Semantic Scholar
PalaeoChip: An eDNA targeted enrichment approach for reconstructing human palaeoecoystems
T. J. Murchie, M. Kuch, A. Duggan, Marissa L. Ledger +8 more
20200 citations
Semantic Scholar
Examining sampling strategies for archaeological dental calculus through the exploration of the regional variation of bacteria in the oral microbiome
Samantha D.R. Price, T. Prowse, J. Boldsen, M. Kuch +4 more
20200 citations
Semantic Scholar
Mitochondrial population dynamics in Black Death London
J. Klunk, A. Duggan, R. Redfern, S. DeWitte +1 more
20180 citations
Semantic Scholar
Strontium and oxygen isotope evidence for Maritime Archaic mobility patterns at the site of Port au Choix-3, Newfoundland
V. Grimes, Alison J. T. Harris, A. Duggan, Stephanie Marciniak +1 more
20170 citations
Semantic Scholar
The Benefits of Time Travel: Reconstructing Ancient Genomes and Microbiomes
A. Duggan
20170 citations
Semantic Scholar
Molecular evidence for Plasmodium falciparum malaria in 1st-4th c. A.D. southern Italy
Stephanie Marciniak, T. Prowse, A. Herring, J. Klunk +5 more
20170 citations
Semantic Scholar
Maritime Archaic Subsistence in Newfoundland, Canada: Insights from δ13C and δ15N of Bulk Bone Collagen and Amino Acids
Alison J. T. Harris, A. Duggan, Stephanie Marciniak, H. Poinar +1 more
20170 citations
Semantic Scholar

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