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F. Bocci · SciRah

Researcher profile · Semantic Scholar

F. Bocci

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F. Bocci — researcher profile on SciRah

h-index: 17
Works: 36
Citations: 1,350

Most-cited papers

Toward understanding cancer stem cell heterogeneity in the tumor microenvironment
F. Bocci, Larisa M. Gearhart-Serna, Marcelo Boareto, Mariana Ribeiro +5 more
2018Proceedings of the National Academy of Sciences of the United States of America274 citations Open access
Semantic Scholar
Decoding leader cells in collective cancer invasion
Samuel A. Vilchez Mercedes, F. Bocci, Herbert Levine, J. Onuchic +2 more
2021Nature Reviews. Cancer134 citations
Semantic Scholar
NRF2 activates a partial epithelial-mesenchymal transition and is maximally present in a hybrid epithelial/mesenchymal phenotype
F. Bocci, Satyendra C Tripathi, Samuel A. Vilchez Mercedes, Jason T. George +6 more
2018bioRxiv133 citations Open access
Semantic Scholar
Numb prevents a complete epithelial–mesenchymal transition by modulating Notch signalling
F. Bocci, M. Jolly, Satyendra C Tripathi, M. Aguilar +3 more
2017Journal of the Royal Society Interface102 citations Open access
Semantic Scholar
Understanding the Principles of Pattern Formation Driven by Notch Signaling by Integrating Experiments and Theoretical Models
F. Bocci, J. Onuchic, M. Jolly
2020Frontiers in Physiology88 citations Open access
Semantic Scholar
Quantifying Cancer Epithelial-Mesenchymal Plasticity and its Association with Stemness and Immune Response
D. Jia, Xuefei Li, F. Bocci, Shubham Tripathi +4 more
2019Journal of Clinical Medicine73 citations Open access
Semantic Scholar
Pericytes enable effective angiogenesis in the presence of proinflammatory signals
Tae-Yun Kang, F. Bocci, M. Jolly, Herbert Levine +2 more
2019Proceedings of the National Academy of Sciences of the United States of America69 citations Open access
Semantic Scholar
A mechanism-based computational model to capture the interconnections among epithelial-mesenchymal transition, cancer stem cells and Notch-Jagged signaling
F. Bocci, M. Jolly, Jason T. George, Herbert Levine +1 more
2018bioRxiv63 citations Open access
Semantic Scholar
Differential cell composition and split epidermal differentiation in human palm, sole, and hip skin
J. Wiedemann, A. Billi, F. Bocci, Ghaidaa Kashgari +14 more
2023Cell Reports56 citations Open access
Semantic Scholar
A biophysical model uncovers the size distribution of migrating cell clusters across cancer types
F. Bocci, M. Jolly, J. Onuchic
2019bioRxiv43 citations Open access
Semantic Scholar
Nrf2 Modulates the Hybrid Epithelial/Mesenchymal Phenotype and Notch Signaling During Collective Cancer Migration
Samuel A. Vilchez Mercedes, F. Bocci, Mona Ahmed, I. Eder +5 more
2021bioRxiv42 citations Open access
Semantic Scholar
spliceJAC: transition genes and state‐specific gene regulation from single‐cell transcriptome data
F. Bocci, Pei-Jie Zhou, Qing Nie
2022Molecular Systems Biology41 citations Open access
Semantic Scholar
Deciphering the Dynamics of Epithelial-Mesenchymal Transition and Cancer Stem Cells in Tumor Progression
F. Bocci, Herbert Levine, J. Onuchic, M. Jolly
2018Current Stem Cell Reports41 citations Open access
Semantic Scholar
PAGE4 and Conformational Switching: Insights from Molecular Dynamics Simulations and Implications for Prostate Cancer
Xingcheng Lin, Susmita Roy, M. Jolly, F. Bocci +11 more
2018bioRxiv36 citations Open access
Semantic Scholar
Role of metabolic spatiotemporal dynamics in regulating biofilm colony expansion
F. Bocci, Yoko Suzuki, Ming-Yang Lu, J. Onuchic
2018Proceedings of the National Academy of Sciences of the United States of America28 citations Open access
Semantic Scholar
Inference of Intercellular Communications and Multilayer Gene-Regulations of Epithelial–Mesenchymal Transition From Single-Cell Transcriptomic Data
Yu-Tong Sha, Shuxiong Wang, F. Bocci, Pei-Jie Zhou +1 more
2021Frontiers in Genetics24 citations Open access
Semantic Scholar
Structural and Dynamical Order of a Disordered Protein: Molecular Insights into Conformational Switching of PAGE4 at the Systems Level
Xingcheng Lin, Prakash Kulkarni, F. Bocci, N. Schafer +17 more
2019Biomolecules20 citations Open access
Semantic Scholar
Single-Cell RNA-Seq Analysis Reveals the Acquisition of Cancer Stem Cell Traits and Increase of Cell–Cell Signaling during EMT Progression
F. Bocci, Pei-Jie Zhou, Qing Nie
2021Cancers16 citations Open access
Semantic Scholar
Stochastic fluctuations promote ordered pattern formation of cells in the Notch-Delta signaling pathway
Madeline Galbraith, F. Bocci, J. Onuchic
2022PLoS Comput. Biol.11 citations Open access
Semantic Scholar
Investigating epithelial-mesenchymal heterogeneity of tumors and circulating tumor cells with transcriptomic analysis and biophysical modeling
F. Bocci, S. Mandal, Tanishq Tejaswi, M. Jolly
2020bioRxiv11 citations Open access
Semantic Scholar
Spatial–temporal order–disorder transition in angiogenic NOTCH signaling controls cell fate specification
Tae-Yun Kang, F. Bocci, Qing Nie, J. Onuchic +1 more
2024eLife8 citations Open access
Semantic Scholar
Towards understanding cancer stem cell heterogeneity in the tumor microenvironment
F. Bocci, Larisa M. Gearhart-Serna, Marcelo Boareto, Mariana Ribeiro +5 more
2018bioRxiv8 citations Open access
Semantic Scholar
Theoretical and computational tools to model multistable gene regulatory networks
F. Bocci, D. Jia, Qing Nie, M. Jolly +1 more
2023Reports on progress in physics. Physical Society7 citations Open access
Semantic Scholar
Coupled Feedback Loops Involving PAGE4, EMT and Notch Signaling Can Give Rise to Non-Genetic Heterogeneity in Prostate Cancer Cells
Divyoj Singh, F. Bocci, Prakash Kulkarni, M. Jolly
2020bioRxiv6 citations Open access
Semantic Scholar
Nrf2 regulates collective cancer migration by modulating the hybrid epithelial/mesenchymal phenotype
Samuel A. Vilchez Mercedes, F. Bocci, Ninghao Zhu, Herbert Levine +4 more
20215 citations
Semantic Scholar
Quantitative Characteristic of ncRNA Regulation in Gene Regulatory Networks.
F. Bocci, M. Jolly, Herbert Levine, J. Onuchic
2019Methods in molecular biology5 citations
Semantic Scholar
Theoretical and computational tools to model multistable gene regulatory networks
F. Bocci, D. Jia, Qing Nie, M. Jolly +1 more
2023arXiv.org4 citations
Semantic Scholar
Editorial: Epithelial to Mesenchymal Plasticity in Colorectal Cancer
F. Bocci, R. Schneider-Stock, Sreeparna Banerjee
2022Frontiers in Cell and Developmental Biology2 citations Open access
Semantic Scholar
Deciphering the Dynamics of Epithelial-Mesenchymal Transition and Cancer Stem Cells in Tumor Progression
F. Bocci, Herbert Levine, J. Onuchic, M. Jolly
2019Current Stem Cell Reports1 citations Open access
Semantic Scholar
794 Region-specific differences in human epidermal differentiation at a single-cell level
J. Wiedemann, A. Billi, F. Bocci, E. Xing +3 more
2023Journal of Investigative Dermatology0 citations Open access
Semantic Scholar
Spatial-temporal order-disorder transition in angiogenic NOTCH signaling controls cell fate specification
Tae-Yun Kang, F. Bocci, Qing Nie, J. Onuchic +1 more
2023bioRxiv0 citations Open access
Semantic Scholar
Phenotypic heterogeneity driven by cell-cell signaling: principles of pattern formation and implications for metastasis
F. Bocci
20190 citations
Semantic Scholar
Abstract 4999: Identifying intercellular phenotypic stability factors for a hybrid epithelial-mesenchymal phenotype
M. Jolly, F. Bocci, Satyendra C Tripathi, M. Aguilar +3 more
2018Tumor Biology0 citations
Semantic Scholar
Numb prevents a complete EMT by modulating Notch signalling
F. Bocci, M. Jolly, Satyendra C Tripathi, M. Aguilar +3 more
2017bioRxiv0 citations Open access
Semantic Scholar
The role of spatial dynamics in modulating metabolic interactions in biofilm development
F. Bocci, Ming-Yang Lu, Yoko Suzuki, J. Onuchic
20170 citations
Semantic Scholar
The role of metabolic spatiotemporal dynamics in modulating biofilm colony expansion
F. Bocci, Yoko Suzuki, Ming-Yang Lu, J. Onuchic
0 citations
Semantic Scholar

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