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A. Bonin · SciRah

Researcher profile · Semantic Scholar

A. Bonin

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A. Bonin — researcher profile on SciRah

h-index: 40
Works: 98
Citations: 11K

Most-cited papers

How to track and assess genotyping errors in population genetics studies
A. Bonin, E. Bellemain, P. Eidesen, F. Pompanon +2 more
2004Molecular Ecology1,459 citations
Semantic Scholar
Genotyping errors: causes, consequences and solutions
F. Pompanon, A. Bonin, E. Bellemain, P. Taberlet
2005Nature reviews genetics1,237 citations
Semantic Scholar
obitools: a unix‐inspired software package for DNA metabarcoding
F. Boyer, C. Mercier, A. Bonin, Y. Le Bras +2 more
2016Molecular Ecology Resources1,056 citations
Semantic Scholar
Environmental DNA: For Biodiversity Research and Monitoring
A. Bonin, P. Taberlet, L. Zinger
2018712 citations
Semantic Scholar
Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data
G. Ficetola, Johan Pansu, A. Bonin, É. Coissac +8 more
2015Molecular Ecology Resources665 citations
Semantic Scholar
Statistical analysis of amplified fragment length polymorphism data: a toolbox for molecular ecologists and evolutionists
A. Bonin, D. Ehrich, S. Manel
2007Molecular Ecology577 citations Open access
Semantic Scholar
A spatial analysis method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation
S. Joost, A. Bonin, M. Bruford, L. Després +3 more
2007Molecular Ecology476 citations Open access
Semantic Scholar
DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions
L. Zinger, A. Bonin, I. Alsos, M. Bálint +23 more
2019Molecular Ecology381 citations Open access
Semantic Scholar
A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions
R. Wallace, G. Sasson, P. Garnsworthy, I. Tapio +29 more
2019Science Advances357 citations Open access
Semantic Scholar
Explorative genome scan to detect candidate loci for adaptation along a gradient of altitude in the common frog (Rana temporaria).
A. Bonin, P. Taberlet, C. Miaud, F. Pompanon
2006Molecular biology and evolution329 citations Open access
Semantic Scholar
Adaptive Genetic Variation on the Landscape: Methods and Cases
S. Schoville, A. Bonin, O. François, S. Lobréaux +2 more
2012292 citations
Semantic Scholar
Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field
S. Manel, S. Joost, B. Epperson, R. Holderegger +5 more
2010Molecular Ecology280 citations Open access
Semantic Scholar
Population Adaptive Index: a New Method to Help Measure Intraspecific Genetic Diversity and Prioritize Populations for Conservation
A. Bonin, F. Nicolè, F. Pompanon, C. Miaud +1 more
2007Conservation Biology235 citations
Semantic Scholar
Revised phosphate–water fractionation equation reassessing paleotemperatures derived from biogenic apatite
E. Pucéat, M. Joachimski, A. Bouilloux, F. Monna +7 more
2010221 citations
Semantic Scholar
Spatial Representativeness of Environmental DNA Metabarcoding Signal for Fish Biodiversity Assessment in a Natural Freshwater System
Raphaël Civade, T. Dejean, A. Valentini, N. Roset +4 more
2016PLoS ONE209 citations Open access
Semantic Scholar
Population genetics reveals origin and number of founders in a biological invasion
G. Ficetola, A. Bonin, C. Miaud
2008Molecular Ecology191 citations
Semantic Scholar
Body size determines soil community assembly in a tropical forest.
L. Zinger, P. Taberlet, H. Schimann, A. Bonin +16 more
2018Molecular Ecology166 citations Open access
Semantic Scholar
Spatial analysis method (sam): a software tool combining molecular and environmental data to identify candidate loci for selection
S. Joost, M. Kalbermatten, A. Bonin
2008Molecular Ecology Resources134 citations Open access
Semantic Scholar
Environmental DNA for biomonitoring
J. Pawłowski, A. Bonin, F. Boyer, T. Cordier +1 more
2021Molecular Ecology123 citations Open access
Semantic Scholar
A road map for molecular ecology
R. Andrew, L. Bernatchez, A. Bonin, C. A. Buerkle +14 more
2013Molecular Ecology120 citations
Semantic Scholar
Oral Samples as Non-Invasive Proxies for Assessing the Composition of the Rumen Microbial Community
I. Tapio, K. Shingfield, N. McKain, A. Bonin +6 more
2016PLoS ONE117 citations Open access
Semantic Scholar
Comparative analysis of response to selection with three insecticides in the dengue mosquito Aedes aegypti using mRNA sequencing
J. David, Frédéric Faucon, Alexia Chandor-Proust, R. Poupardin +4 more
2014BMC Genomics99 citations Open access
Semantic Scholar
Effective population size is positively correlated with levels of adaptive divergence among annual sunflowers.
J. L. Strasburg, N. Kane, Andrew R. Raduski, A. Bonin +2 more
2011Molecular biology and evolution92 citations Open access
Semantic Scholar
The generality of cryptic dietary niche differences in diverse large-herbivore assemblages
Johan Pansu, Matthew C. Hutchinson, T. M. Anderson, M. Te Beest +27 more
2022Proceedings of the National Academy of Sciences of the United States of America89 citations Open access
Semantic Scholar
Effect of DNA extraction and sample preservation method on rumen bacterial population.
K. Fliegerová, I. Tapio, A. Bonin, J. Mrázek +10 more
2014Anaerobe89 citations Open access
Semantic Scholar
Isoprenoid emissions of Quercus spp. (Q. suber and Q. ilex) in mixed stands contrasting in interspecific genetic introgression.
M. Staudt, C. Mir, R. Joffre, S. Rambal +3 more
2004New Phytologist78 citations
Semantic Scholar
A MITE-based genotyping method to reveal hundreds of DNA polymorphisms in an animal genome after a few generations of artificial selection
A. Bonin, M. Paris, L. Després, G. Tetreau +2 more
2008BMC Genomics68 citations Open access
Semantic Scholar
Data Production and Analysis in Population Genomics
F. Pompanon, A. Bonin
2012Methods in Molecular Biology63 citations Open access
Semantic Scholar
Genome scan in the mosquito Aedes rusticus: population structure and detection of positive selection after insecticide treatment
M. Paris, S. Boyer, A. Bonin, Amandine Collado +2 more
2010Molecular Ecology63 citations
Semantic Scholar
Population genomics: a new generation of genome scans to bridge the gap with functional genomics
A. Bonin
2008Molecular Ecology63 citations Open access
Semantic Scholar
Comparison of markers for the monitoring of freshwater benthic biodiversity through DNA metabarcoding
G. Ficetola, F. Boyer, A. Valentini, A. Bonin +5 more
2020Molecular Ecology60 citations Open access
Semantic Scholar
Evidence for a complex Valanginian nannoconid decline in the Vocontian basin (South East France)
N. Barbarin, A. Bonin, E. Mattioli, E. Pucéat +5 more
201258 citations
Semantic Scholar
Impaired liver function in Xenopus tropicalis exposed to benzo[a]pyrene: transcriptomic and metabolic evidence
C. Regnault, I. Worms, C. Oger-Desfeux, C. Melodelima +7 more
2014BMC Genomics51 citations Open access
Semantic Scholar
Morphological vs. DNA metabarcoding approaches for the evaluation of stream ecological status with benthic invertebrates: Testing different combinations of markers and strategies of data filtering
A. Meyer, F. Boyer, A. Valentini, A. Bonin +9 more
2020Molecular Ecology50 citations Open access
Semantic Scholar
Use of amplified fragment length polymorphism (AFLP) markers in surveys of vertebrate diversity.
A. Bonin, F. Pompanon, P. Taberlet
2005Methods in Enzymology50 citations
Semantic Scholar
Modelling technical and biological biases in macroinvertebrate community assessment from bulk preservative using multiple metabarcoding markers
Filipa M. S. Martins, M. Porto, M. Feio, B. Egeter +4 more
2020Molecular Ecology49 citations Open access
Semantic Scholar
Allele Identification for Transcriptome-Based Population Genomics in the Invasive Plant Centaurea solstitialis
Katrina M. Dlugosch, Z. Lai, A. Bonin, J. Hierro +1 more
2013G3: Genes, Genomes, Genetics49 citations Open access
Semantic Scholar
High levels of primary biogenic organic aerosols in the atmosphere in summer are driven by only a few microbial taxa from the leaves of surrounding plants
A. Samaké, A. Bonin, J. Jaffrezo, P. Taberlet +5 more
202048 citations Open access
Semantic Scholar
Biodiversity monitoring using environmental DNA
N. Rodríguez-Ezpeleta, L. Zinger, A. Kinziger, H. Bik +7 more
2021Molecular Ecology Resources45 citations Open access
Semantic Scholar
Effects of soil preservation for biodiversity monitoring using environmental DNA
Alessia Guerrieri, A. Bonin, T. Münkemüller, L. Gielly +2 more
2020Molecular Ecology42 citations Open access
Semantic Scholar
Optimal sequence similarity thresholds for clustering of molecular operational taxonomic units in DNA metabarcoding studies
A. Bonin, Alessia Guerrieri, G. Ficetola
2021Molecular Ecology Resources41 citations Open access
Semantic Scholar
The Retreat of Mountain Glaciers since the Little Ice Age: A Spatially Explicit Database
S. Marta, R. Azzoni, D. Fugazza, Levan Tielidze +41 more
2021International Conference on Data Technologies and Applications36 citations Open access
Semantic Scholar
Candidate genes revealed by a genome scan for mosquito resistance to a bacterial insecticide: sequence and gene expression variations
A. Bonin, M. Paris, G. Tetreau, J. David +1 more
2009BMC Genomics35 citations Open access
Semantic Scholar
Gene expression patterns and sequence polymorphisms associated with mosquito resistance to Bacillus thuringiensis israelensis toxins
L. Després, Renaud Stalinski, G. Tetreau, M. Paris +4 more
2014BMC Genomics34 citations Open access
Semantic Scholar
High levels of primary biogenic organic aerosols are driven by only a few plant-associated microbial taxa
A. Samaké, A. Bonin, J. Jaffrezo, P. Taberlet +5 more
2020Atmospheric Chemistry and Physics32 citations Open access
Semantic Scholar
Diet shifts by adult flightless dung beetles Circellium bacchus, revealed using DNA metabarcoding, reflect complex life histories
G. Kerley, Marietjie Landman, G. Ficetola, F. Boyer +4 more
2018Oecologia30 citations Open access
Semantic Scholar
Chemical and biological insecticides select distinct gene expression patterns in Aedes aegypti mosquito
L. Després, Renaud Stalinski, Frédéric Faucon, V. Navratil +8 more
2014Biology Letters28 citations Open access
Semantic Scholar
Sharing and reporting benefits from biodiversity research
E. Marden, R. Abbott, F. Austerlitz, D. Ortiz-Barrientos +53 more
2020Molecular Ecology27 citations Open access
Semantic Scholar
Environmental DNA of insects and springtails from caves reveals complex processes of eDNA transfer in soils.
E. Lunghi, B. Valle, Alessia Guerrieri, A. Bonin +3 more
2022Science of the Total Environment24 citations Open access
Semantic Scholar
The genetic architecture of a complex trait: Resistance to multiple toxins produced by Bacillus thuringiensis israelensis in the dengue and yellow fever vector, the mosquito Aedes aegypti.
A. Bonin, M. Paris, H. Frérot, E. Bianco +2 more
2015Infection, Genetics and Evolution23 citations
Semantic Scholar

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