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Rency S. Varghese · SciRah

Researcher profile · Semantic Scholar

Rency S. Varghese

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Rency S. Varghese — researcher profile on SciRah

h-index: 26
Works: 96
Citations: 5,538

Most-cited papers

Peak selection from MALDI-TOF mass spectra using ant colony optimization
H. Ressom, Rency S. Varghese, S. Drake, G. Hortin +3 more
2007Bioinform.3,266 citations Open access
Semantic Scholar
Utilization of Metabolomics to Identify Serum Biomarkers for Hepatocellular Carcinoma in Patients with Liver Cirrhosis
H. Ressom, Jun-Feng Xiao, L. Tuli, Rency S. Varghese +10 more
2012Analytica Chimica Acta155 citations Open access
Semantic Scholar
LC-MS Based Serum Metabolomics for Identification of Hepatocellular Carcinoma Biomarkers in Egyptian Cohort
Jun-Feng Xiao, Rency S. Varghese, Bin Zhou, Mohammad R. Nezami Ranjbar +12 more
2012Journal of Proteome Research137 citations Open access
Semantic Scholar
Detection of Hepatocellular Carcinoma Using Glycomic Analysis
Radoslav Goldman, H. Ressom, Rency S. Varghese, Lenka Goldman +8 more
2009Clinical Cancer Research135 citations Open access
Semantic Scholar
The mitochondrial citrate carrier, SLC25A1, drives stemness and therapy resistance in non-small cell lung cancer
Harvey R. Fernandez, Shreyas Gadre, Ming-Jun Tan, G. Graham +16 more
2018Cell Death and Differentiation131 citations Open access
Semantic Scholar
Dysregulated metabolic pathways in age-related macular degeneration
Meng Zhang, Nisi Jiang, Yi Chu, O. Postnikova +4 more
2020Scientific Reports124 citations Open access
Semantic Scholar
Enrichment of low molecular weight fraction of serum for MS analysis of peptides associated with hepatocellular carcinoma
E. Orvisky, S. Drake, B. M. Martin, M. Abdel-Hamid +7 more
2006Proteomics123 citations
Semantic Scholar
Analysis of mass spectral serum profiles for biomarker selection
H. Ressom, Rency S. Varghese, M. Abdel-Hamid, S. A. Eissa +7 more
2005Bioinform.94 citations
Semantic Scholar
GC-MS Based Plasma Metabolomics for Identification of Candidate Biomarkers for Hepatocellular Carcinoma in Egyptian Cohort
Mohammad R. Nezami Ranjbar, Yue Luo, C. Di Poto, Rency S. Varghese +8 more
2015PLoS ONE82 citations Open access
Semantic Scholar
LC-MS/MS based Serum Proteomics for Identification of Candidate Biomarkers for Hepatocellular Carcinoma
Tsung-Heng Tsai, Ehwang Song, Rui Zhu, C. Di Poto +9 more
2015Proteomics82 citations Open access
Semantic Scholar
Metabolomic Analysis of Liver Tissues for Characterization of Hepatocellular Carcinoma
A. Ferrarini, C. Di Poto, Shisi He, C. Tu +11 more
2019Journal of Proteome Research69 citations Open access
Semantic Scholar
Classification algorithms for phenotype prediction in genomics and proteomics.
H. Ressom, Rency S. Varghese, Zhen Zhang, J. Xuan +1 more
2008Frontiers in Bioscience68 citations Open access
Semantic Scholar
Enhanced expression of SOS1 is detected in prostate cancer epithelial cells from African American men
O. Timofeeva, Xueping Zhang, H. Ressom, Rency S. Varghese +8 more
2009International Journal of Oncology67 citations Open access
Semantic Scholar
Increasing the efficiency of fuzzy logic-based gene expression data analysis.
H. Ressom, R. Reynolds, Rency S. Varghese
2003Physiological Genomics66 citations
Semantic Scholar
Identification of N-Glycan Serum Markers Associated with Hepatocellular Carcinoma from Mass Spectrometry Data
Zhi-Qun Tang, Rency S. Varghese, Slávka Bekešová, C. Loffredo +6 more
2010Journal of Proteome Research61 citations Open access
Semantic Scholar
Analysis of MALDI-TOF mass spectrometry data for discovery of peptide and glycan biomarkers of hepatocellular carcinoma.
H. Ressom, Rency S. Varghese, Lenka Goldman, Yanming An +7 more
2008Journal of Proteome Research56 citations Open access
Semantic Scholar
Candidate markers for the detection of hepatocellular carcinoma in low-molecular weight fraction of serum.
Radoslav Goldman, H. Ressom, M. Abdel-Hamid, Lenka Goldman +9 more
2007Carcinogenesis52 citations Open access
Semantic Scholar
Pathway and Network Approaches for Identification of Cancer Signature Markers from Omics Data
Jinlian Wang, Yi-Ming Zuo, Yan-gao Man, I. Avital +6 more
2015Journal of Cancer51 citations Open access
Semantic Scholar
LC–MS Profiling of N-Glycans Derived from Human Serum Samples for Biomarker Discovery in Hepatocellular Carcinoma
Tsung-Heng Tsai, Min-Kun Wang, C. Di Poto, Yun-Li Hu +10 more
2014Journal of Proteome Research51 citations Open access
Semantic Scholar
Metabolomic Characterization of Hepatocellular Carcinoma in Patients with Liver Cirrhosis for Biomarker Discovery
C. Di Poto, A. Ferrarini, Yi Zhao, Rency S. Varghese +10 more
2016Cancer Epidemiology, Biomarkers and Prevention44 citations Open access
Semantic Scholar
Transcriptome of rhesus macaque (Macaca mulatta) exposed to total-body irradiation
Yao-Xiang Li, Jatinder Singh, Rency S. Varghese, Yubo Zhang +3 more
2020Scientific Reports35 citations Open access
Semantic Scholar
Analysis of LC-MS data for characterizing the metabolic changes in response to radiation.
Rency S. Varghese, A. Cheema, P. Cheema, M. Bourbeau +5 more
2010Journal of Proteome Research32 citations
Semantic Scholar
Metabolomic profiling of breast tumors using ductal fluid
L. M. Do Canto, C. Marian, Rency S. Varghese, Jaeil Ahn +9 more
2016International Journal of Oncology30 citations Open access
Semantic Scholar
INDEED: Integrated differential expression and differential network analysis of omic data for biomarker discovery
Yi-Ming Zuo, Yi Cui, C. Di Poto, Rency S. Varghese +3 more
2016Methods28 citations Open access
Semantic Scholar
Biomarker Discovery for Hepatocellular Carcinoma in Patients with Liver Cirrhosis Using Untargeted Metabolomics and Lipidomics Studies
Md Mamunur Rashid, Rency S. Varghese, Yuansong Ding, H. Ressom
2023Metabolites27 citations Open access
Semantic Scholar
Integrated analysis of ATM mediated gene and protein expression impacting cellular metabolism.
A. Cheema, O. Timofeeva, Rency S. Varghese, Alexandre Dimtchev +7 more
2011Journal of Proteome Research26 citations Open access
Semantic Scholar
Acquisition of Estrogen Independence Induces TOB1-Related Mechanisms Supporting Breast Cancer Cell Proliferation
Yong-Wei Zhang, Rochelle E. Nasto, Rency S. Varghese, Sandra A. Jablonski +13 more
2015Oncogene25 citations Open access
Semantic Scholar
MicroRNA-483-5p Inhibits Hepatocellular Carcinoma Cell Proliferation, Cell Steatosis, and Fibrosis by Targeting PPARα and TIMP2
S. Niture, Sashi Gadi, Qi Qi, M. Gyamfi +6 more
2023Cancers24 citations Open access
Semantic Scholar
Identification of race-associated metabolite biomarkers for hepatocellular carcinoma in patients with liver cirrhosis and hepatitis C virus infection
C. Di Poto, Shisi He, Rency S. Varghese, Yi Zhao +13 more
2018PLoS ONE23 citations Open access
Semantic Scholar
Integrative Analysis of DNA Methylation and microRNA Expression Reveals Mechanisms of Racial Heterogeneity in Hepatocellular Carcinoma
Rency S. Varghese, Megan E. Barefoot, Sidharth S. Jain, Yi-Fan Chen +7 more
2021Frontiers in Genetics22 citations Open access
Semantic Scholar
Applications of fuzzy logic in genomics
H. Ressom, P. Natarajan, Rency S. Varghese, M. Musavi
2005Fuzzy Sets Syst.22 citations
Semantic Scholar
Fuzzy logic-based gene regulatory network
H. Ressom, Dali Wang, Rency S. Varghese, R. Reynolds
2003The 12th IEEE International Conference on Fuzzy Systems, 2003. FUZZ '03.21 citations
Semantic Scholar
Ion annotation-assisted analysis of LC-MS based metabolomic experiment
Rency S. Varghese, Bin Zhou, Mohammad R. Nezami Ranjbar, Yi Zhao +1 more
2012Proteome Science20 citations Open access
Semantic Scholar
Using a spike-in experiment to evaluate analysis of LC-MS data
L. Tuli, Tsung-Heng Tsai, Rency S. Varghese, Jun-Feng Xiao +2 more
20102010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)20 citations Open access
Semantic Scholar
Inhibition of discoidin domain receptor (DDR)-1 with nilotinib alters CSF miRNAs and is associated with reduced inflammation and vascular fibrosis in Alzheimer’s disease
Max Stevenson, Rency S. Varghese, M. Hebron, Xiaoguang Liu +4 more
2023Journal of Neuroinflammation18 citations Open access
Semantic Scholar
Analysis of MALDI-TOF Serum Profiles for Biomarker Selection and Sample Classification
H. Ressom, Rency S. Varghese, E. Orvisky, S. Drake +4 more
2005IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology18 citations
Semantic Scholar
Ant Colony Optimization for Biomarker Identification from MALDI-TOF Mass Spectra
H. Ressom, Rency S. Varghese, E. Orvisky, S. Drake +4 more
2006Annual International Conference of the IEEE Engineering in Medicine and Biology Society15 citations
Semantic Scholar
Convolutional Neural Network-Based Compound Fingerprint Prediction for Metabolite Annotation
Shijinqiu Gao, Hoi Yan Katharine Chau, Kuijun Wang, Hong-Yu Ao +2 more
2022Metabolites14 citations Open access
Semantic Scholar
Metabolomic Analysis of Plasma from Breast Cancer Patients Using Ultra-High-Performance Liquid Chromatography Coupled with Mass Spectrometry: An Untargeted Study
Patricia A. Da Cunha, D. Nițușcă, L. Canto, Rency S. Varghese +4 more
2022Metabolites13 citations Open access
Semantic Scholar
Evaluation of Metabolite Biomarkers for Hepatocellular Carcinoma through Stratified Analysis by Gender, Race and Alcoholic Cirrhosis
Jun-Feng Xiao, Yi Zhao, Rency S. Varghese, Bin Zhou +6 more
2013Cancer Epidemiology, Biomarkers and Prevention13 citations Open access
Semantic Scholar
Alteration of Autophagy and Glial Activity in Nilotinib-Treated Huntington’s Disease Patients
Karen E. Anderson, Max Stevenson, Rency S. Varghese, M. Hebron +6 more
2022Metabolites12 citations Open access
Semantic Scholar
Multi-omic Pathway and Network Analysis to Identify Biomarkers for Hepatocellular Carcinoma
Megan E. Barefoot, Rency S. Varghese, Yuan Zhou, C. Di Poto +2 more
2019Annual International Conference of the IEEE Engineering in Medicine and Biology Society12 citations Open access
Semantic Scholar
Functional Proteomics Analysis to Study ATM Dependent Signaling in Response to Ionizing Radiation
A. Cheema, Rency S. Varghese, O. Timofeeva, Lihua Zhang +6 more
2013Radiation Research10 citations Open access
Semantic Scholar
Hepatitis C virus Genotype 1a core gene nucleotide patterns associated with hepatocellular carcinoma risk.
B. Korba, K. Shetty, A. Medvedev, Prasanth Viswanathan +6 more
2015Journal of General Virology9 citations Open access
Semantic Scholar
Human Fibroblasts for Large-Scale “Omics” Investigations of ATM Gene Function
M. Jung, O. Timofeeva, A. Cheema, Rency S. Varghese +2 more
2011Advances in Experimental Medicine and Biology9 citations Open access
Semantic Scholar
Particle swarm optimization for analysis of mass spectral serum profiles
H. Ressom, Rency S. Varghese, Daniel Saha, E. Orvisky +7 more
2005Annual Conference on Genetic and Evolutionary Computation9 citations
Semantic Scholar
RNA-Seq Data Analysis
James Li, Rency S. Varghese, H. Ressom
2024Methods in molecular biology8 citations
Semantic Scholar
Discovery of potential urine-accessible metabolite biomarkers associated with muscle disease and corticosteroid response in the mdx mouse model for Duchenne
M. Thangarajh, Ai-Ping Zhang, Kirandeep Gill, H. Ressom +6 more
2019PLoS ONE8 citations Open access
Semantic Scholar
Multi-Omics Feature Selection to Identify Biomarkers for Hepatocellular Carcinoma
Rency S. Varghese, Xin-Ran Zhang, Sarada Giridharan, M. Sajid +3 more
2025Metabolites7 citations Open access
Semantic Scholar
INDEED: R package for network based differential expression analysis
Zhenzhi Li, Yi-Ming Zuo, Chaohui Xu, Rency S. Varghese +1 more
2018IEEE International Conference on Bioinformatics and Biomedicine7 citations Open access
Semantic Scholar

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