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M. Benhamed · SciRah

Researcher profile · Semantic Scholar

M. Benhamed

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M. Benhamed — researcher profile on SciRah

h-index: 49
Works: 165
Citations: 12K

Most-cited papers

R-Loop Mediated trans Action of the APOLO Long Noncoding RNA.
F. Ariel, L. Lucero, A. Christ, María Florencia Mammarella +8 more
2020Molecules and Cells228 citations Open access
Semantic Scholar
The Plant DNA Damage Response: Signaling Pathways Leading to Growth Inhibition and Putative Role in Response to Stress Conditions
Maherun Nisa, Ying Huang, M. Benhamed, C. Raynaud
2019Frontiers in Plant Science195 citations Open access
Semantic Scholar
Wheat chromatin architecture is organized in genome territories and transcription factories
L. Concia, Alaguraj Veluchamy, J. S. Ramirez-Prado, A. Martin-Ramirez +22 more
2020Genome Biology119 citations Open access
Semantic Scholar
HSFA1a modulates plant heat stress responses and alters the 3D chromatin organization of enhancer-promoter interactions
Ying Huang, Jing An, S. Sircar, Clara Bergis +27 more
2023Nature Communications118 citations Open access
Semantic Scholar
Transcriptional integration of the responses to iron availability in Arabidopsis by the bHLH factor ILR3.
N. Tissot, Kévin Robe, Fei Gao, Susana Grant-Grant +12 more
2019New Phytologist108 citations Open access
Semantic Scholar
The lncRNA APOLO interacts with the transcription factor WRKY42 to trigger root hair cell expansion in response to cold
Michaël Moison, Javier Martínez Pacheco, L. Lucero, Camille Fonouni-Farde +9 more
2020bioRxiv101 citations Open access
Semantic Scholar
Heat stress transcription factors as the central molecular rheostat to optimize plant survival and recovery from heat stress
Ayat Bakery, Stavros Vraggalas, Boushra Shalha, Harsh Chauhan +2 more
2024New Phytologist89 citations Open access
Semantic Scholar
The Arabidopsis lncRNA ASCO modulates the transcriptome through interaction with splicing factors
Richard Rigo, J. Bazin, Natali Romero-Barrios, Michaël Moison +8 more
2020EMBO Reports81 citations Open access
Semantic Scholar
The Polycomb protein LHP1 regulates Arabidopsis thaliana stress responses through the repression of the MYC2-dependent branch of immunity.
J. S. Ramirez-Prado, D. Latrasse, N. Rodriguez-Granados, Ying Huang +8 more
2019The Plant Journal80 citations Open access
Semantic Scholar
The control of carpel determinacy pathway leads to sex determination in cucurbits
Siqi Zhang, Feng-Quan Tan, Ching-Hui Chung, Filip Slavković +10 more
2022Science74 citations
Semantic Scholar
The LEAFY floral regulator displays pioneer transcription factor properties
X. Lai, Romain Blanc-Mathieu, Loïc Grandvuillemin, Ying Huang +13 more
2021bioRxiv70 citations Open access
Semantic Scholar
GCN5 modulates salicylic acid homeostasis by regulating H3K14ac levels at the 5′ and 3′ ends of its target genes
Soonkap Kim, S. Piquerez, J. S. Ramirez-Prado, E. Mastorakis +17 more
2020Nucleic Acids Research64 citations Open access
Semantic Scholar
The LRR receptor-like kinase ALR1 is a plant aluminum ion sensor
Zhong J. Ding, Chen Xu, Jing Yan, Yu-Xuan Wang +15 more
2024Cell Research55 citations Open access
Semantic Scholar
Polycomb-dependent differential chromatin compartmentalization determines gene coregulation in Arabidopsis
Ying Huang, Sanchari Sicar, J. S. Ramirez-Prado, Deborah Manza-Mianza +17 more
2021Genome Research50 citations Open access
Semantic Scholar
The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABA
Thomas Roulé, A. Christ, Nosheen Hussain, Ying Huang +6 more
2020bioRxiv50 citations Open access
Semantic Scholar
The Arabidopsis receptor-like kinase WAKL4 limits cadmium uptake via phosphorylation and degradation of NRAMP1 transporter
Jun-Jie Yuan, Ya-Nan Zhao, Su-Hang Yu, Ying Sun +9 more
2024Nature Communications49 citations Open access
Semantic Scholar
A new role for histone demethylases in the maintenance of plant genome integrity
Javier Antunez-Sanchez, Matthew Naish, J. S. Ramirez-Prado, Sho Ohno +14 more
2020bioRxiv46 citations Open access
Semantic Scholar
Arabidopsis S2Lb links AtCOMPASS-like and SDG2 activity in H3K4me3 independently from histone H2B monoubiquitination
Anne-Sophie Fiorucci, Clara Bourbousse, L. Concia, Martin Rougée +16 more
2019Genome Biology44 citations Open access
Semantic Scholar
Peer Review #1 of "Genome-wide analysis of growth-regulating factors (GRFs) in Triticum aestivum (v0.1)"
Wen-Di Huang, Yi-Qin He, Lei Y. Yang, Chen Lu +472 more
202142 citations Open access
Semantic Scholar
A hierarchical transcriptional network activates specific CDK inhibitors that regulate G2 to control cell size and number in Arabidopsis
Yuji Nomoto, Hirotomo Takatsuka, Kesuke Yamada, Toshiya Suzuki +16 more
2021bioRxiv41 citations Open access
Semantic Scholar
The Arabidopsis APOLO and human UPAT sequence-unrelated long noncoding RNAs can modulate DNA and histone methylation machineries in plants
Camille Fonouni-Farde, A. Christ, T. Blein, María Florencia Legascue +10 more
2022Genome Biology40 citations Open access
Semantic Scholar
A pathogenesis‐related protein GmPR08‐Bet VI promotes a molecular interaction between the GmSHMT08 and GmSNAP18 in resistance to Heterodera glycines
N. Lakhssassi, Sarbottam Piya, S. Bekal, Shiming Liu +13 more
2020Plant Biotechnology Journal40 citations Open access
Semantic Scholar
The Seed Development Factors TT2 and MYB5 Regulate Heat Stress Response in Arabidopsis
Pierre Jacob, Gwilherm Brisou, M. Dalmais, J. Thévenin +10 more
2021Genes35 citations Open access
Semantic Scholar
Ethylene produced in carpel primordia controls CmHB40 expression to inhibit stamen development
Dali Rashid, R. Devani, N. Rodriguez-Granados, Fadi Abou-Choucha +15 more
2023Nature Plants33 citations
Semantic Scholar
New Phytologist Supporting Information Article title: Histone Post Translational Modifications rather than DNA methylation underlie gene reprogramming in pollination-dependent and pollination-independent fruit set in tomato
Guojian Hu, Baowen Huang, Keke Wang, P. Frasse +7 more
202033 citations
Semantic Scholar
New insights into homoeologous copy number variations in the hexaploid wheat genome
C. Juery, L. Concia, R. De Oliveira, Nathan Papon +5 more
2020bioRxiv30 citations Open access
Semantic Scholar
INDETERMINATE-DOMAIN 4 (IDD4) coordinates immune responses with plant-growth in Arabidopsis thaliana
Ronny Voelz, Soonkap Kim, Jianing Mi, Anamika A Rawat +9 more
2019PLoS Pathogens29 citations Open access
Semantic Scholar
TCTP and CSN4 control cell cycle progression and development by regulating CULLIN1 neddylation in plants and animals
Léo Betsch, Véronique Boltz, Florian Brioudes, Garance Pontier +10 more
2019PLoS Genetics27 citations Open access
Semantic Scholar
The plant DNA polymerase theta is essential for the repair of replication-associated DNA damage.
Maherun Nisa, Clara Bergis, J. Pedroza-García, Jeannine Drouin-Wahbi +4 more
2021The Plant Journal26 citations Open access
Semantic Scholar
A plant-specific clade of serine/arginine-rich proteins regulates RNA splicing homeostasis and thermotolerance in tomato
Remus R. E. Rosenkranz, Stavros Vraggalas, Mario Keller, Srimeenakshi Sankaranarayanan +12 more
2024bioRxiv25 citations Open access
Semantic Scholar
Cantaloupe melon genome reveals 3D chromatin features and structural relationship with the ancestral cucurbitaceae karyotype
Clement Pichot, Anis Djari, Joseph Tran, M. Verdenaud +16 more
2021iScience24 citations Open access
Semantic Scholar
Distinctive and complementary roles of E2F transcription factors during plant replication stress responses.
Maherun Nisa, Thomas Eekhout, Clara Bergis, J. Pedroza-García +13 more
2023Molecular Plant23 citations Open access
Semantic Scholar
Salinity stress-induced phosphorylation of INDETERMINATE-DOMAIN 4 (IDD4) by MPK6 regulates plant growth adaptation in Arabidopsis
Anamika A Rawat, Ronny Voelz, Arsheed H. Sheikh, K. Mariappan +7 more
2023Frontiers in Plant Science20 citations Open access
Semantic Scholar
Integrative genome-wide analysis reveals the role of WIP proteins in inhibition of growth and development
Maria Victoria Gomez Roldan, Farhaj Izhaq, M. Verdenaud, J. Eleblu +10 more
2020Communications Biology20 citations Open access
Semantic Scholar
LHP1-mediated epigenetic buffering of subgenome diversity and defense responses confers genome plasticity and adaptability in allopolyploid wheat
Zijuan Li, Yu-Yun Zhang, Ci-Hang Ding, Yan Chen +21 more
2023Nature Communications19 citations Open access
Semantic Scholar
Long noncoding RNA‐mediated epigenetic regulation of auxin‐related genes controls shade avoidance syndrome in Arabidopsis
María Florencia Mammarella, L. Lucero, Nosheen Hussain, Aitor Muñoz-Lopez +10 more
2023EMBO Journal19 citations Open access
Semantic Scholar
The canonical E2Fs together with RETINOBLASTOMA-RELATED are required to establish quiescence during plant development
Magdolna Gombos, C. Raynaud, Yuji Nomoto, Eszter Molnár +18 more
2022bioRxiv19 citations Open access
Semantic Scholar
Folding Features and Dynamics of 3D Genome Architecture in Plant Fungal Pathogens
Chongjing Xia, Liang Huang, Jie Huang, H. Zhang +7 more
2022Microbiology spectrum18 citations Open access
Semantic Scholar
DNA polymerase epsilon is required for heterochromatin maintenance in Arabidopsis
Pierre Bourguet, Leticia López-González, Angeles Gomez-Zambrano, T. Pélissier +10 more
2020Genome Biology17 citations Open access
Semantic Scholar
Predictable and stable epimutations induced during clonal plant propagation with embryonic transcription factor
A. Wibowo, Javier Antunez-Sanchez, Alexander Dawson, Jonathan Price +8 more
2022PLoS Genetics15 citations Open access
Semantic Scholar
Immunity onset alters plant chromatin and utilizes EDA16 to regulate oxidative homeostasis
A. J. Pardal, S. Piquerez, Ana Dominguez-Ferreras, L. Frungillo +8 more
2021PLoS Pathogens15 citations Open access
Semantic Scholar
Overlapping roles of spliceosomal components SF3B1 and PHF5A in rice splicing regulation
Haroon Butt, J. Bazin, S. Alshareef, Ayman Eid +4 more
2021Communications Biology13 citations Open access
Semantic Scholar
CmLHP1 proteins play a key role in plant development and sex determination in melon (Cucumis melo).
N. Rodriguez-Granados, J. S. Ramirez-Prado, Rim Brik-Chaouche, J. An +12 more
2021The Plant Journal13 citations Open access
Semantic Scholar
The PP2CH- and PBL27-mediated phosphorylation switch of aluminium ion receptor PSKR1/ALR1 controls plant aluminum sensing ability
Chen Xu, Ke-Ke Gao, Meng-Qi Cui, Yu-Xuan Wang +10 more
2025Nature Plants12 citations
Semantic Scholar
Priming thermotolerance: unlocking heat resilience for climate-smart crops
Priyanka Chopra, Natalia Sapia, Omid Karami, Pawan Kumar +10 more
2025Philosophical transactions of the Royal Society of London. Series B, Biological sciences12 citations Open access
Semantic Scholar
An atlas of the tomato epigenome reveals that KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac distribution
Jing An, Rim Brik Chaouche, Leonardo I. Pereyra-Bistraín, Hugo Zalzalé +22 more
2024Proceedings of the National Academy of Sciences of the United States of America12 citations Open access
Semantic Scholar
Arabidopsis Topless-related 1 mitigates physiological damage and growth penalties of induced immunity.
Thomas Griebel, D. Lapin, Federica Locci, B. Kracher +4 more
2023New Phytologist12 citations Open access
Semantic Scholar
A clade of receptor-like cytoplasmic kinases and 14-3-3 proteins coordinate inositol hexaphosphate accumulation
Li-Li Xu, Meng-Qi Cui, Chen Xu, Miao-Jing Zhang +8 more
2024Nature Communications11 citations Open access
Semantic Scholar
Genetic–epigenetic interplay in the determination of plant 3D genome organization
Xiaoning He, Chloé Dias Lopes, Leonardo I. Pereyra-Bistraín, Ying Huang +21 more
2024Nucleic Acids Research10 citations Open access
Semantic Scholar
Histone Modification ChIP-seq on Arabidopsis thaliana Plantlets.
J. S. Ramirez-Prado, D. Latrasse, M. Benhamed
2021Bio-protocol10 citations Open access
Semantic Scholar

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