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J. Colombet · SciRah

Researcher profile · Semantic Scholar

J. Colombet

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J. Colombet — researcher profile on SciRah

h-index: 26
Works: 96
Citations: 2,268

Most-cited papers

Dysbiosis in inflammatory bowel disease: a role for bacteriophages?
P. Lepage, J. Colombet, P. Marteau, T. Sime-Ngando +2 more
2008Gut233 citations
Semantic Scholar
Assessing the Diversity and Specificity of Two Freshwater Viral Communities through Metagenomics
S. Roux, F. Enault, A. Robin, V. Ravet +5 more
2012PLoS ONE228 citations Open access
Semantic Scholar
Monitoring human enteric viruses in wastewater and relevance to infections encountered in the clinical setting: a one-year experiment in central France, 2014 to 2015
Maxime Bisseux, J. Colombet, A. Mirand, A. Roque-Afonso +7 more
2018Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin132 citations Open access
Semantic Scholar
Diversity of virus-host systems in hypersaline Lake Retba, Senegal.
T. Sime-Ngando, S. Lucas, A. Robin, K. Tucker +7 more
2011Environmental Microbiology114 citations
Semantic Scholar
Lack-of P-limitation of phytoplankton and heterotrophic prokaryotes in surface waters of three anticyclonic eddies in the stratified Mediterranean Sea
Tsuneo Tanaka, T. Thingstad, U. Christaki, J. Colombet +9 more
2011107 citations Open access
Semantic Scholar
Virioplankton 'pegylation': use of PEG (polyethylene glycol) to concentrate and purify viruses in pelagic ecosystems.
J. Colombet, A. Robin, L. Lavie, Y. Bettarel +2 more
2007Journal of Microbiological Methods98 citations
Semantic Scholar
Functional Responses of Bacterioplankton Diversity and Metabolism to Experimental Bottom-Up and Top-Down Forcings
A. S. Pradeep Ram, S. Chaibi-Slouma, J. Keshri, J. Colombet +1 more
2016Microbial Ecology91 citations
Semantic Scholar
Fungal Parasitism: Life Cycle, Dynamics and Impact on Cyanobacterial Blooms
M. Gerphagnon, D. Latour, J. Colombet, T. Sime-Ngando
2013PLoS ONE90 citations Open access
Semantic Scholar
Microbial food web dynamics during spring phytoplankton blooms in the naturally iron-fertilized Kerguelen area (Southern Ocean)
U. Christaki, D. Lefèvre, C. Georges, J. Colombet +5 more
201468 citations Open access
Semantic Scholar
Microbial food webs and metabolic state across oligotrophic waters of the Mediterranean Sea during summer
U. Christaki, F. Van Wambeke, D. Lefèvre, A. Lagaria +10 more
201166 citations Open access
Semantic Scholar
Diversity and comparative genomics of Microviridae in Sphagnum- dominated peatlands
A. Quaiser, A. Dufresne, Flore Ballaud, S. Roux +4 more
2015Frontiers in Microbiology64 citations Open access
Semantic Scholar
Microbial parasites make cyanobacteria blooms less of a trophic dead end than commonly assumed
M. Haraldsson, M. Gerphagnon, Pauline Bazin, J. Colombet +3 more
2018The ISME Journal62 citations Open access
Semantic Scholar
Co-occurrence of microcystin and anatoxin-a in the freshwater lake Aydat (France): Analytical and molecular approaches during a three-year survey.
M. Sabart, K. Crenn, F. Perrière, Angélique Abila +4 more
2015Harmful Algae62 citations
Semantic Scholar
An unknown oxidative metabolism substantially contributes to soil CO 2 emissions
V. Maire, G. Alvarez, J. Colombet, Aurélie Comby +7 more
201358 citations Open access
Semantic Scholar
Unexpected and novel putative viruses in the sediments of a deep-dark permanently anoxic freshwater habitat
Guillaume Borrel, J. Colombet, A. Robin, A. Lehours +2 more
2012The ISME Journal54 citations Open access
Semantic Scholar
Depth-Related Gradients of Viral Activity in Lake Pavin
J. Colombet, T. Sime-Ngando, H. Cauchie, G. Fonty +2 more
2006Applied and Environmental Microbiology54 citations
Semantic Scholar
Methanobacterium lacus sp. nov., isolated from the profundal sediment of a freshwater meromictic lake.
Guillaume Borrel, K. Joblin, Annie Guedon, J. Colombet +3 more
2012International Journal of Systematic and Evolutionary Microbiology49 citations
Semantic Scholar
Analysis of metagenomic data reveals common features of halophilic viral communities across continents.
S. Roux, F. Enault, V. Ravet, J. Colombet +9 more
2016Environmental Microbiology46 citations
Semantic Scholar
Spatial and temporal changes of parasitic chytrids of cyanobacteria
M. Gerphagnon, J. Colombet, D. Latour, T. Sime-Ngando
2017Scientific Reports40 citations Open access
Semantic Scholar
A Double Staining Method Using SYTOX Green and Calcofluor White for Studying Fungal Parasites of Phytoplankton
M. Gerphagnon, D. Latour, J. Colombet, T. Sime-Ngando
2013Applied and Environmental Microbiology40 citations Open access
Semantic Scholar
Unveiling Crucivirus Diversity by Mining Metagenomic Data
I. de la Higuera, George W. Kasun, Ellis L. Torrance, Alyssa Pratt +23 more
2020mBio38 citations Open access
Semantic Scholar
The relative importance of viral lysis and nanoflagellate grazing for prokaryote mortality in temperate lakes
Angia Sriram Pradeep Ram, S. Palesse, J. Colombet, A. Thouvenot +1 more
201433 citations
Semantic Scholar
Soil carbon dioxide emissions controlled by an extracellular oxidative metabolism identifiable by its isotope signature
B. Kéraval, A. Lehours, J. Colombet, C. Amblard +2 more
201631 citations Open access
Semantic Scholar
A New Freshwater Cyanosiphovirus Harboring Integrase
K. X. Zhong, C. Suttle, Anne-Claire Baudoux, É. Derelle +5 more
2018Frontiers in Microbiology29 citations Open access
Semantic Scholar
Seasonal microbial food web dynamics in contrasting Southern Ocean productivity regimes
U. Christaki, A. Guéneuguès, Yan Liu, S. Blain +9 more
2020Limnology and Oceanography27 citations Open access
Semantic Scholar
Differential impact of lytic viruses on the taxonomical resolution of freshwater bacterioplankton community structure.
J. Keshri, A. S. Pradeep Ram, J. Colombet, F. Perrière +2 more
2017Water Research27 citations
Semantic Scholar
Virioplankton distribution and activity in a tropical eutrophicated bay
Y. Bettarel, R. Arfi, T. Bouvier, M. Bouvy +4 more
200826 citations
Semantic Scholar
Seasonal Depth-Related Gradients in Virioplankton: Standing Stock and Relationships with Microbial Communities in Lake Pavin (France)
J. Colombet, M. Charpin, Agnès Robin, Christophe Portelli +3 more
2009Microbial Ecology25 citations
Semantic Scholar
Akinetes May Be Representative of Past Nostocalean Blooms: a Case Study of Their Benthic Spatiotemporal Distribution and Potential for Germination in a Eutrophic Lake
B. Legrand, Anne-Hélène le Jeune, J. Colombet, A. Thouvenot +1 more
2017Applied and Environmental Microbiology22 citations Open access
Semantic Scholar
Viral and grazer regulation of prokaryotic growth efficiency in temperate freshwater pelagic environments.
A. S. Pradeep Ram, J. Colombet, F. Perrière, A. Thouvenot +1 more
2015FEMS Microbiology Ecology22 citations
Semantic Scholar
Variations in Abundance, Genome Size, Morphology, and Functional Role of the Virioplankton in Lakes Annecy and Bourget over a 1-Year Period
X. Zhong, A. S. Pradeep Ram, J. Colombet, S. Jacquet
2013Microbial Ecology22 citations
Semantic Scholar
Molecular tools to detect anatoxin-a genes in aquatic ecosystems: Toward a new nested PCR-based method.
B. Legrand, J. Lesobre, J. Colombet, D. Latour +1 more
2016Harmful Algae20 citations
Semantic Scholar
Variable impact of geochemical gradients on the functional potential of bacteria, archaea, and phages from the permanently stratified Lac Pavin
Alexander L. Jaffe, Corinne Bardot, Anne-Hélène le Jeune, Jett Liu +6 more
2022bioRxiv19 citations Open access
Semantic Scholar
Dynamics of Viral Abundance and Diversity in a Sphagnum-Dominated Peatland: Temporal Fluctuations Prevail Over Habitat
Flore Ballaud, A. Dufresne, A. Francez, J. Colombet +2 more
2016Frontiers in Microbiology19 citations Open access
Semantic Scholar
Short-term variations in abundances and potential activities of viruses, bacteria and nanoprotists in Lake Bourget
T. Sime-Ngando, J. Colombet, S. Personnic, I. Domaizon +5 more
2008Ecological research18 citations
Semantic Scholar
High Lytic Infection Rates but Low Abundances of Prokaryote Viruses in a Humic Lake (Vassivière, Massif Central, France)
A. S. Pradeep Ram, S. Rasconi, M. Jobard, S. Palesse +2 more
2011Applied and Environmental Microbiology17 citations Open access
Semantic Scholar
Contrasting pelagic ecosystem functioning in eastern and western Baffin Bay revealed by trophic network modeling
B. Saint-Béat, B. Fath, Cyril Aubry, J. Colombet +13 more
2020Elementa: Science of the Anthropocene16 citations Open access
Semantic Scholar
Linking Host Prokaryotic Physiology to Viral Lifestyle Dynamics in a Temperate Freshwater Lake (Lake Pavin, France)
S. Palesse, J. Colombet, A. P. Pradeep Ram, T. Sime-Ngando
2014Microbial Ecology15 citations
Semantic Scholar
Viral Regulation of Prokaryotic Carbon Metabolism in a Hypereutrophic Freshwater Reservoir Ecosystem (Villerest, France)
A. S. Pradeep Ram, J. Colombet, F. Perrière, A. Thouvenot +1 more
2016Frontiers in Microbiology14 citations Open access
Semantic Scholar
Variable Viral and Grazer Control of Prokaryotic Growth Efficiency in Temperate Freshwater Lakes (French Massif Central)
A. S. Pradeep Ram, S. Palesse, J. Colombet, Marion Sabart +2 more
2013Microbial Ecology14 citations
Semantic Scholar
Use of PEG , Polyethylene glycol , to characterize the diversity of environmental viruses
J. Colombet, T. Sime-Ngando
201212 citations
Semantic Scholar
Seasonal Depth-Related Gradients in Virioplankton: Lytic Activity and Comparison with Protistan Grazing Potential in Lake Pavin (France)
J. Colombet, T. Sime-Ngando
2012Microbial Ecology12 citations
Semantic Scholar
An unknown respiration pathwaysubstantially contributes to soil CO2 emissions.
V. Maire, G. Alvarez, J. Colombet, Aurélie Comby +7 more
201211 citations Open access
Semantic Scholar
N-limited or N and P co-limited indications in the surface waters of three Mediterranean basins
Tsuneo Tanaka, T. Thingstad, U. Christaki, J. Colombet +9 more
201011 citations Open access
Semantic Scholar
Functional diversity of microbial eukaryotes in a meromictic lake: Coupling between metatranscriptomic and a trait-based approach.
Arthur Monjot, G. Bronner, Damien Courtine, Corinne Cruaud +10 more
2023Environmental Microbiology10 citations Open access
Semantic Scholar
Microbial Food Webs in the Mediterranean Sea Printer-friendly Version Interactive Discussion the Impact of Anticyclonic Mesoscale Structures on Microbial Food Webs in the Mediterranean Sea Microbial Food Webs in the Mediterranean Sea Printer-friendly Version Interactive Discussion Microbial Food Web
U. Christaki, F. Van Wambeke, D. Lefèvre, A. Lagaria +10 more
10 citations
Semantic Scholar
Discovery of High Abundances of Aster-Like Nanoparticles in Pelagic Environments: Characterization and Dynamics
J. Colombet, Hermine Billard, B. Viguès, S. Balor +11 more
2019Frontiers in Microbiology8 citations Open access
Semantic Scholar
Research of skin microfilariae on 160 horses from Poland, France and Spain
M. Franck, J. Colombet, C. Hugnet, J. D. de Lahitte +3 more
20067 citations
Semantic Scholar
Estimating Esox lucius (Esocidae, Esociformes) density and population structure in a large European alluvial river: the Allier (France)
J. Sauvanet, Gilles Bourdier, J. Colombet, A. Viallefont +2 more
2013Journal of Ichthyology : A Translation of Voprosy Ikhtiologii6 citations
Semantic Scholar
Trophic Conditions Influence Widespread Distribution of Aster-Like Nanoparticles Within Aquatic Environments
Maxime Fuster, Hermine Billard, M. Mandart, J. Steiger +2 more
2020Microbial Ecology5 citations Open access
Semantic Scholar

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