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M. Sardiu · SciRah

Researcher profile · Semantic Scholar

M. Sardiu

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M. Sardiu — researcher profile on SciRah

h-index: 25
Works: 60
Citations: 4,421

Most-cited papers

The CRAPome: a Contaminant Repository for Affinity Purification Mass Spectrometry Data
Dattatreya Mellacheruvu, Zachary Wright, Amber L. Couzens, Jean-Philippe Lambert +34 more
2013Nature Methods1,634 citations Open access
Semantic Scholar
Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae.
B. Zybailov, A. Mosley, M. Sardiu, Michael K. Coleman +2 more
2006Journal of Proteome Research1,067 citations
Semantic Scholar
Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics
M. Sardiu, Yong Cai, Jingji Jin, S. Swanson +4 more
2008Proceedings of the National Academy of Sciences of the United States of America240 citations Open access
Semantic Scholar
Combinatorial depletion analysis to assemble the network architecture of the SAGA and ADA chromatin remodeling complexes
Kenneth K. Lee, M. Sardiu, S. Swanson, J. Gilmore +5 more
2011Molecular Systems Biology169 citations Open access
Semantic Scholar
Delayed Correlation of mRNA and Protein Expression in Rapamycin-treated Cells and a Role for Ggc1 in Cellular Sensitivity to Rapamycin*
Marjorie Fournier, A. Paulson, Norman Pavelka, A. Mosley +9 more
2009Molecular & Cellular Proteomics165 citations Open access
Semantic Scholar
Highly Reproducible Label Free Quantitative Proteomic Analysis of RNA Polymerase Complexes*
A. Mosley, M. Sardiu, S. Pattenden, J. Workman +2 more
2010Molecular & Cellular Proteomics90 citations Open access
Semantic Scholar
The multifunctional autophagy pathway in the human malaria parasite, Plasmodium falciparum
Serena Cervantes, E. Bunnik, A. Saraf, C. M. Conner +6 more
2013Autophagy82 citations Open access
Semantic Scholar
Composition and Function of Mutant Swi/Snf Complexes
Arnob Dutta, M. Sardiu, M. Gogol, J. Gilmore +5 more
2017Cell Reports70 citations Open access
Semantic Scholar
Building Protein-Protein Interaction Networks with Proteomics and Informatics Tools*
M. Sardiu, M. Washburn
2011Journal of Biological Chemistry68 citations Open access
Semantic Scholar
Dynamic regulation and requirement for ribosomal RNA transcription during mammalian development
K. Falcon, Kristin E. N. Watt, Soma Dash, Ru-Qian Zhao +15 more
2021bioRxiv60 citations Open access
Semantic Scholar
Human Family with Sequence Similarity 60 Member A (FAM60A) Protein: a New Subunit of the Sin3 Deacetylase Complex*
Karen T. Smith, M. Sardiu, S. Martin-Brown, C. Seidel +5 more
2012Molecular & Cellular Proteomics60 citations Open access
Semantic Scholar
Dynamic and combinatorial landscape of histone modifications during the intra-erythrocytic developmental cycle of the malaria parasite
A. Saraf, Serena Cervantes, E. Bunnik, N. Ponts +8 more
2016Journal of Proteome Research57 citations Open access
Semantic Scholar
Quantitative Proteomics Demonstrates That the RNA Polymerase II Subunits Rpb4 and Rpb7 Dissociate during Transcriptional Elongation*
A. Mosley, Gerald O. Hunter, M. Sardiu, M. Smolle +3 more
2013Molecular & Cellular Proteomics54 citations Open access
Semantic Scholar
Identification of Topological Network Modules in Perturbed Protein Interaction Networks
M. Sardiu, J. Gilmore, Brad D. Groppe, L. Florens +1 more
2017Scientific Reports38 citations Open access
Semantic Scholar
Characterization of a Highly Conserved Histone Related Protein, Ydl156w, and Its Functional Associations Using Quantitative Proteomic Analyses*
J. Gilmore, M. Sardiu, Swaminathan Venkatesh, Brent Stutzman +5 more
2011Molecular & Cellular Proteomics38 citations Open access
Semantic Scholar
Determining Protein Complex Connectivity Using a Probabilistic Deletion Network Derived from Quantitative Proteomics
M. Sardiu, J. Gilmore, M. Carrozza, Bing Li +3 more
2009PLoS ONE38 citations Open access
Semantic Scholar
Topological scoring of protein interaction networks
M. Sardiu, J. Gilmore, Brad D. Groppe, Arnob Dutta +2 more
2018Nature Communications37 citations Open access
Semantic Scholar
Evaluation of clustering algorithms for protein complex and protein interaction network assembly.
M. Sardiu, L. Florens, M. Washburn
2009Journal of Proteome Research37 citations
Semantic Scholar
The WHHERE coactivator complex is required for retinoic acid-dependent regulation of embryonic symmetry
Gonçalo C. Vilhais-Neto, Marjorie Fournier, J. Plassat, M. Sardiu +6 more
2017Nature Communications34 citations Open access
Semantic Scholar
Differential complex formation via paralogs in the human Sin3 protein interaction network
Mark K. Adams, C. A. Banks, J. Thornton, M. Sardiu +4 more
2019bioRxiv30 citations Open access
Semantic Scholar
WDR76 Co-Localizes with Heterochromatin Related Proteins and Rapidly Responds to DNA Damage
J. Gilmore, M. Sardiu, Brad D. Groppe, J. Thornton +8 more
2016PLoS ONE29 citations Open access
Semantic Scholar
Role for the MED21-MED7 Hinge in Assembly of the Mediator-RNA Polymerase II Holoenzyme*
S. Sato, C. Tomomori-Sato, K. Tsai, Xiaodi Yu +7 more
2016Journal of Biological Chemistry28 citations Open access
Semantic Scholar
Suberoylanilide Hydroxamic Acid (SAHA)-Induced Dynamics of a Human Histone Deacetylase Protein Interaction Network*
M. Sardiu, Karen T. Smith, Brad D. Groppe, J. Gilmore +7 more
2014Molecular & Cellular Proteomics27 citations Open access
Semantic Scholar
Lineage specific extracellular vesicle-associated protein biomarkers for the early detection of high grade serous ovarian cancer
C. Trinidad, H. Pathak, Shibo Cheng, Shin-Cheng Tzeng +8 more
2023Scientific Reports25 citations Open access
Semantic Scholar
A systems chemoproteomic analysis of acyl-CoA/protein interaction networks
Michaella J Levy, David C. Montgomery, M. Sardiu, José L. Moñtano +9 more
2019bioRxiv25 citations Open access
Semantic Scholar
Understanding the need for digital twins’ data in patient advocacy and forecasting oncology
Hung-Ching Chang, Antony M. Gitau, Siri Kothapalli, Danny R. Welch +2 more
2023Frontiers Artif. Intell.20 citations Open access
Semantic Scholar
Synergistic anti-proliferative activity of JQ1 and GSK2801 in triple-negative breast cancer
N. Yellapu, Thuc Ly, M. Sardiu, D. Pei +3 more
2022BMC Cancer20 citations Open access
Semantic Scholar
The chromatin bound proteome of the human malaria parasite
G. Batugedara, X. Lu, A. Saraf, M. Sardiu +7 more
2020Microbial Genomics19 citations Open access
Semantic Scholar
Biochemical Reduction of the Topology of the Diverse WDR76 Protein Interactome
Gerald Dayebgadoh, M. Sardiu, L. Florens, M. Washburn
2019bioRxiv18 citations Open access
Semantic Scholar
Conserved abundance and topological features in chromatin‐remodeling protein interaction networks
M. Sardiu, J. Gilmore, Brad D. Groppe, D. Herman +7 more
2014EMBO Reports18 citations Open access
Semantic Scholar
BRK phosphorylates SMAD4 for proteasomal degradation and inhibits tumor suppressor FRK to control SNAIL, SLUG, and metastatic potential
S. Miah, C. A. Banks, Y. Ogunbolude, E. Bagu +11 more
2019Science Advances17 citations Open access
Semantic Scholar
Enriching quantitative proteomics with SIN
M. Sardiu, M. Washburn
2010Nature Biotechnology17 citations
Semantic Scholar
Differential Complex Formation via Paralogs in the Human Sin3 Protein Interaction Network
Mark K. Adams, C. A. Banks, J. Thornton, C. Kempf +10 more
2020Molecular & Cellular Proteomics13 citations Open access
Semantic Scholar
Cysteine-cysteine contact preference leads to target-focusing in protein folding.
M. Sardiu, M. Cheung, Yi-Kuo Yu
2007Biophysical Journal12 citations Open access
Semantic Scholar
VCD-induced menopause mouse model reveals reprogramming of hepatic metabolism
Roshan Kumari, Michael E. Ponte, Edziu M. Franczak, J. Prom +7 more
2024Molecular Metabolism11 citations Open access
Semantic Scholar
Score statistics of global sequence alignment from the energy distribution of a modified directed polymer and directed percolation problem.
M. Sardiu, Gelio Alves, Yi-Kuo Yu
2005Physical review. E, Statistical, nonlinear, and soft matter physics10 citations
Semantic Scholar
VCD-induced menopause mouse model reveals reprogramming of hepatic metabolism
Roshan Kumari, Michael E. Ponte, Edziu M. Franczak, J. Prom +6 more
2023bioRxiv9 citations
Semantic Scholar
Generating Topological Protein Interaction Scores and Data Visualization with TopS
M. Sardiu, L. Florens, M. Washburn
2019Methods9 citations Open access
Semantic Scholar
Acute exercise dynamically modulates the hepatic mitochondrial proteome
Colin S. McCoin, Edziu M. Franczak, Michael Washburn, M. Sardiu +1 more
2022Molecular Omics6 citations Open access
Semantic Scholar
Perturbation of BRMS1 interactome reveals pathways that impact metastasis
Rosalyn C. Zimmermann, M. Sardiu, Christa A. Manton, M. Miah +7 more
2021PLoS ONE5 citations Open access
Semantic Scholar
Identification of Stem Cells from Large Cell Populations with Topological Scoring
M. Sardiu, Andrew C. Box, J. Haug, M. Washburn
2020bioRxiv5 citations Open access
Semantic Scholar
Construction of protein interaction networks based on the label-free quantitative proteomics.
M. Sardiu, M. Washburn
2011Methods in molecular biology4 citations
Semantic Scholar
Distinct regions within SAP25 recruit O-linked glycosylation, DNA demethylation, and ubiquitin ligase and hydrolase activities to the Sin3/HDAC complex
Pratik Goswami, C. A. Banks, J. Thornton, Bethany D Bengs +3 more
2024Journal of Proteome Research3 citations Open access
Semantic Scholar
FGF2 antiproliferative effect in K-ras-driven tumor cells involves modulation of rRNA and nucleolus.
F. D. de Luna Vitorino, Michaella J Levy, Rosangela A. Mansano Wailemann, Mariana Lopes +9 more
2023Journal of Cell Science3 citations Open access
Semantic Scholar
Distinct regions within SAP25 recruit O-linked glycosylation, DNA demethylation, and ubiquitin ligase and hydrolase activities to the Sin3/HDAC complex
Pratik Goswami, C. A. Banks, J. Thornton, Bethany D Bengs +3 more
2024bioRxiv1 citations Open access
Semantic Scholar
Differences in Leukocyte Transcriptomes of Morbidly Obese Patients With High Output Heart Failure: A Pilot Study
Samantha A. Cintron, Janet D Pierce, M. Sardiu, Diane Mahoney +3 more
2023International Journal of Heart Failure1 citations Open access
Semantic Scholar
BRK Phosphorylates SMAD4 for proteasomal degradation and inhibits tumor suppressor FRK to control SNAIL, SLUG and metastatic potential
S. Miah, C. A. Banks, Y. Ogunbolude, E. Bagu +9 more
2018bioRxiv1 citations Open access
Semantic Scholar
PerSEveML: a web-based tool to identify persistent biomarker structure for rare events using an integrative machine learning approach.
Sreejata Dutta, D. Mudaranthakam, Yanming Li, M. Sardiu
2024Molecular Omics0 citations Open access
Semantic Scholar
Differential Remodeling of the BRCA1 Interactome by a Unique Minimal Clinical Truncation Mutation
Jing-Jing Chen, M. Sardiu, M. Rekowski, Jules Nde +4 more
2024bioRxiv0 citations Open access
Semantic Scholar
PerSEveML: A Web-Based Tool to Identify Persistent Biomarker Structure for Rare Events Using Integrative Machine Learning Approach
Sreejata Dutta, D. Mudaranthakam, Yanming Li, M. Sardiu
2023bioRxiv0 citations Open access
Semantic Scholar

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