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E. Agirre · SciRah

Researcher profile · Semantic Scholar

E. Agirre

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E. Agirre — researcher profile on SciRah

h-index: 23
Works: 56
Citations: 4,317

Most-cited papers

Altered human oligodendrocyte heterogeneity in multiple sclerosis
S. Jäkel, E. Agirre, A. Falcão, D. van Bruggen +6 more
2019Nature794 citations Open access
Semantic Scholar
Disease-specific oligodendrocyte lineage cells arise in multiple sclerosis
A. Falcão, D. van Bruggen, Sueli C Marques, M. Meijer +9 more
2018Nature Medicine526 citations Open access
Semantic Scholar
Spatial epigenome–transcriptome co-profiling of mammalian tissues
Di Zhang, Yan-Xiang Deng, P. Kukanja, E. Agirre +19 more
2023Nature442 citations Open access
Semantic Scholar
An Atlas of Vagal Sensory Neurons and Their Molecular Specialization
Jussi Kupari, M. Häring, E. Agirre, G. Castelo-Branco +1 more
2019Cell Reports386 citations Open access
Semantic Scholar
Control of alternative splicing through siRNA-mediated transcriptional gene silencing
Mariano Alló, V. Buggiano, J. P. Fededa, E. Petrillo +9 more
2009Nature Structural &Molecular Biology357 citations
Semantic Scholar
A lncRNA regulates alternative splicing via establishment of a splicing-specific chromatin signature
Inma Gonzalez, R. Munita, E. Agirre, Travis A. Dittmer +3 more
2015Nature Structural &Molecular Biology256 citations Open access
Semantic Scholar
Functionally Distinct Subgroups of Oligodendrocyte Precursor Cells Integrate Neural Activity and Execute Myelin Formation
Roberta Marisca, Tobias Höche, E. Agirre, L. Hoodless +4 more
2019Nature Neuroscience219 citations Open access
Semantic Scholar
RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions
A. Bonetti, F. Agostini, A. Suzuki, K. Hashimoto +25 more
2019Nature Communications153 citations Open access
Semantic Scholar
Cellular architecture of evolving neuroinflammatory lesions and multiple sclerosis pathology.
P. Kukanja, C. Langseth, Leslie A. Rubio Rodríguez-Kirby, E. Agirre +10 more
2024Cell101 citations Open access
Semantic Scholar
Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells
Mariano Alló, E. Agirre, S. Bessonov, P. Bertucci +17 more
2014Proceedings of the National Academy of Sciences of the United States of America98 citations Open access
Semantic Scholar
PAD2-Mediated Citrullination Contributes to Efficient Oligodendrocyte Differentiation and Myelination
A. Falcão, M. Meijer, A. Scaglione, P. Rinwa +13 more
2019Cell Reports96 citations Open access
Semantic Scholar
SETDB1-dependent heterochromatin stimulates alternative lengthening of telomeres
Mathilde Gauchier, Sophie Kan, Amandine Barral, Sandrine Sauzet +10 more
2019Science Advances94 citations Open access
Semantic Scholar
Quantitative characterization of cell niches in spatially resolved omics data
Sebastian Birk, Irene Bonafonte-Pardàs, Adib Miraki Feriz, Adam Boxall +11 more
2025Nature Genetics88 citations Open access
Semantic Scholar
Methods to study splicing from high-throughput RNA sequencing data.
Gael P. Alamancos, E. Agirre, E. Eyras
2013Methods in molecular biology87 citations Open access
Semantic Scholar
Epigenomic priming of immune genes implicates oligodendroglia in multiple sclerosis susceptibility
M. Meijer, E. Agirre, Mukund Kabbe, Cassandra A. van Tuijn +13 more
2022Neuron86 citations Open access
Semantic Scholar
Splicing-associated chromatin signatures: a combinatorial and position-dependent role for histone marks in splicing definition
E. Agirre, A. Oldfield, N. Bellora, A. Segelle +1 more
2021Nature Communications70 citations Open access
Semantic Scholar
snRNA-seq stratifies multiple sclerosis patients into distinct white matter glial responses.
W. Macnair, Daniela Calini, E. Agirre, J. Bryois +20 more
2024Neuron61 citations Open access
Semantic Scholar
Oligodendrocyte Intrinsic miR-27a Controls Myelination and Remyelination
A. Tripathi, Christina M. Volsko, J. P. Garcia, E. Agirre +6 more
2019Cell Reports60 citations Open access
Semantic Scholar
A chromatin code for alternative splicing involving a putative association between CTCF and HP1α proteins
E. Agirre, N. Bellora, Mariano Alló, A. Pagès +3 more
2015BMC Biology56 citations Open access
Semantic Scholar
Co-evolution of the branch site and SR proteins in eukaryotes.
Mireya Plass, E. Agirre, Diana Reyes, F. Camara +1 more
2008Trends in Genetics53 citations
Semantic Scholar
Single-cell transcriptomic analysis of oligodendrocyte lineage cells.
D. van Bruggen, E. Agirre, G. Castelo-Branco
2017Current Opinion in Neurobiology51 citations Open access
Semantic Scholar
Chromatin and alternative splicing.
Mariano Alló, I. Schor, M. J. Muñoz, M. de la Mata +4 more
2010Cold Spring Harbor Symposia on Quantitative Biology49 citations Open access
Semantic Scholar
A complex epigenome-splicing crosstalk governs epithelial-to-mesenchymal transition in metastasis and brain development
Sanjeeb Kumar Sahu, E. Agirre, M. Inayatullah, Arun Mahesh +8 more
2022Nature Cell Biology26 citations
Semantic Scholar
RADICL-seq identifies general and cell type specific principles of genome-wide RNA-chromatin interactions
A. Bonetti, F. Agostini, Ana, Mari Suzuki +28 more
202019 citations
Semantic Scholar
Distinct transcriptomic and epigenomic responses of mature oligodendrocytes during disease progression in a mouse model of multiple sclerosis
Chao Zheng, Bastien Hervé, Mandy Meijer, Leslie Ann Rubio Rodríguez-Kirby +7 more
2023bioRxiv14 citations Open access
Semantic Scholar
Nuclear role for human Argonaute-1 as an estrogen-dependent transcription coactivator
L. Gomez-Acuña, Ezequiel Nazer, S. Rodríguez-Seguí, B. Pozzi +6 more
2020Journal of Cell Biology13 citations Open access
Semantic Scholar
Disease-specific oligodendrocyte lineage cells arise in Multiple Sclerosis
A. Falcão, D. van Bruggen, Sueli C Marques, M. Meijer +9 more
201912 citations
Semantic Scholar
Databases and resources for human small non-coding RNAs
E. Agirre, E. Eyras
2011Human Genomics11 citations Open access
Semantic Scholar
Quantitative characterization of cell niches in spatial atlases
Sebastian Birk, Irene Bonafonte-Pardàs, Adib Miraki Feriz, Adam Boxall +9 more
2024bioRxiv9 citations Open access
Semantic Scholar
Single nuclei RNAseq stratifies multiple sclerosis patients into distinct white matter glial responses
W. Macnair, Daniela Calini, E. Agirre, Julien Bryois +18 more
2023bioRxiv7 citations Open access
Semantic Scholar
RADICL-seq identifies general and cell type specific principles of genome-wide RNA-chromatin interactions
A. Bonetti, F. Agostini, Ana, Mari Suzuki +28 more
20207 citations
Semantic Scholar
Single cell-resolution in situ sequencing elucidates spatial dynamics of multiple sclerosis lesion and disease evolution
C. Langseth, P. Kukanja, L. A. Rubio Rodríguez-Kirby, E. Agirre +9 more
2023bioRxiv6 citations Open access
Semantic Scholar
RADICL-seq identifies general and cell type specific principles of genome-wide RNA-chromatin interactions
A. Bonetti, F. Agostini, Ana, Mari Suzuki +28 more
20206 citations
Semantic Scholar
Single-nucleus epigenomic profiling of the adult human central nervous system unveils epigenetic memory of developmental programs
Mukund Kabbe, E. Agirre, Karl E. Carlström, Özge Dumral +18 more
2026Nature Neuroscience4 citations Open access
Semantic Scholar
Author Correction: RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions
A. Bonetti, F. Agostini, A. Suzuki, K. Hashimoto +25 more
2021Nature Communications4 citations Open access
Semantic Scholar
WITHDRAWN: Oligodendroglia as functional effectors of Multiple Sclerosis risk variants
Karl E. Carlström, E. Agirre, T. Sun, Özge Dumral +8 more
2026bioRxiv3 citations
Semantic Scholar
Focal white matter lesions drive grey matter inflammation and synapse loss
O. de Faria, Stavros Vagionitis, Andrea López-López, Michael L. Perry +26 more
2026Nature3 citations Open access
Semantic Scholar
A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis
M. Meijer, E. Agirre, Mukund Kabbe, Cassandra A. van Tuijn +7 more
2020bioRxiv3 citations Open access
Semantic Scholar
Fatty acid binding protein-8 (FABP8/PMP2) reveals molecular heterogeneity of myelin sheaths in the human CNS
Vasiliki-Ilya Gargareta, N. Mougios, E. Hahn, Sophie B. Siems +29 more
2026bioRxiv1 citations Open access
Semantic Scholar
Single-nuclei histone modification profiling of the adult human central nervous system unveils epigenetic memory of developmental programs
Mukund Kabbe, E. Agirre, Karl E. Carlström, Fabio Baldivia Pohl +13 more
2024bioRxiv1 citations Open access
Semantic Scholar
PADI2-mediated citrullination is required for efficient oligodendrocyte differentiation and myelination
A. Falcão, M. Meijer, A. Scaglione, P. Rinwa +13 more
2018bioRxiv1 citations Open access
Semantic Scholar
Multi-omics profiling of the choroid plexus reveals developmental cellular remodeling, early immune gene activation, and epithelial cell heterogeneity
M. Fernandes, Lili Andersson-Li, Eduarda Correia, Alice Vieira +11 more
2026Cell Reports0 citations Open access
Semantic Scholar
Neuronal synapses are stabilised by activity-dependent vesicular release from oligodendrocyte precursor cells
Emma Dumble, Denis Yuan, E. Agirre, Patricia Bispo +4 more
2026bioRxiv0 citations Open access
Semantic Scholar
Dual role of GABAB receptor in oligodendrocyte function and immune modulation in experimental multiple sclerosis
L. Bayón-Cordero, B. I. Ochoa-Bueno, Irene Luengas-Escuza, Rodrigo Senovilla +11 more
2025bioRxiv0 citations Open access
Semantic Scholar
Multi-omics Profiling of the Lateral Ventricle Choroid Plexus Reveals Developmental Cellular Remodeling, Early Immune Gene Activation, and a Novel Epithelial Subtype
M. Fernandes, Lili Andersson-Li, Eduarda Correia, Alice Vieira +11 more
2025bioRxiv0 citations
Semantic Scholar
TAF1-dependent transcriptional dysregulation underlies multiple sclerosis
C. Rodríguez-López, Ivó H. Hernández, José Terrón-Bautista, E. Agirre +32 more
2025bioRxiv0 citations Open access
Semantic Scholar
RADICL-seq identifies general and cell type specific principles of genome-wide RNA-chromatin interactions
A. Bonetti, F. Agostini, Ana, Mari Suzuki +28 more
20200 citations
Semantic Scholar
RADICL-seq identifies general and cell type specific principles of genome-wide RNA-chromatin interactions
A. Bonetti, F. Agostini, Ana, Mari Suzuki +28 more
20200 citations
Semantic Scholar
RADICL-seq identifies general and cell type specific principles of genome-wide RNA-chromatin interactions
A. Bonetti, F. Agostini, Ana, Mari Suzuki +28 more
20200 citations
Semantic Scholar
RADICL-seq identifies general and cell type specific principles of genome-wide RNA-chromatin interactions
A. Bonetti, F. Agostini, Ana, Mari Suzuki +28 more
20200 citations
Semantic Scholar

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