Sveinung Gundersen

Most-cited papers

1. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles

   Ieva Rauluseviciute, R. Riudavets-Puig, Romain Blanc-Mathieu, J. Castro-Mondragon +16 more

   2023Nucleic Acids Research996 citations Open access

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2. The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

   Linelle Ann L Enis Olivier Ahmed H Wendi A Dannon Madeline Abueg Afgan Allart Awan Bacon Baker Bassetti Batut, L. Abueg, E. Afgan, Olivier Allart +127 more

   2024Nucleic Acids Research902 citations Open access

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3. JASPAR 2026: expansion of transcription factor binding profiles and integration of deep learning models

   Damla Ovek Baydar, Ieva Rauluseviciute, Dina R Aronsen, Romain Blanc-Mathieu +30 more

   2025Nucleic Acids Research123 citations Open access

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4. The Genomic HyperBrowser: inferential genomics at the sequence level

   G. K. Sandve, Sveinung Gundersen, H. Rydbeck, I. Glad +10 more

   2010Genome Biology96 citations Open access

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5. The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires

   Milena Pavlović, L. Scheffer, K. Motwani, C. Kanduri +38 more

   2021Nature Machine Intelligence82 citations Open access

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6. Colocalization analyses of genomic elements: approaches, recommendations and challenges

   C. Kanduri, C. Bock, Sveinung Gundersen, E. Hovig +1 more

   2018Bioinform.61 citations Open access

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7. HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization

   Jonas Paulsen, G. K. Sandve, Sveinung Gundersen, T. Lien +2 more

   2014Bioinform.42 citations Open access

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8. The Genomic HyperBrowser: an analysis web server for genome-scale data

   G. K. Sandve, Sveinung Gundersen, Morten Johansen, I. Glad +17 more

   2013Nucleic Acids Res.34 citations Open access

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9. Identifying elemental genomic track types and representing them uniformly

   Sveinung Gundersen, M. Kalaš, O. Abul, A. Frigessi +2 more

   2011BMC Bioinformatics30 citations Open access

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10. c-Myb Binding Sites in Haematopoietic Chromatin Landscapes

    M. Bengtsen, Kjetil Klepper, Sveinung Gundersen, I. Cuervo +5 more

    2015PLoS ONE29 citations Open access

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11. Coloc-stats: a unified web interface to perform colocalization analysis of genomic features

    Boris Simovski, C. Kanduri, Sveinung Gundersen, Dmytro Titov +11 more

    2018Nucleic Acids Res.24 citations Open access

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12. GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome

    Boris Simovski, D. Vodák, Sveinung Gundersen, D. Domanska +21 more

    2016bioRxiv21 citations Open access

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13. Norwegian e-Infrastructure for Life Sciences (NeLS)

    Kidane M. Tekle, Sveinung Gundersen, Kjetil Klepper, L. Bongo +18 more

    2018F1000Research16 citations Open access

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14. Comprehensive interrogation of gene lists from genome‐scale cancer screens with oncoEnrichR

    S. Nakken, Sveinung Gundersen, F. Bernal, Dimitris Polychronopoulos +2 more

    2023International Journal of Cancer9 citations Open access

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15. Recommendations for the FAIRification of genomic track metadata

    Sveinung Gundersen, Sanjay Boddu, S. Capella-Gutiérrez, F. Drabløs +6 more

    2021F1000Research9 citations Open access

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16. The differential disease regulome

    G. K. Sandve, Sveinung Gundersen, H. Rydbeck, I. Glad +11 more

    2011BMC Genomics9 citations Open access

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17. Identification of Transcripts with Shared Roles in the Pathogenesis of Postmenopausal Osteoporosis and Cardiovascular Disease

    S. Reppe, Sveinung Gundersen, G. K. Sandve, Yunpeng Wang +6 more

    2024International Journal of Molecular Sciences6 citations Open access

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18. Taming the reference genome jungle: the refget sequence collection standard

    Donald R. Campbell, Tim Cezard, Sveinung Gundersen, Andrew D. Yates +8 more

    2025bioRxiv3 citations Open access

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19. hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks

    Sumana Kalyanasundaram, Y. Lefol, Sveinung Gundersen, Torbjørn Rognes +5 more

    2023PLoS ONE2 citations Open access

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20. OncoEnrichR: cancer-dedicated gene set interpretation

    S. Nakken, Sveinung Gundersen, Fabian L. M. Bernal, D. Polychronopoulos +19 more

    20212 citations

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21. World First Riserless Light Well Intervention (RLWI) Technique To Mill and Clean Hard-Packed Debris, and Then Pull a Bridge Plug From a Live Subsea Well Using Electric Wireline

    Quentin Delot, Tommy Eikeland, Sveinung Gundersen, Normann Skeie

    20122 citations

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22. BioXSD — a data model for sequences, alignments, features, measured and inferred values

    M. Kalaš, Sveinung Gundersen, L. Kajan, J. Ison +5 more

    20151 citations Open access

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23. BioXSD: a data model for sequences, alignments, features and measurements

    M. Kalaš, Sveinung Gundersen, L. Kajan, J. Ison +5 more

    20141 citations

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24. Representation and integrated analysis of heterogeneous genomic datasets

    Sveinung Gundersen

    20141 citations

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25. Abstract 2090: Comprehensive interrogation of gene lists from genome-scale cancer screens with oncoEnrichR

    S. Nakken, Sveinung Gundersen, Fabian L. M. Bernal, D. Polychronopoulos +2 more

    2023Cancer Research0 citations

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26. TrackFind – FAIR search of genomic tracks

    Dmytro Titov, Sveinung Gundersen, Radmila Kompova, S. Capella-Gutiérrez +5 more

    20190 citations Open access

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27. The GTrack ecosystem - expressive file formats for analysis of genomic track data

    Sveinung Gundersen, M. Kalaš, Boris Simovski, Brynjar Rognved +7 more

    20180 citations Open access

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28. Integrative analysis of hundreds of datasets in Galaxy

    G. K. Sandve, Boris Simovski, Sveinung Gundersen, D. Domanska +1 more

    20170 citations Open access

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29. BioXSD | BioJSON | BioYAML – towards unified formats for sequences, alignments, features, and annotations

    M. Kalaš, Sveinung Gundersen, L. Kajan, H. Ménager +6 more

    20160 citations Open access

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30. GSuite HyperBrowser: Integrative genomic analyses across cells and epigenetic factors using Galaxy

    Boris Simovski, Sveinung Gundersen, D. Vodák, A. Azab +3 more

    20160 citations Open access

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31. BioXSD: an XML Schema for sequence data, features, alignments, and identifiers

    M. Kalaš, E. Karosiene, L. Kajan, Sveinung Gundersen +5 more

    20130 citations

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32. BioXSD – the XML schema for basic bioinformatics data

    M. Kalaš, P. Puntervoll, E. Karosiene, Christophe Blanchet +4 more

    20120 citations

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33. FAIRification of Genomic Annotations Working Group

    Sveinung Gundersen, A. Bernasconi, Nathan C. Sheffield, A. Wright +11 more

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