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R. Cartwright · SciRah

Researcher profile · Semantic Scholar

R. Cartwright

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R. Cartwright — researcher profile on SciRah

h-index: 20
Works: 51
Citations: 2,864

Most-cited papers

Comparative population genomics of maize domestication and improvement
M. Hufford, Xun Xu, J. van Heerwaarden, T. Pyhäjärvi +21 more
2012Nature Genetics873 citations Open access
Semantic Scholar
Variation in genome-wide mutation rates within and between human families
D. Conrad, Jonathan E. M. Keebler, M. DePristo, S. Lindsay +13 more
2011Nature Genetics605 citations Open access
Semantic Scholar
DeNovoGear: de novo indel and point mutation discovery and phasing
Avinash Ramu, M. J. Noordam, R. Schwartz, Arthur Wuster +3 more
2013Nature Methods183 citations Open access
Semantic Scholar
A community-maintained standard library of population genetic models
J. Adrion, Christopher B. Cole, N. Dukler, Jared G. Galloway +25 more
2019bioRxiv180 citations Open access
Semantic Scholar
The role of gene flow in rapid and repeated evolution of cave related traits in Mexican tetra, Astyanax mexicanus
A. Herman, Yaniv J. Brandvain, James Weagley, W. Jeffery +15 more
2018bioRxiv172 citations Open access
Semantic Scholar
Experimental evolution reveals an effective avenue to release catabolite repression via mutations in XylR
C. Sievert, Lizbeth M. Nieves, Larry A. Panyon, Taylor Loeffler +3 more
2017Proceedings of the National Academy of Sciences of the United States of America82 citations Open access
Semantic Scholar
Problems and solutions for estimating indel rates and length distributions.
R. Cartwright
2009Molecular biology and evolution79 citations Open access
Semantic Scholar
Phylogenomic Reconstruction Supports Supercontinent Origins for Leishmania
K. Harkins, R. Schwartz, R. Cartwright, A. Stone
2015bioRxiv61 citations Open access
Semantic Scholar
Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations
M. E. Lauterbur, M. I. A. Cavassim, Ariella L. Gladstein, Graham Gower +38 more
2023bioRxiv59 citations Open access
Semantic Scholar
A phylogenomic approach reveals a low somatic mutation rate in a long-lived plant
A. J. Orr, A. Padovan, D. Kainer, C. Külheim +8 more
2019bioRxiv58 citations Open access
Semantic Scholar
Low Base-Substitution Mutation Rate in the Germline Genome of the Ciliate Tetrahymena thermophila
Hongan Long, D. J. Winter, Allan Y.-C. Chang, Way Sung +6 more
2015bioRxiv45 citations Open access
Semantic Scholar
The gut microbiome of exudivorous marmosets in the wild and captivity
Joanna Malukiewicz, R. Cartwright, Jorge Abdala Dergam, Claudia S. Igayara +13 more
2019Scientific Reports42 citations Open access
Semantic Scholar
A composite genome approach to identify phylogenetically informative data from next-generation sequencing
R. Schwartz, K. Harkins, A. Stone, R. Cartwright
2013BMC Bioinformatics31 citations Open access
Semantic Scholar
A Toxic Mutator and Selection Alternative to the Non-Mendelian RNA Cache Hypothesis for hothead Reversion
L. Comai, R. Cartwright
2005The Plant Cell Online30 citations
Semantic Scholar
PICS-Ord: unlimited coding of ambiguous regions by pairwise identity and cost scores ordination
R. Lücking, B. Hodkinson, A. Stamatakis, R. Cartwright
2011BMC Bioinformatics27 citations Open access
Semantic Scholar
A Probabilistic Model for Indel Evolution: Differentiating Insertions from Deletions
Gil Loewenthal, Dana Rapoport, O. Avram, Asher Moshe +7 more
2020bioRxiv25 citations Open access
Semantic Scholar
The importance of selection in the evolution of blindness in cavefish
R. Cartwright, R. Schwartz, Alexandra L. Merry, M. M. Howell
2017BMC Evolutionary Biology25 citations Open access
Semantic Scholar
Neutral evolution of robustness in Drosophila microRNA precursors.
Nicholas Price, R. Cartwright, N. Sabath, D. Graur +1 more
2011Molecular biology and evolution23 citations Open access
Semantic Scholar
Ngila: global pairwise alignments with logarithmic and affine gap costs
R. Cartwright
2007Bioinform.22 citations Open access
Semantic Scholar
Frequency-Dependent Selection With Dominance: A Window Onto the Behavior of the Mean Fitness
M. Asmussen, R. Cartwright, H. Spencer
2004Genetics21 citations Open access
Semantic Scholar
Genomic skimming and nanopore sequencing uncover cryptic hybridization in one of world’s most threatened primates
Joanna Malukiewicz, R. Cartwright, Jorge Abdala Dergam, Claudia S. Igayara +11 more
2021Scientific Reports20 citations Open access
Semantic Scholar
Estimating error models for whole genome sequencing using mixtures of Dirichlet-multinomial distributions
Steven H. Wu, R. Schwartz, D. J. Winter, D. Conrad +1 more
2015bioRxiv18 citations Open access
Semantic Scholar
A Family-Based Probabilistic Method for Capturing De Novo Mutations from High-Throughput Short-Read Sequencing Data
R. Cartwright, J. Hussin, Jonathan E. M. Keebler, Eric A. Stone +1 more
2012Statistical Applications in Genetics and Molecular Biology18 citations Open access
Semantic Scholar
The first steps toward a global pandemic: Reconstructing the demographic history of parasite host switches in its native range
M. Techer, John M. K. Roberts, R. Cartwright, Alexander S. Mikheyev
2020bioRxiv17 citations Open access
Semantic Scholar
Antagonism between local dispersal and self-incompatibility systems in a continuous plant population
R. Cartwright
2009Molecular Ecology17 citations Open access
Semantic Scholar
accuMUlate: A mutation caller designed for mutation accumulation experiments
D. J. Winter, Steven H. Wu, Abigail A. Howell, Ricardo B. R. Azevedo +2 more
2017bioRxiv15 citations Open access
Semantic Scholar
Consortium, G.P A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073
D. Altshuler, A. Cox, J. Herrero, D. Nickerson +356 more
201015 citations Open access
Semantic Scholar
Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa
Joanna Malukiewicz, R. Cartwright, N. Curi, Jorge Abdala Dergam +13 more
2020BMC Genomics14 citations Open access
Semantic Scholar
Inferring Rates and Length-Distributions of Indels Using Approximate Bayesian Computation
E. Levy Karin, Dafna Shkedy, H. Ashkenazy, R. Cartwright +1 more
2017Genome Biology and Evolution12 citations Open access
Semantic Scholar
Equations of the End: Teaching Mathematical Modeling Using the Zombie Apocalypse
E. Lofgren, K. M. Collins, T. Smith, R. Cartwright
2016Journal of Microbiology & Biology Education12 citations Open access
Semantic Scholar
Parallel experimental evolution reveals a novel repressive control of GalP on xylose fermentation in Escherichia coli
G. Kurgan, C. Sievert, Andrew D. Flores, A. Schneider +7 more
2019Biotechnology and Bioengineering10 citations Open access
Semantic Scholar
SpartaABC: a web server to simulate sequences with indel parameters inferred using an approximate Bayesian computation algorithm
H. Ashkenazy, E. Levy Karin, Zach Mertens, R. Cartwright +1 more
2017Nucleic Acids Res.9 citations Open access
Semantic Scholar
History can matter: non-Markovian behavior of ancestral lineages.
R. Cartwright, N. Lartillot, J. Thorne
2011Systematic Biology9 citations Open access
Semantic Scholar
The multiple personalities of Watson and Crick strands
R. Cartwright, D. Graur
2011Biology Direct9 citations Open access
Semantic Scholar
The effect of the dispersal kernel on isolation-by-distance in a continuous population
Tara N. Furstenau, R. Cartwright
2015PeerJ8 citations Open access
Semantic Scholar
Inferring Indel Parameters using a Simulation-based Approach
E. Levy Karin, Avigayel Rabin, H. Ashkenazy, Dafna Shkedy +3 more
2015Genome Biology and Evolution8 citations Open access
Semantic Scholar
The Gut Microbiome of Exudivorous Wild and non-Wild Marmosets
Joanna Malukiewicz, R. Cartwright, Jorge Abdala Dergam, Claudia S. Igayara +16 more
20214 citations
Semantic Scholar
The impact of self-incompatibility systems on the prevention of biparental inbreeding
Tara N. Furstenau, R. Cartwright
2017PeerJ2 citations Open access
Semantic Scholar
SISRS: SNP Identification from Short Read Sequences
R. Schwartz, K. Harkins, A. Stone, R. Cartwright
20132 citations
Semantic Scholar
Bards, Poets, and Cliques: Frequency-Dependent Selection and the Evolution of Language Genes
R. Cartwright
2010Bulletin of Mathematical Biology2 citations Open access
Semantic Scholar
Strong Episodic Selection for Natural Competence for Transformation Due to Host-Pathogen Dynamics
Nathan D. Palmer, R. Cartwright
2016bioRxiv1 citations Open access
Semantic Scholar
A community-maintained standard library of 1 population genetic models 2
J. Adrion, Christopher B. Cole, N. Dukler, G. Jared +32 more
20200 citations
Semantic Scholar
Environment on the Gut Microbiome of Callithrix
Joanna Malukiewicz, R. Cartwright, Jorge Abdala Dergam, Claudia S. Igayara +14 more
20190 citations
Semantic Scholar
Biotechnology and Bioengineering
G. Kurgan, C. Sievert, Andrew D. Flores, A. Schneider +7 more
20190 citations
Semantic Scholar
The role of self-incompatibility systems in the prevention of bi-parental inbreeding
Tara N. Furstenau, R. Cartwright
20170 citations Open access
Semantic Scholar
Experimental evolution reveals a novel avenue to release catabolite repression via mutations in XylR
C. Sievert, Lizbeth M. Nieves, Larry A. Panyon, Taylor Loeffler +3 more
2017bioRxiv0 citations Open access
Semantic Scholar
Genetic manipulations to increase xylose utilization
R. Cartwright, Xuan Wang
20150 citations
Semantic Scholar
Strong Selection is Necessary for Evolution of Blindness in Cave Dwellers
R. Cartwright, R. Schwartz, Alexandra L. Merry, M. M. Howell
2015bioRxiv0 citations Open access
Semantic Scholar
Saccharomyces cerevisiae , Schizosaccharomyces pombe , Paramecium tetraurelia , Dictyostelium discoideum , and Chlamydomonas reinhardtii
Hon-Gan Long, D. J. Winter, Allan, Y.-C. Chang +7 more
20150 citations
Semantic Scholar
A novel method to model read counts in genomic data to reduce false posi-1 tive identification of heterozygotes 2
Steven H. Wu, R. Schwartz, D. J. Winter, Donald F. Conrad +1 more
20150 citations
Semantic Scholar

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