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Qin-Hu Zhang · SciRah

Researcher profile · Semantic Scholar

Qin-Hu Zhang

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Qin-Hu Zhang — researcher profile on SciRah

h-index: 16
Works: 68
Citations: 860

Most-cited papers

High-Order Convolutional Neural Network Architecture for Predicting DNA-Protein Binding Sites
Qin-Hu Zhang, Lin Zhu, De-Shuang Huang
2019IEEE/ACM Transactions on Computational Biology & Bioinformatics79 citations
Semantic Scholar
A survey on deep learning in DNA/RNA motif mining
Ying He, Zhen Shen, Qin-Hu Zhang, Si-Guo Wang +1 more
2020Briefings Bioinform.78 citations Open access
Semantic Scholar
Modeling in-vivo protein-DNA binding by combining multiple-instance learning with a hybrid deep neural network
Qin-Hu Zhang, Zhen Shen, De-Shuang Huang
2019Scientific Reports62 citations Open access
Semantic Scholar
Predicting transcription factor binding sites using DNA shape features based on shared hybrid deep learning architecture
Si-Guo Wang, Qin-Hu Zhang, Zhen Shen, Ying He +3 more
2021Molecular Therapy: Nucleic Acids59 citations Open access
Semantic Scholar
Weakly-Supervised Convolutional Neural Network Architecture for Predicting Protein-DNA Binding
Qin-Hu Zhang, Lin Zhu, Wen-Zheng Bao, De-Shuang Huang
2020IEEE/ACM Transactions on Computational Biology & Bioinformatics58 citations
Semantic Scholar
Predicting in-vitro Transcription Factor Binding Sites Using DNA Sequence + Shape
Qin-Hu Zhang, Zhen Shen, De-Shuang Huang
2019IEEE/ACM Transactions on Computational Biology & Bioinformatics54 citations
Semantic Scholar
scMGATGRN: a multiview graph attention network–based method for inferring gene regulatory networks from single-cell transcriptomic data
Lin Yuan, Ling Zhao, Yu-Feng Jiang, Zhen Shen +4 more
2024Briefings Bioinform.47 citations Open access
Semantic Scholar
scRGCL: a cell type annotation method for single-cell RNA-seq data using residual graph convolutional neural network with contrastive learning
Lin Yuan, Shengguo Sun, Yu-Feng Jiang, Qin-Hu Zhang +3 more
2024Briefings Bioinform.43 citations Open access
Semantic Scholar
Locating transcription factor binding sites by fully convolutional neural network
Qin-Hu Zhang, Si-Guo Wang, Zhanheng Chen, Ying He +2 more
2021Briefings Bioinform.42 citations Open access
Semantic Scholar
A Deep Learning Model for RNA-Protein Binding Preference Prediction Based on Hierarchical LSTM and Attention Network
Zhen Shen, Qin-Hu Zhang, Kyungsook Han, De-Shuang Huang
2020IEEE/ACM Transactions on Computational Biology & Bioinformatics41 citations
Semantic Scholar
Graph pooling for graph-level representation learning: a survey
Zhi-Peng Li, Si-Guo Wang, Qin-Hu Zhang, Yi-Jie Pan +5 more
2024Artificial Intelligence Review34 citations Open access
Semantic Scholar
iCircDA-NEAE: Accelerated attribute network embedding and dynamic convolutional autoencoder for circRNA-disease associations prediction
Lin Yuan, Jia-Wang Zhao, Zhen Shen, Qin-Hu Zhang +3 more
2023PLoS Comput. Biol.24 citations Open access
Semantic Scholar
Base-resolution prediction of transcription factor binding signals by a deep learning framework
Qin-Hu Zhang, Ying He, Si-Guo Wang, Zhanheng Chen +4 more
2021bioRxiv23 citations Open access
Semantic Scholar
iCRBP-LKHA: Large convolutional kernel and hybrid channel-spatial attention for identifying circRNA-RBP interaction sites
Lin Yuan, Ling Zhao, Jinling Lai, Yu-Feng Jiang +4 more
2024PLoS Comput. Biol.19 citations Open access
Semantic Scholar
DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes
Si-Guo Wang, Qin-Hu Zhang, Ying He, Zhen Cui +3 more
2022PLoS Comput. Biol.16 citations Open access
Semantic Scholar
Multi-Scale Capsule Network for Predicting DNA-Protein Binding Sites
Qin-Hu Zhang, Wen-Bo Yu, Kyungsook Han, A. Nandi +1 more
2020IEEE/ACM Transactions on Computational Biology & Bioinformatics16 citations
Semantic Scholar
Identification of ferroptosis-related lncRNAs for predicting prognosis and immunotherapy response in non-small cell lung cancer
Lin Yuan, Shengguo Sun, Qin-Hu Zhang, Hai-tao Li +6 more
2024Future generations computer systems15 citations
Semantic Scholar
Prediction of Back-splicing sites for CircRNA formation based on convolutional neural networks
Zhen Shen, Yan-Ling Shao, Wei Liu, Qin-Hu Zhang +1 more
2022BMC Genomics15 citations Open access
Semantic Scholar
Computational prediction and characterization of cell-type-specific and shared binding sites
Qin-Hu Zhang, Peng-Rui Teng, Si-Guo Wang, Ying He +6 more
2022bioRxiv13 citations Open access
Semantic Scholar
A comparative study of Cd(ii) adsorption on calcined raw attapulgite and calcined aluminium hydroxide-modified attapulgites in aqueous solution
Qin-Hu Zhang, Run Chu, Yuzhen Wei, Li-Qun Cai
2022RSC Advances12 citations Open access
Semantic Scholar
Cross‐Species Prediction of Transcription Factor Binding by Adversarial Training of a Novel Nucleotide‐Level Deep Neural Network
Qin-Hu Zhang, Si-Guo Wang, Zhi-Peng Li, Yi-Jie Pan +1 more
2024bioRxiv10 citations Open access
Semantic Scholar
DeepTPpred: A Deep Learning Approach With Matrix Factorization for Predicting Therapeutic Peptides by Integrating Length Information
Zhen Cui, Si-Guo Wang, Ying He, Zhanheng Chen +1 more
2023IEEE journal of biomedical and health informatics10 citations
Semantic Scholar
Hierarchical Multiview Top-k Pooling With Deep-Q-Networks
Zhi-Peng Li, Hai-Long Su, Yong Wu, Qin-Hu Zhang +4 more
2024IEEE Transactions on Artificial Intelligence9 citations
Semantic Scholar
Lightweight Traffic Sign Recognition Model Based on Dynamic Feature Extraction
Yi-Yuan Ge, Ke Niu, Zhi-Hao Chen, Qin-Hu Zhang
2023International Conference on Applied Informatics9 citations
Semantic Scholar
Predicting the Sequence Specificities of DNA-Binding Proteins by DNA Fine-Tuned Language Model With Decaying Learning Rates
Ying He, De-Sheng Huang, Qin-Hu Zhang, Si-Guo Wang +3 more
2022IEEE/ACM Transactions on Computational Biology & Bioinformatics8 citations
Semantic Scholar
In silico prediction methods of self-interacting proteins: an empirical and academic survey
Zhanheng Chen, Zhuhong You, Qin-Hu Zhang, Zhen-Hao Guo +2 more
2022Frontiers of Computer Science7 citations
Semantic Scholar
FCNGRU: Locating Transcription Factor Binding Sites by Combing Fully Convolutional Neural Network With Gated Recurrent Unit
Si-Guo Wang, Ying He, Zhanheng Chen, Qin-Hu Zhang
2021IEEE journal of biomedical and health informatics7 citations
Semantic Scholar
Predicting In-Vitro DNA-Protein Binding With a Spatially Aligned Fusion of Sequence and Shape
Qin-Hu Zhang, Yindong Zhang, Si-Guo Wang, Zhanheng Chen +3 more
2021IEEE/ACM Transactions on Computational Biology & Bioinformatics7 citations
Semantic Scholar
RMSCNN: A Random Multi-Scale Convolutional Neural Network for Marine Microbial Bacteriocins Identification
Zhen Cui, Zhanheng Chen, Qin-Hu Zhang, V. Gribova +2 more
2021IEEE/ACM Transactions on Computational Biology & Bioinformatics7 citations
Semantic Scholar
Motif Discovery via Convolutional Networks with K-mer Embedding
Dailun Wang, Qin-Hu Zhang, Changan Yuan, Xiao Qin +2 more
2019International Conference on Intelligent Computing7 citations
Semantic Scholar
scCorrector: a robust method for integrating multi-study single-cell data
Zhen-Hao Guo, Yanbin Wang, Si-Guo Wang, Qin-Hu Zhang +1 more
2024Briefings Bioinform.5 citations Open access
Semantic Scholar
MV-CVIB: a microbiome-based multi-view convolutional variational information bottleneck for predicting metastatic colorectal cancer
Zhen Cui, Yan Wu, Qin-Hu Zhang, Si-Guo Wang +2 more
2023Frontiers in Microbiology5 citations Open access
Semantic Scholar
Nucleotide-level prediction of CircRNA-protein binding based on fully convolutional neural network
Zhen Shen, Wei Liu, ShuJun Zhao, Qin-Hu Zhang +2 more
2023Frontiers in Genetics5 citations Open access
Semantic Scholar
Dynamic Link Prediction for New Nodes in Temporal Graph Networks
Xiao-Bo Zhu, Yan Wu, Qin-Hu Zhang, Zhanheng Chen +1 more
2023IEEE International Joint Conference on Neural Network4 citations Open access
Semantic Scholar
A brief survey of deep learning-based models for CircRNA-protein binding sites prediction
Zhen Shen, Lin Yuan, Wen-Zheng Bao, Si-Guo Wang +2 more
2025Neurocomputing3 citations Open access
Semantic Scholar
A New Method Combining DNA Shape Features to Improve the Prediction Accuracy of Transcription Factor Binding Sites
Si-Guo Wang, Zhen Shen, Ying He, Qin-Hu Zhang +4 more
2020International Conference on Intelligent Computing3 citations
Semantic Scholar
Predicting TF-DNA Binding Motifs from ChIP-seq Datasets Using the Bag-Based Classifier Combined With a Multi-Fold Learning Scheme
Qin-Hu Zhang, Dailun Wang, Kyungsook Han, De-Shuang Huang
2020IEEE/ACM Transactions on Computational Biology & Bioinformatics3 citations
Semantic Scholar
scInterpreter: a knowledge-regularized generative model for interpretably integrating scRNA-seq data
Zhen-Hao Guo, Yan Wu, Si-Guo Wang, Qin-Hu Zhang +3 more
2023BMC Bioinformatics2 citations Open access
Semantic Scholar
Graph transformers for graph-level representation learning in the foundation model era: Taxonomy, generalization, trustworthiness, and benchmarks
Zhi-Peng Li, Chi Ma, Qin-Hu Zhang, Meng Xing +3 more
2026Neurocomputing1 citations
Semantic Scholar
A scalable computational framework for predicting gene expression from candidate cis-regulatory elements
Qin-Hu Zhang, Si-Guo Wang, Zhi-Peng Li, Wen-Zheng Bao +2 more
2025bioRxiv1 citations Open access
Semantic Scholar
Treatment effect of rainwater by intermittent aeration coupled with polyurethane biological sponge filler in in-situ rainwater quality improvement stage
Xiaoni Yang, Hao Yang, Xiaomei Sun, Qin-Hu Zhang
2025Desalination and Water Treatment1 citations Open access
Semantic Scholar
NPENN: A Noise Perturbation Ensemble Neural Network for Microbiome Disease Phenotype Prediction
Zhen Cui, Yan Wu, Qin-Hu Zhang, Si-Guo Wang +1 more
2025IEEE journal of biomedical and health informatics1 citations
Semantic Scholar
RGCN-BA: relational graph convolutional network with batch awareness for single-cell RNA sequencing clustering
Yueyue Wang, Peng-Rui Teng, Zhe-Yu Wu, Yu-Na Zhang +3 more
2025Briefings Bioinform.1 citations Open access
Semantic Scholar
Advanced Intelligent Computing Technology and Applications: 21st International Conference, ICIC 2025, Ningbo, China, July 26–29, 2025, Proceedings, Part II
De-Shuang Huang, Hai-Ming Chen, Bo Li, Qin-Hu Zhang
2025International Conference on Intelligent Computing1 citations
Semantic Scholar
Domain Adaptation for Semantic Segmentation of Cataract Surgical Images Based on Masked Image Consistency
Yuzhu Zhang, Yijie Pan, Ming-Yang Ou, Guanghui Gong +3 more
2024International Conference on Applied Informatics1 citations
Semantic Scholar
GraphLooper: predicting chromatin loops based on hierarchical multi-view graph pooling method
Si-Guo Wang, Zhi-Peng Li, Hailin Feng, Zhen Cui +6 more
2026Briefings Bioinform.0 citations Open access
Semantic Scholar
MambaSSM: efficient segmentation of brain structures in anisotropic 3D EM images via state-space models
Minjie Liu, Laifu Fang, Qin-Hu Zhang, Hong-Yu Yang
2026Frontiers in Neuroscience0 citations
Semantic Scholar
Collaborative Graph Agents for LLM-Based Graph Reasoning
Zhipeng Li, Jin-Di Wang, Fei Wang, Meng Xing +3 more
2026International Conference on Intelligent Computing0 citations
Semantic Scholar
Hierarchical refinements of cis-regulatory inputs improve scalable gene expression prediction
Qin-Hu Zhang, Meng Xing, Qi Liao, Zhi-Peng Li +1 more
2026bioRxiv0 citations Open access
Semantic Scholar
A systematic single-cell analysis of enhancer RNAs across human and mouse
Hao Rong, He-Ting Liu, Yan-Guo Li, Xiu-Chong Yu +15 more
2026Nucleic Acids Research0 citations Open access
Semantic Scholar

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