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Yukihiro Yabuta · SciRah

Researcher profile · Semantic Scholar

Yukihiro Yabuta

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Yukihiro Yabuta — researcher profile on SciRah

h-index: 38
Works: 70
Citations: 7,481

Most-cited papers

Critical function of Prdm14 for the establishment of the germ cell lineage in mice
M. Yamaji, Yoshiyuki Seki, K. Kurimoto, Yukihiro Yabuta +5 more
2008Nature Genetics590 citations
Semantic Scholar
Robust In Vitro Induction of Human Germ Cell Fate from Pluripotent Stem Cells.
Kotaro Sasaki, Shihori Yokobayashi, Tomonori Nakamura, I. Okamoto +17 more
2015Cell Stem Cell501 citations Open access
Semantic Scholar
A developmental coordinate of pluripotency among mice, monkeys and humans
Tomonori Nakamura, I. Okamoto, Kotaro Sasaki, Yukihiro Yabuta +6 more
2016Nature480 citations
Semantic Scholar
Cellular dynamics associated with the genome-wide epigenetic reprogramming in migrating primordial germ cells in mice
Yoshiyuki Seki, M. Yamaji, Yukihiro Yabuta, Mitsue Sano +6 more
2007Development463 citations Open access
Semantic Scholar
An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis
K. Kurimoto, Yukihiro Yabuta, Y. Ohinata, Yukiko Ono +4 more
2006Nucleic Acids Research421 citations Open access
Semantic Scholar
Complex genome-wide transcription dynamics orchestrated by Blimp1 for the specification of the germ cell lineage in mice.
K. Kurimoto, Yukihiro Yabuta, Y. Ohinata, Mayo Shigeta +2 more
2008Genes & Development356 citations Open access
Semantic Scholar
Induction of mouse germ-cell fate by transcription factors in vitro
Fumio Nakaki, K. Hayashi, H. Ohta, K. Kurimoto +2 more
2013Nature309 citations
Semantic Scholar
Gene Expression Dynamics During Germline Specification in Mice Identified by Quantitative Single-Cell Gene Expression Profiling1
Yukihiro Yabuta, K. Kurimoto, Y. Ohinata, Yoshiyuki Seki +1 more
2006Biology of Reproduction295 citations
Semantic Scholar
PRDM14 ensures naive pluripotency through dual regulation of signaling and epigenetic pathways in mouse embryonic stem cells.
M. Yamaji, Jun Ueda, K. Hayashi, H. Ohta +6 more
2013Cell Stem Cell293 citations Open access
Semantic Scholar
The Germ Cell Fate of Cynomolgus Monkeys Is Specified in the Nascent Amnion.
Kotaro Sasaki, Tomonori Nakamura, I. Okamoto, Yukihiro Yabuta +8 more
2016Developmental Cell283 citations Open access
Semantic Scholar
Generation of human oogonia from induced pluripotent stem cells in vitro
C. Yamashiro, Kotaro Sasaki, Yukihiro Yabuta, Yoji Kojima +9 more
2018Science279 citations Open access
Semantic Scholar
A mesodermal factor, T, specifies mouse germ cell fate by directly activating germline determinants.
Shinya Aramaki, K. Hayashi, K. Kurimoto, H. Ohta +7 more
2013Developmental Cell235 citations Open access
Semantic Scholar
Quantitative Dynamics of Chromatin Remodeling during Germ Cell Specification from Mouse Embryonic Stem Cells.
K. Kurimoto, Yukihiro Yabuta, K. Hayashi, H. Ohta +9 more
2015Cell Stem Cell182 citations Open access
Semantic Scholar
Global single-cell cDNA amplification to provide a template for representative high-density oligonucleotide microarray analysis
K. Kurimoto, Yukihiro Yabuta, Y. Ohinata, Mitinori Saitou
2007Nature Protocols182 citations
Semantic Scholar
Evolutionarily Distinctive Transcriptional and Signaling Programs Drive Human Germ Cell Lineage Specification from Pluripotent Stem Cells.
Yoji Kojima, Kotaro Sasaki, Shihori Yokobayashi, Y. Sakai +8 more
2017Cell Stem Cell172 citations Open access
Semantic Scholar
TDRD5 is required for retrotransposon silencing, chromatoid body assembly, and spermiogenesis in mice
Yukihiro Yabuta, H. Ohta, T. Abe, K. Kurimoto +2 more
2011Journal of Cell Biology161 citations Open access
Semantic Scholar
In Vitro Derivation and Propagation of Spermatogonial Stem Cell Activity from Mouse Pluripotent Stem Cells.
Yukiko Ishikura, Yukihiro Yabuta, H. Ohta, K. Hayashi +7 more
2016Cell Reports147 citations Open access
Semantic Scholar
Conditional knockdown of Nanog induces apoptotic cell death in mouse migrating primordial germ cells
Shinpei Yamaguchi, K. Kurimoto, Yukihiro Yabuta, H. Sasaki +3 more
2009Development138 citations
Semantic Scholar
In vitro reconstitution of the whole male germ-cell development from mouse pluripotent stem cells.
Yukiko Ishikura, H. Ohta, Takuya Sato, Yusuke Murase +7 more
2021Cell Stem Cell134 citations Open access
Semantic Scholar
Bone morphogenetic protein and retinoic acid synergistically specify female germ‐cell fate in mice
H. Miyauchi, H. Ohta, So I. Nagaoka, Fumio Nakaki +6 more
2017EMBO Journal125 citations Open access
Semantic Scholar
Global Landscape and Regulatory Principles of DNA Methylation Reprogramming for Germ Cell Specification by Mouse Pluripotent Stem Cells.
K. Shirane, K. Kurimoto, Yukihiro Yabuta, M. Yamaji +6 more
2016Developmental Cell120 citations Open access
Semantic Scholar
SC3-seq: a method for highly parallel and quantitative measurement of single-cell gene expression
Tomonori Nakamura, Yukihiro Yabuta, I. Okamoto, Shinya Aramaki +6 more
2015Nucleic Acids Research117 citations Open access
Semantic Scholar
Tsix RNA and the germline factor, PRDM14, link X-reactivation and stem cell reprogramming
Bernhard Payer, Michael H. Rosenberg, M. Yamaji, Yukihiro Yabuta +5 more
2013Molecules and Cells109 citations Open access
Semantic Scholar
In vitro expansion of mouse primordial germ cell‐like cells recapitulates an epigenetic blank slate
H. Ohta, K. Kurimoto, I. Okamoto, Tomonori Nakamura +8 more
2017EMBO Journal106 citations Open access
Semantic Scholar
ZGLP1 is a determinant for the oogenic fate in mice
So I. Nagaoka, Fumio Nakaki, H. Miyauchi, Yoshiaki Nosaka +7 more
2020Science92 citations Open access
Semantic Scholar
In vitro reconstitution of epigenetic reprogramming in the human germ line
Yusuke Murase, Ryuta Yokogawa, Yukihiro Yabuta, Masahiro Nagano +12 more
2024Nature65 citations
Semantic Scholar
Clonal variation of human induced pluripotent stem cells for induction into the germ cell fate†
Shihori Yokobayashi, K. Okita, M. Nakagawa, Tomonori Nakamura +3 more
2017Biology of Reproduction65 citations Open access
Semantic Scholar
Folding Pathway Mediated by an Intramolecular Chaperone
Yukihiro Yabuta, H. Takagi, M. Inouye, U. Shinde
2001Journal of Biological Chemistry63 citations Open access
Semantic Scholar
Long‐term expansion with germline potential of human primordial germ cell‐like cells in vitro
Yusuke Murase, Yukihiro Yabuta, H. Ohta, C. Yamashiro +3 more
2020EMBO Journal59 citations Open access
Semantic Scholar
GATA transcription factors, SOX17 and TFAP2C, drive the human germ-cell specification program
Yoji Kojima, C. Yamashiro, Yusuke Murase, Yukihiro Yabuta +8 more
2021Life Science Alliance57 citations Open access
Semantic Scholar
Induction of the germ cell fate from pluripotent stem cells in cynomolgus monkeys†
Y. Sakai, Tomonori Nakamura, I. Okamoto, Sayuri Gyobu-Motani +10 more
2019Biology of Reproduction54 citations
Semantic Scholar
The X chromosome dosage compensation program during the development of cynomolgus monkeys
I. Okamoto, Tomonori Nakamura, Kotaro Sasaki, Yukihiro Yabuta +6 more
2021Science53 citations
Semantic Scholar
Locus- and domain-dependent control of DNA methylation at mouse B1 retrotransposons during male germ cell development.
K. Ichiyanagi, Yufeng Li, Toshiaki Watanabe, Tomoko Ichiyanagi +9 more
2011Genome Research51 citations Open access
Semantic Scholar
Folding pathway mediated by an intramolecular chaperone: the structural and functional characterization of the aqualysin I propeptide.
C. Marie-Claire, Yukihiro Yabuta, Kyoko Suefuji, Hiroshi Matsuzawa +1 more
2001Journal of Molecular Biology50 citations
Semantic Scholar
Single-cell transcriptome of early embryos and cultured embryonic stem cells of cynomolgus monkeys
Tomonori Nakamura, Yukihiro Yabuta, I. Okamoto, Kotaro Sasaki +3 more
2017Scientific Data49 citations Open access
Semantic Scholar
Folding pathway mediated by an intramolecular chaperone: dissecting conformational changes coincident with autoprocessing and the role of Ca(2+) in subtilisin maturation.
Yukihiro Yabuta, Ezhilkani Subbian, H. Takagi, U. Shinde +1 more
2002Journal of Biochemistry (Tokyo)43 citations
Semantic Scholar
Folding pathway mediated by an intramolecular chaperone: intrinsically unstructured propeptide modulates stochastic activation of subtilisin.
Ezhilkani Subbian, Yukihiro Yabuta, U. Shinde
2005Journal of Molecular Biology41 citations
Semantic Scholar
Positive selection dictates the choice between kinetic and thermodynamic protein folding and stability in subtilases.
Ezhilkani Subbian, Yukihiro Yabuta, U. Shinde
2004Biochemistry39 citations
Semantic Scholar
Resolution of the curse of dimensionality in single-cell RNA sequencing data analysis
Yusuke Imoto, Tomonori Nakamura, Emerson G. Escolar, Michio Yoshiwaki +6 more
2022Life Science Alliance37 citations Open access
Semantic Scholar
Directed biosynthesis of fluorinated pseurotin A, synerazol and gliotoxin.
Y. Igarashi, Yukihiro Yabuta, Akira Sekine, Kiyonaga Fujii +5 more
2004Journal of antibiotics (Tokyo. 1968)37 citations Open access
Semantic Scholar
The embryonic ontogeny of the gonadal somatic cells in mice and monkeys.
Kotaro Sasaki, A. Oguchi, K. Cheng, Yasuhiro Murakawa +8 more
2021Cell Reports36 citations Open access
Semantic Scholar
The CD44/COL17A1 pathway promotes the formation of multilayered, transformed epithelia.
Kei Kozawa, Miho Sekai, K. Ohba, S. Ito +31 more
2021Current Biology35 citations Open access
Semantic Scholar
Folding Pathway Mediated by an Intramolecular Chaperone
Yukihiro Yabuta, Ezhilkani Subbian, C. Oiry, U. Shinde
2003Journal of Biological Chemistry33 citations Open access
Semantic Scholar
Folding Pathway Mediated by an Intramolecular Chaperone PROPEPTIDE RELEASE MODULATES ACTIVATION PRECISION OF PRO-SUBTILISIN*
Yukihiro Yabuta, H. Takagi, M. Inouye, U. Shinde
200133 citations
Semantic Scholar
scEGOT: single-cell trajectory inference framework based on entropic Gaussian mixture optimal transport
Toshiaki Yachimura, Hanbo Wang, Yusuke Imoto, Momoko Yoshida +5 more
2024bioRxiv28 citations Open access
Semantic Scholar
Functional analysis of the propeptides of subtilisin E and aqualysin I as intramolecular chaperones
H. Takagi, M. Koga, Saori Katsurada, Yukihiro Yabuta +3 more
2001FEBS Letters28 citations
Semantic Scholar
Ex vivo reconstitution of fetal oocyte development in humans and cynomolgus monkeys
Ken Mizuta, Yoshitaka Katou, Baku Nakakita, Aoi Kishine +15 more
2022EMBO Journal27 citations Open access
Semantic Scholar
Discrimination of Stem Cell Status after Subjecting Cynomolgus Monkey Pluripotent Stem Cells to Naïve Conversion
Arata Honda, Yoshihiro Kawano, Haruna Izu, N. Choijookhuu +10 more
2017Scientific Reports25 citations Open access
Semantic Scholar
Inherent genomic properties underlie the epigenomic heterogeneity of human induced pluripotent stem cells.
Shihori Yokobayashi, Yukihiro Yabuta, M. Nakagawa, K. Okita +7 more
2021Cell Reports24 citations Open access
Semantic Scholar
Nucleome programming is required for the foundation of totipotency in mammalian germline development
Masahiro Nagano, Bonnie Hu, Shihori Yokobayashi, Akitoshi Yamamura +26 more
2022EMBO Journal23 citations Open access
Semantic Scholar

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Yoji Kojima — researcher profile on SciRah

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U. Shinde — researcher profile on SciRah