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Nathan Mih · SciRah

Researcher profile · Semantic Scholar

Nathan Mih

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Nathan Mih — researcher profile on SciRah

h-index: 18
Works: 29
Citations: 2,404

Most-cited papers

iML1515, a knowledgebase that computes Escherichia coli traits
Jonathan M. Monk, C. Lloyd, Elizabeth Brunk, Nathan Mih +8 more
2017Nature Biotechnology543 citations Open access
Semantic Scholar
Recon3D: A Resource Enabling A Three-Dimensional View of Gene Variation in Human Metabolism
Elizabeth Brunk, Swagatika Sahoo, D. Zielinski, Ali Altunkaya +17 more
2018Nature Biotechnology513 citations Open access
Semantic Scholar
Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models
D. Heckmann, C. Lloyd, Nathan Mih, Yuanchi Ha +5 more
2018Nature Communications210 citations Open access
Semantic Scholar
Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance
Erol S. Kavvas, E. Catoiu, Nathan Mih, J. Yurkovich +8 more
2018Nature Communications168 citations Open access
Semantic Scholar
Systems biology of the structural proteome
Elizabeth Brunk, Nathan Mih, Jonathan M. Monk, Zhen Zhang +6 more
2016BMC Systems Biology151 citations Open access
Semantic Scholar
Unique attributes of cyanobacterial metabolism revealed by improved genome-scale metabolic modeling and essential gene analysis
J. Broddrick, Benjamin E. Rubin, D. Welkie, Niu Du +5 more
2016Proceedings of the National Academy of Sciences of the United States of America115 citations Open access
Semantic Scholar
Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities
X. Fang, Anand V. Sastry, Nathan Mih, Donghyuk Kim +6 more
2017Proceedings of the National Academy of Sciences of the United States of America111 citations Open access
Semantic Scholar
Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655
Ye Gao, J. Yurkovich, S. Seo, Ilyas Kabimoldayev +10 more
2018bioRxiv100 citations Open access
Semantic Scholar
Cellular responses to reactive oxygen species are predicted from molecular mechanisms
Laurence Yang, Nathan Mih, Amitesh Anand, J. Park +17 more
2019Proceedings of the National Academy of Sciences of the United States of America92 citations Open access
Semantic Scholar
Thermosensitivity of growth is determined by chaperone-mediated proteome reallocation
Ke Chen, Ye Gao, Nathan Mih, Edward J. O'Brien +2 more
2017Proceedings of the National Academy of Sciences of the United States of America89 citations Open access
Semantic Scholar
Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa
X. Fang, Jonathan M. Monk, Nathan Mih, Bin Du +5 more
2018BMC Systems Biology49 citations Open access
Semantic Scholar
A computational knowledge-base elucidates the response of Staphylococcus aureus to different media types
Yara Seif, Jonathan M. Monk, Nathan Mih, Hannah Tsunemoto +5 more
2019PLoS Comput. Biol.48 citations Open access
Semantic Scholar
ssbio: A Python Framework for Structural Systems Biology
Nathan Mih, Elizabeth Brunk, Ke Chen, E. Catoiu +6 more
2017bioRxiv40 citations Open access
Semantic Scholar
The Staphylococcus aureus Two-Component System AgrAC Displays Four Distinct Genomic Arrangements That Delineate Genomic Virulence Factor Signatures
K. S. Choudhary, Nathan Mih, Jonathan M. Monk, Erol S. Kavvas +3 more
2018bioRxiv29 citations Open access
Semantic Scholar
Probing the Selectivity and Protein•Protein Interactions of a Non-Reducing Fungal Polyketide Synthase Using Mechanism-Based Crosslinkers
J. Bruegger, Bob Haushalter, A. Vagstad, Gaurav Shakya +4 more
2013Chemistry and Biology29 citations Open access
Semantic Scholar
Mechanisms for Benzene Dissociation through the Excited State of T4 Lysozyme L99A Mutant.
V. Feher, Jamie M. Schiffer, Daniel J. Mermelstein, Nathan Mih +3 more
2019Biophysical Journal23 citations Open access
Semantic Scholar
Bacterial fitness landscapes stratify based on proteome allocation associated with discrete aero-types
Ke Chen, Amitesh Anand, Connor A. Olson, Troy E. Sandberg +3 more
2021PLoS Comput. Biol.20 citations Open access
Semantic Scholar
Genome‐scale metabolic modeling reveals key features of a minimal gene set
Jean-Christophe Lachance, Dominick Matteau, Joelle Brodeur, C. Lloyd +8 more
2021Molecular Systems Biology20 citations Open access
Semantic Scholar
A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism
Nathan Mih, Elizabeth Brunk, A. Bordbar, B. Palsson
2016PLoS Comput. Biol.16 citations Open access
Semantic Scholar
Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes
Nathan Mih, Jonathan M. Monk, X. Fang, E. Catoiu +3 more
2020BMC Bioinformatics12 citations Open access
Semantic Scholar
Expanding the uses of genome‐scale models with protein structures
Nathan Mih, B. Palsson
2019Molecular Systems Biology9 citations Open access
Semantic Scholar
Structure of galactarate dehydratase, a new fold in an enolase involved in bacterial fitness after antibiotic treatment
M. Rosas-Lemus, G. Minasov, L. Shuvalova, Z. Wawrzak +6 more
2019Protein Science6 citations Open access
Semantic Scholar
Multi-scale model of the proteomic and metabolic consequences of reactive oxygen species
Laurence Yang, Nathan Mih, Amitesh Anand, J. Park +17 more
2017bioRxiv5 citations Open access
Semantic Scholar
Establishing comprehensive quaternary structural proteomes from genome sequence
E. Catoiu, Nathan Mih, M. Lu, Bernhard O. Palsson
2023Research Square4 citations Open access
Semantic Scholar
Loss of mitochondrial proline catabolism depletes FAD, impairing sperm function, and male reproductive advantage
C. Yen, Dana L. Ruter, Nathan Mih, Shan-Shan Pang +1 more
2018bioRxiv2 citations Open access
Semantic Scholar
Protein structure, a genetic constraint on glycosylation
Benjamin Kellman, Daniel Sandoval, O. Zaytseva, Kelly Brock +35 more
2026bioRxiv1 citations Open access
Semantic Scholar
Establishing comprehensive quaternary structural proteomes from genome sequence
E. Catoiu, Nathan Mih, M. Lu, B. Palsson
2024bioRxiv1 citations Open access
Semantic Scholar
Understanding genetic variation in the proteome: a multi-scale structural systems biology toolkit
Nathan Mih
20180 citations
Semantic Scholar
Loss of mitochondrial proline catabolism depletes FAD, impairing sperm function, and male 1 reproductive advantage 2
C. Yen, Dana L. Ruter, Nathan Mih, Shan-Shan Pang +1 more
0 citations
Semantic Scholar

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Jonathan M. Monk×11
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