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V. Barsegov · SciRah

Researcher profile · Semantic Scholar

V. Barsegov

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V. Barsegov — researcher profile on SciRah

h-index: 23
Works: 103
Citations: 1,725

Most-cited papers

Dynamics of unbinding of cell adhesion molecules: transition from catch to slip bonds.
V. Barsegov, D. Thirumalai
2005Proceedings of the National Academy of Sciences of the United States of America155 citations Open access
Semantic Scholar
Mechanism of Fibrin(ogen) Forced Unfolding
A. Zhmurov, André E. X. Brown, R. Litvinov, R. Dima +2 more
2011Structure135 citations Open access
Semantic Scholar
Mechanical Transition from α-Helical Coiled-Coils to β-Sheets in Fibrin(ogen)
A. Zhmurov, O. Kononova, R. Litvinov, R. Dima +2 more
2012Journal of the American Chemical Society98 citations Open access
Semantic Scholar
Tubulin Bond Energies and Microtubule Biomechanics Determined from Nanoindentation in Silico
O. Kononova, Y. Kholodov, Kelly E. Theisen, K. Marx +4 more
2014Journal of the American Chemical Society80 citations Open access
Semantic Scholar
Dissociation of bimolecular αIIbβ3-fibrinogen complex under a constant tensile force.
R. Litvinov, V. Barsegov, A. Schissler, Andrew R. Fisher +3 more
2011Biophysical Journal66 citations Open access
Semantic Scholar
Assembly and Mechanical Properties of the Cargo-Free and Cargo-Loaded Bacterial Nanocompartment Encapsulin.
J. Snijder, O. Kononova, I. Barbu, C. Uetrecht +8 more
2016Biomacromolecules63 citations Open access
Semantic Scholar
Structural transitions and energy landscape for Cowpea Chlorotic Mottle Virus capsid mechanics from nanomanipulation in vitro and in silico.
O. Kononova, J. Snijder, M. Brasch, Jeroen J. L. M. Cornelissen +5 more
2013Biophysical Journal51 citations Open access
Semantic Scholar
Resolving Two-dimensional Kinetics of the Integrin αIIbβ3-Fibrinogen Interactions Using Binding-Unbinding Correlation Spectroscopy*
R. Litvinov, Andrey Mekler, H. Shuman, J. Bennett +2 more
2012Journal of Biological Chemistry47 citations Open access
Semantic Scholar
Multitime correlation functions for single molecule kinetics with fluctuating bottlenecks
V. Barsegov, V. Chernyak, S. Mukamel
200244 citations
Semantic Scholar
Atomic Structural Models of Fibrin Oligomers
A. Zhmurov, Anna D. Protopopova, R. Litvinov, P. Zhukov +2 more
2018Structure42 citations Open access
Semantic Scholar
Structural Basis of Interfacial Flexibility in Fibrin Oligomers
A. Zhmurov, Anna D. Protopopova, R. Litvinov, P. Zhukov +3 more
2016Structure40 citations Open access
Semantic Scholar
Generation of random numbers on graphics processors: forced indentation in silico of the bacteriophage HK97.
A. Zhmurov, K. Rybnikov, Y. Kholodov, V. Barsegov
2011Journal of Physical Chemistry B40 citations
Semantic Scholar
Strength and Deformability of Fibrin Clots: Biomechanics, Thermodynamics, and Mechanisms of Rupture
Valerie Tutwiler, Farkhad Maksudov, R. Litvinov, J. Weisel +1 more
2021Acta Biomaterialia39 citations Open access
Semantic Scholar
Regulatory element in fibrin triggers tension-activated transition from catch to slip bonds
R. I. Litvinov, O. Kononova, A. Zhmurov, K. Marx +3 more
2018Proceedings of the National Academy of Sciences of the United States of America39 citations Open access
Semantic Scholar
Conformational Flexibility and Self-Association of Fibrinogen in Concentrated Solutions.
Y. Zuev, R. Litvinov, A. E. Sitnitsky, B. Idiyatullin +5 more
2017Journal of Physical Chemistry B33 citations
Semantic Scholar
Therapeutic phosphorodiamidate morpholino oligonucleotides: Physical properties, solution structures, and folding thermodynamics
Farkhad Maksudov, E. Kliuchnikov, Daniel Pierson, M. L. Ujwal +3 more
2023Molecular Therapy: Nucleic Acids32 citations Open access
Semantic Scholar
Mechanistic Basis for the Binding of RGD- and AGDV-Peptides to the Platelet Integrin αIIbβ3
O. Kononova, R. Litvinov, D. S. Blokhin, V. Klochkov +3 more
2017Biochemistry31 citations Open access
Semantic Scholar
Quantum decoherence, Zeno process, and time symmetry breaking.
T. Petrosky, V. Barsegov
2002Physical review. E, Statistical, nonlinear, and soft matter physics28 citations
Semantic Scholar
Strength, Deformability and Toughness of Uncrosslinked Fibrin Fibers from Theoretical Reconstruction of Stress-Strain Curves
Farkhad Maksudov, A. Daraei, Anuj Sesha, K. Marx +2 more
2021Acta Biomaterialia27 citations Open access
Semantic Scholar
Molecular Mechanisms, Thermodynamics, and Dissociation Kinetics of Knob-Hole Interactions in Fibrin*
O. Kononova, R. Litvinov, A. Zhmurov, Andrey Alekseenko +5 more
2013Journal of Biological Chemistry27 citations Open access
Semantic Scholar
Dynamic competition between catch and slip bonds in selectins bound to ligands.
V. Barsegov, D. Thirumalai
2006Journal of Physical Chemistry B26 citations Open access
Semantic Scholar
Dynamics of microtubules: highlights of recent computational and experimental investigations
V. Barsegov, J. Ross, R. Dima
2017Journal of Physics: Condensed Matter25 citations Open access
Semantic Scholar
Probing single molecule kinetics by photon arrival trajectories
V. Barsegov, S. Mukamel
200225 citations
Semantic Scholar
Dynamic Transition from α-Helices to β-Sheets in Polypeptide Coiled-Coil Motifs.
K. A. Minin, A. Zhmurov, K. Marx, P. Purohit +1 more
2017Journal of the American Chemical Society23 citations
Semantic Scholar
Distinct Specificity and Single-molecule Kinetics Characterize the Interaction of Pathogenic and Non-pathogenic Antibodies against Platelet Factor 4-Heparin Complexes with Platelet Factor 4*
R. Litvinov, S. Yarovoi, L. Rauova, V. Barsegov +6 more
2013Journal of Biological Chemistry23 citations Open access
Semantic Scholar
Mapping the energy landscape of biomolecules using single molecule force correlation spectroscopy: theory and applications.
V. Barsegov, D. Klimov, D. Thirumalai
2006Biophysical Journal23 citations Open access
Semantic Scholar
Multipoint Fluorescence Quenching-Time Statistics for Single Molecules with Anomalous Diffusion
V. Barsegov, S. Mukamel
200423 citations Open access
Semantic Scholar
Nonparametric density estimation and optimal bandwidth selection for protein unfolding and unbinding data.
E. Bura, A. Zhmurov, V. Barsegov
2009Journal of Chemical Physics22 citations Open access
Semantic Scholar
Probing protein-protein interactions by dynamic force correlation spectroscopy.
V. Barsegov, D. Thirumalai
2005Physical Review Letters22 citations Open access
Semantic Scholar
Molecular packing structure of fibrin fibers resolved by X-ray scattering and molecular modeling
K. Jansen, A. Zhmurov, B. Vos, G. Portale +8 more
2020bioRxiv21 citations Open access
Semantic Scholar
Role of internal chain dynamics on the rupture kinetic of adhesive contacts.
V. Barsegov, G. Morrison, D. Thirumalai
2008Physical Review Letters21 citations Open access
Semantic Scholar
Improving the potency prediction for chemically modified siRNAs through insights from molecular modeling of individual sequence positions
E. Kliuchnikov, Farkhad Maksudov, Jeffrey Zuber, Sarah Hyde +6 more
2024Molecular Therapy: Nucleic Acids17 citations Open access
Semantic Scholar
Fluctuating Nonlinear Spring Model of Mechanical Deformation of Biological Particles
O. Kononova, J. Snijder, Y. Kholodov, K. Marx +3 more
2015PLoS Comput. Biol.17 citations Open access
Semantic Scholar
Biomechanics, Energetics, and Structural Basis of Rupture of Fibrin Networks
R. Ramanujam, Farkhad Maksudov, R. Litvinov, C. Nagaswami +3 more
2023Advanced Healthcare Materials14 citations Open access
Semantic Scholar
Botulinum neurotoxin: unique folding of enzyme domain of the most-poisonous poison
Raj Kumar, Roshan V. Kukreja, Li Li, A. Zhmurov +5 more
2014Journal of Biomolecular Structure and Dynamics14 citations Open access
Semantic Scholar
Mechanical Unbinding of Aβ Peptides from Amyloid Fibrils
E. P. Raman, Takako Takeda, V. Barsegov, D. Klimov
200714 citations
Semantic Scholar
Rupture mechanics of blood clots: Influence of fibrin network structure on the rupture resistance
R. Ramanujam, Farkhad Maksudov, R. Risman, R. Litvinov +5 more
2024Acta Biomaterialia13 citations Open access
Semantic Scholar
Multiscale modeling of the nanomechanics of microtubule protofilaments.
Kelly E. Theisen, A. Zhmurov, M. Newberry, V. Barsegov +1 more
2012Journal of Physical Chemistry B13 citations
Semantic Scholar
Exploring the mechanical stability of the C2 domains in human synaptotagmin 1.
L. Duan, A. Zhmurov, V. Barsegov, R. Dima
2011Journal of Physical Chemistry B13 citations
Semantic Scholar
Analyzing forced unfolding of protein tandems by ordered variates, 2: dependent unfolding times.
E. Bura, D. Klimov, V. Barsegov
2007Biophysical Journal13 citations Open access
Semantic Scholar
Multidimensional spectroscopic probes of single molecule fluctuations
V. Barsegov, S. Mukamel
200213 citations
Semantic Scholar
Exploring effects of platelet contractility on the kinetics, thermodynamics, and mechanisms of fibrin clot contraction
E. Kliuchnikov, A. D. Peshkova, Minh Vo, Kenneth A. Marx +4 more
2025npj Biological Physics and Mechanics12 citations Open access
Semantic Scholar
Charge transport in individual short base stacked single-stranded RNA molecules
S. Chandra, Ajoke Williams, Farkhad Maksudov, E. Kliuchnikov +6 more
2023Scientific Reports12 citations Open access
Semantic Scholar
SOP‐GPU: influence of solvent‐induced hydrodynamic interactions on dynamic structural transitions in protein assemblies
Andrey Alekseenko, O. Kononova, Y. Kholodov, K. Marx +1 more
2016Journal of Computational Chemistry11 citations Open access
Semantic Scholar
CellDynaMo–stochastic reaction-diffusion-dynamics model: Application to search-and-capture process of mitotic spindle assembly
E. Kliuchnikov, A. Zhmurov, K. Marx, A. Mogilner +1 more
2022PLoS Comput. Biol.10 citations Open access
Semantic Scholar
Fibrin protofibril packing and clot stability are enhanced by extended knob-hole interactions and catch-slip bonds
N. Asquith, C. Duval, A. Zhmurov, S. Baker +5 more
2022Blood Advances10 citations Open access
Semantic Scholar
TensorCalculator: exploring the evolution of mechanical stress in the CCMV capsid
O. Kononova, Farkhad Maksudov, K. Marx, V. Barsegov
2018Journal of Physics: Condensed Matter10 citations Open access
Semantic Scholar
Microtubule assembly and disassembly dynamics model: Exploring dynamic instability and identifying features of Microtubules’ Growth, Catastrophe, Shortening, and Rescue
E. Kliuchnikov, Eugene Klyshko, M. S. Kelly, A. Zhmurov +3 more
2022Computational and Structural Biotechnology Journal9 citations Open access
Semantic Scholar
Folding of tandem‐linked domains
E. P. Raman, V. Barsegov, D. Klimov
2007Proteins: Structure, Function, and Bioinformatics9 citations Open access
Semantic Scholar
Strength, Deformability, Damage and Fracture Toughness of Fibrous Material Networks: Application to Fibrin Clots.
E. Kliuchnikov, Angelos Gkarsen Dagklis, R. Litvinov, Kenneth A. Marx +4 more
2025Acta Biomaterialia8 citations Open access
Semantic Scholar

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