Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

Atul Kakrana · SciRah

Researcher profile · Semantic Scholar

Atul Kakrana

Share profile

Atul Kakrana — researcher profile on SciRah

h-index: 15
Works: 34
Citations: 976

Most-cited papers

The asparagus genome sheds light on the origin and evolution of a young Y chromosome
Alex Harkess, Jin-Song Zhou, Chunyan Xu, J. Bowers +38 more
2017Nature Communications263 citations Open access
Semantic Scholar
An Atlas of Soybean Small RNAs Identifies Phased siRNAs from Hundreds of Coding Genes[W]
S. Arikit, Rui Xia, Atul Kakrana, Kun Huang +8 more
2014The Plant Cell139 citations Open access
Semantic Scholar
iSyTE 2.0: a database for expression-based gene discovery in the eye
Atul Kakrana, Andrian Yang, D. Anand, Djordje Djordjević +5 more
2017Nucleic Acids Res.88 citations Open access
Semantic Scholar
sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software
Atul Kakrana, Reza K. Hammond, P. Patel, Mayumi Nakano +1 more
2014Nucleic Acids Research81 citations Open access
Semantic Scholar
The RNA-binding protein Celf1 post-transcriptionally regulates p27Kip1 and Dnase2b to control fiber cell nuclear degradation in lens development
Archana D. Siddam, C. Gautier-Courteille, Linette Perez-Campos, D. Anand +8 more
2018PLoS Genetics53 citations Open access
Semantic Scholar
Compound mouse mutants of bZIP transcription factors Mafg and Mafk reveal a regulatory network of non-crystallin genes associated with cataract
S. Agrawal, D. Anand, Archana D. Siddam, Atul Kakrana +9 more
2015Human Genetics53 citations Open access
Semantic Scholar
Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots
Atul Kakrana, S. Mathioni, Kun Huang, Reza K. Hammond +9 more
2018Genome Research45 citations Open access
Semantic Scholar
The dicer-like1 Homolog fuzzy tassel Is Required for the Regulation of Meristem Determinacy in the Inflorescence and Vegetative Growth in Maize[W][OPEN]
B. Thompson, C. Basham, Reza K. Hammond, Que-Ying Ding +6 more
2014The Plant Cell43 citations Open access
Semantic Scholar
RNA-sequencing-based transcriptomic profiles of embryonic lens development for cataract gene discovery
D. Anand, Atul Kakrana, Archana D. Siddam, Hong-Zhan Huang +2 more
2018Human Genetics37 citations Open access
Semantic Scholar
Characterization of Plant Small RNAs by Next Generation Sequencing.
S. Mathioni, Atul Kakrana, B. Meyers
2017Current Protocols in Plant Biology29 citations
Semantic Scholar
PHASIS: A computational suite for de novo discovery and characterization of phased, siRNA-generating loci and their miRNA triggers
Atul Kakrana, Pingchuan Li, P. Patel, Reza K. Hammond +3 more
2017bioRxiv26 citations Open access
Semantic Scholar
Ecology, Evolution and Organismal Biology Publications Ecology, Evolution and Organismal Biology Composition and Expression of Conserved Microrna Genes in Diploid Cotton (gossypium) Species Composition and Expression of Conserved Microrna Genes in Diploid Cotton (gossypium) Species
L. Gong, Atul Kakrana, S. Arikit, B. Meyers +1 more
26 citations
Semantic Scholar
Reproductive phasiRNAs in grasses are compositionally distinct from other classes of small RNAs
P. Patel, S. Mathioni, Atul Kakrana, H. Shatkay +1 more
2018bioRxiv24 citations Open access
Semantic Scholar
miTRATA: a web-based tool for microRNA Truncation and Tailing Analysis
P. Patel, S. Ramachandruni, Atul Kakrana, Mayumi Nakano +1 more
2016Bioinform.24 citations Open access
Semantic Scholar
Reproductive phasiRNA loci and DICER-LIKE5, but not microRNA loci, diversified in monocotyledonous plants
P. Patel, S. Mathioni, Reza K. Hammond, A. Harkess +4 more
2020bioRxiv23 citations Open access
Semantic Scholar
Post-transcriptional adaptation of the aquatic plant Spirodela polyrhiza under stress and hormonal stimuli.
P. Fourounjian, Jie Tang, B. Tanyolac, Yaping Feng +7 more
2019The Plant Journal15 citations Open access
Semantic Scholar
Microsporogenesis and the biosynthesis of floral small interfering RNAs in coffee have a unique pattern among eudicots, suggesting a sensitivity to climate changes
K. K. P. de Oliveira, R. R. de Oliveira, Gabriel de Campos Rume, T. H. C. Ribeiro +7 more
2024Plant Direct5 citations Open access
Semantic Scholar
Coffee microsporogenesis and related small interfering RNAs biosynthesis have a unique pattern among eudicots suggesting a sensitivity to climate changes
K. K. P. de Oliveira, R. R. de Oliveira, Gabriel de Campos Rume, T. H. C. Ribeiro +6 more
2023bioRxiv2 citations Open access
Semantic Scholar
Sequence analysis miTRATA : a web-based tool for mi croRNA Tr uncation a nd T ailing A nalysis
P. Patel, S. Ramachandruni, Atul Kakrana, Mayumi Nakano +1 more
20162 citations
Semantic Scholar
Host-delivered RNAi-mediated root-knot nematode resistance in Arabidopsis by targeting splicing factor and integrase genes
Ajay Kumar, Atul Kakrana, A. Sirohi, K. Subramaniam +3 more
2017Journal of General Plant Pathology1 citations
Semantic Scholar
90 Focus on a clear message: conserved RNA binding proteins function in mRNA control in eye lens development and their deficiency causes cataract
Archana D. Siddam, C. Gautier-Courteille, Atul Kakrana, V. Legagneux +9 more
2015Journal of Biomolecular Structure and Dynamics1 citations Open access
Semantic Scholar
Characterization of lens defects in mouse mutants of bZIP transcription factors MafG and MafK
S. Agrawal, Atul Kakrana, Christine A. Dang, D. Scheiblin +4 more
20141 citations
Semantic Scholar
Phasis: a software tool for register-resolved discovery of plant phased small RNA loci
T. H. C. Ribeiro, Atul Kakrana, V. Maia, Scott Lewis +1 more
2026bioRxiv0 citations Open access
Semantic Scholar
A Framework for Automated Extraction of Information for Clinical Decision Support from Images of Flow Charts and Decision Trees
M. Sandora, Elia Lima-Walton, Atul Kakrana, Marvin Thielk +1 more
20200 citations
Semantic Scholar
Transcriptome landscape of early lens development
S. Lachke, Atul Kakrana, Archana D. Siddam, I. Saadi +1 more
20180 citations
Semantic Scholar
Aquaporin-0 modulates normal shape of gap junction-associated balland-socket domains which display distinct patterns in mouse and monkey lenses
S. Bhat, Rajendra K. Gangalum, D. Anand, Atul Kakrana +11 more
20170 citations
Semantic Scholar
RNA-seq based identification of long non-coding RNAs (lncRNAs) in early lens development
D. Anand, Atul Kakrana, Archana D. Siddam, I. Saadi +1 more
20170 citations
Semantic Scholar
Integrated, scalable tools for small RNA genomics: novel algorithms and their application to characterize germline-associated sRNA pathways in diverse species
Atul Kakrana
20170 citations
Semantic Scholar
Integration of cornea expression microarrays in iSyTE to expedite eye gene discovery
Atul Kakrana, D. Anand, S. Lachke
20160 citations
Semantic Scholar
Co-expression based regulatory network for lens development
Atul Kakrana, Djordje Djordjević, Andrian Yang, D. Anand +5 more
20150 citations
Semantic Scholar
Integration of temporal lens gene expression datasets to expand the gene discovery tool iSyTE
Atul Kakrana, J. Ho, B. Meyers, D. Beebe +3 more
20140 citations
Semantic Scholar
Identification of small MAF family transcription factors MafG and MafK associated with cataract
S. Lachke, S. Agrawal, Atul Kakrana, Christine A. Dang +3 more
20130 citations
Semantic Scholar
Random Amplified Polymorphic DNA Markers for Prediction of Resistance in Tomato against Root-Knot Nematode, Meloidogyne incognita
A. Sirohi, Atul Kakrana, Pankaj, Deepika Rohatgi +1 more
20070 citations
Semantic Scholar
Article Title: A multi-omics approach to maize ( Zea mays ) tassel development
Finn Hartmann, S. Mathioni, Atul Kakrana, Blake C. Meyers +3 more
0 citations
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

B. Meyers×15
Invite
B. Meyers — researcher profile on SciRah
S. Lachke×13
Invite
S. Lachke — researcher profile on SciRah
D. Anand×10
Invite
D. Anand — researcher profile on SciRah
S. Mathioni×9
Invite
S. Mathioni — researcher profile on SciRah

×7

Invite

P. Patel — researcher profile on SciRah

Archana D. Siddam×7

Invite

Archana D. Siddam — researcher profile on SciRah

Abhyudai Singh×6

Invite

Abhyudai Singh — researcher profile on SciRah

Invite

S. Arikit — researcher profile on SciRah

Reza K. Hammond×5

Invite

Reza K. Hammond — researcher profile on SciRah

Christine A. Dang×5

Invite

Christine A. Dang — researcher profile on SciRah

Mayumi Nakano×4

Invite

Mayumi Nakano — researcher profile on SciRah

Invite

I. Saadi — researcher profile on SciRah