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A. Gultyaev · SciRah

Researcher profile · Semantic Scholar

A. Gultyaev

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A. Gultyaev — researcher profile on SciRah

h-index: 32
Works: 72
Citations: 3,054

Most-cited papers

The computer simulation of RNA folding pathways using a genetic algorithm.
A. Gultyaev, F. H. D. van Batenburg, C. Pleij
1995Journal of Molecular Biology338 citations
Semantic Scholar
Arterivirus discontinuous mRNA transcription is guided by base pairing between sense and antisense transcription-regulating sequences.
G. van Marle, J. C. Dobbe, A. Gultyaev, Willem Luytjes +2 more
1999Proceedings of the National Academy of Sciences of the United States of America235 citations Open access
Semantic Scholar
Antisense RNA-regulated programmed cell death.
K. Gerdes, A. Gultyaev, T. Franch, K. Pedersen +1 more
1997Annual Review of Genetics212 citations
Semantic Scholar
An APL-programmed genetic algorithm for the prediction of RNA secondary structure.
F. H. D. van Batenburg, A. Gultyaev, C. Pleij
1995Journal of Theoretical Biology198 citations
Semantic Scholar
PseudoBase: a database with RNA pseudoknots
F. H. D. van Batenburg, A. Gultyaev, C. Pleij, J. Ng +1 more
2000Nucleic Acids Res.171 citations Open access
Semantic Scholar
PseudoBase: structural information on RNA pseudoknots
F. H. D. van Batenburg, A. Gultyaev, C. Pleij
2001Nucleic Acids Res.121 citations Open access
Semantic Scholar
Programmed cell death by hok/sok of plasmid R1: processing at the hok mRNA 3'-end triggers structural rearrangements that allow translation and antisense RNA binding.
T. Franch, A. Gultyaev, Kenn Gerdes
1997Journal of Molecular Biology111 citations
Semantic Scholar
PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots
M. Taufer, Abel Licon, R. Araiza, David Mireles +3 more
2008Nucleic Acids Res.84 citations Open access
Semantic Scholar
Discontinuous Subgenomic RNA Synthesis in Arteriviruses Is Guided by an RNA Hairpin Structure Located in the Genomic Leader Region
Erwin van den Born, C. Posthuma, A. Gultyaev, E. Snijder
2005Journal of Virology79 citations Open access
Semantic Scholar
An approximation of loop free energy values of RNA H-pseudoknots.
A. Gultyaev, F. H. D. van Batenburg, C. Pleij
1999RNA: A publication of the RNA Society79 citations Open access
Semantic Scholar
Secondary structure and function of the 5'-proximal region of the equine arteritis virus RNA genome.
Erwin van den Born, A. Gultyaev, E. Snijder
2004RNA: A publication of the RNA Society78 citations Open access
Semantic Scholar
Hemagglutinin Subtype Specificity and Mechanisms of Highly Pathogenic Avian Influenza Virus Genesis
A. D. de Bruin, Mathis Funk, Monique I. Spronken, A. Gultyaev +2 more
2022Viruses58 citations Open access
Semantic Scholar
Identification of conserved secondary structures and expansion segments in enod40 RNAs reveals new enod40 homologues in plants
A. Gultyaev, A. Roussis
2007Nucleic Acids Research58 citations Open access
Semantic Scholar
Influenza Virus RNA Structure: Unique and Common Features
A. Gultyaev, R. Fouchier, R. Olsthoorn
2010International Reviews of Immunology55 citations Open access
Semantic Scholar
Genetic Manipulation of Arterivirus Alternative mRNA Leader-Body Junction Sites Reveals Tight Regulation of Structural Protein Expression
A. Pasternak, A. Gultyaev, W. Spaan, E. Snijder
2000Journal of Virology55 citations Open access
Semantic Scholar
The computer simulation of RNA folding involving pseudoknot formation.
A. Gultyaev
1991Nucleic Acids Research54 citations Open access
Semantic Scholar
Conservation of RNA structures enables TNV and BYDV 5' and 3' elements to cooperate synergistically in cap-independent translation.
F. Meulewaeter, Rosalinde van Lipzig, A. Gultyaev, C. Pleij +3 more
2004Nucleic Acids Research51 citations Open access
Semantic Scholar
RNA structural constraints in the evolution of the influenza A virus genome NP segment
A. Gultyaev, A. Tsyganov-Bodounov, Monique I. Spronken, Sander B. van der Kooij +2 more
2014RNA Biology50 citations Open access
Semantic Scholar
Programmed cell death by hok/sok of plasmid R1: coupled nucleotide covariations reveal a phylogenetically conserved folding pathway in the hok family of mRNAs.
A. Gultyaev, T. Franch, Kenn Gerdes
1997Journal of Molecular Biology50 citations
Semantic Scholar
Excessive production and extreme editing of human metapneumovirus defective interfering RNA is associated with type I IFN induction
B. G. van den Hoogen, S. van Boheemen, Jonneke C. W. M. de Rijck, S. van Nieuwkoop +5 more
2014Journal of General Virology49 citations Open access
Semantic Scholar
An RNA conformational shift in recent H5N1 influenza A viruses
A. Gultyaev, H. A. Heus, R. Olsthoorn
2007Bioinform.45 citations Open access
Semantic Scholar
The mechanism of actinomycin D-mediated inhibition of HIV-1 reverse transcription.
R. Jeeninga, H. Huthoff, A. Gultyaev, B. Berkhout
1998Nucleic Acids Research44 citations Open access
Semantic Scholar
Structural motifs in the RNA encoded by the early nodulation gene enod40 of soybean.
G. Girard, A. Roussis, A. Gultyaev, C. Pleij +1 more
2003Nucleic Acids Research43 citations Open access
Semantic Scholar
Metastable structures and refolding kinetics in hok mRNA of plasmid R1.
J. H. Nagel, A. Gultyaev, K. Gerdes, C. Pleij
1999RNA: A publication of the RNA Society43 citations Open access
Semantic Scholar
Dynamic competition between alternative structures in viroid RNAs simulated by an RNA folding algorithm.
A. Gultyaev, F. H. D. van Batenburg, C. Pleij
1998Journal of Molecular Biology43 citations
Semantic Scholar
The influence of a metastable structure in plasmid primer RNA on antisense RNA binding kinetics.
A. Gultyaev, F. H. D. van Batenburg, C. Pleij
1995Nucleic Acids Research37 citations Open access
Semantic Scholar
Similarities between the secondary structure of satellite tobacco mosaic virus and tobamovirus RNAs.
A. Gultyaev, E. V. van Batenburg, C. Pleij
1994Journal of General Virology37 citations Open access
Semantic Scholar
Phylogenetic relationships inferred from the sequence and secondary structure of ITS1 rRNA in Albinaria and putative Isabellaria species (Gastropoda, Pulmonata, Clausiliidae).
M. Schilthuizen, E. Gittenberger, A. Gultyaev
1995Molecular Phylogenetics and Evolution35 citations
Semantic Scholar
The 5' and 3' extremities of the satellite tobacco necrosis virus translational enhancer domain contribute differentially to stimulation of translation.
Rosalinde van Lipzig, A. Gultyaev, C. Pleij, M. Van Montagu +2 more
2002RNA: A publication of the RNA Society34 citations Open access
Semantic Scholar
Subtype-specific structural constraints in the evolution of influenza A virus hemagglutinin genes
A. Gultyaev, Monique I. Spronken, M. Richard, E. Schrauwen +2 more
2016Scientific Reports33 citations Open access
Semantic Scholar
Secondary structure model of the coat protein gene of turnip yellow mosaic virus RNA: long, C-rich, single-stranded regions.
K. Hellendoorn, Anton W. Mat, A. Gultyaev, C. Pleij
1996Virology33 citations Open access
Semantic Scholar
A family of non-classical pseudoknots in influenza A and B viruses
A. Gultyaev, R. Olsthoorn
2010RNA Biology32 citations Open access
Semantic Scholar
Optimisations and Challenges Involved in the Creation of Various Bioluminescent and Fluorescent Influenza A Virus Strains for In Vitro and In Vivo Applications
Monique I. Spronken, K. R. Short, S. Herfst, T. Bestebroer +11 more
2015PLoS ONE28 citations Open access
Semantic Scholar
Nemesia ring necrosis virus: a new tymovirus with a genomic RNA having a histidylatable tobamovirus-like 3' end.
R. Koenig, S. Barends, A. Gultyaev, D. Lesemann +3 more
2005Journal of General Virology28 citations Open access
Semantic Scholar
Functional evidence for D‐ and T‐loop interactions in tmRNA
S. Barends, K. Björk, A. Gultyaev, M. D. de Smit +2 more
2002FEBS Letters26 citations
Semantic Scholar
Plasmid Maintenance Systems
K. Gerdes, S. Ayora, I. Canosa, Piotr Cegłowski +9 more
200025 citations
Semantic Scholar
The nucleotide sequence of satellite tobacco necrosis virus strain C and helper-assisted replication of wild-type and mutant clones of the virus.
D. Bringloe, A. Gultyaev, M. Pelpel, C. Pleij +1 more
1998Journal of General Virology23 citations Open access
Semantic Scholar
Structural features of an Xrn1-resistant plant virus RNA
I. W. Dilweg, A. Gultyaev, R. Olsthoorn
2019RNA Biology22 citations Open access
Semantic Scholar
A pH-jump approach for investigating secondary structure refolding kinetics in RNA.
J. H. Nagel, A. Gultyaev, K. J. Öistämö, K. Gerdes +1 more
2002Nucleic Acids Research22 citations Open access
Semantic Scholar
Conserved structural RNA domains in regions coding for cleavage site motifs in hemagglutinin genes of influenza viruses
A. Gultyaev, M. Richard, Monique I. Spronken, R. Olsthoorn +1 more
2019Virus Evolution20 citations Open access
Semantic Scholar
Structural variation and functional importance of a D-loop-T-loop interaction in valine-accepting tRNA-like structures of plant viral RNAs.
M. D. de Smit, A. Gultyaev, M. Hilge, H. Bink +3 more
2002Nucleic Acids Research18 citations Open access
Semantic Scholar
Insertions of codons encoding basic amino acids in H7 hemagglutinins of influenza A viruses occur by recombination with RNA at hotspots near snoRNA binding sites
A. Gultyaev, Monique I. Spronken, Mathis Funk, R. Fouchier +1 more
2020bioRxiv17 citations Open access
Semantic Scholar
Computer simulation of chaperone effects of Archaeal C/D box sRNA binding on rRNA folding
R. Schoemaker, A. Gultyaev
2006Nucleic Acids Research17 citations Open access
Semantic Scholar
Selective Pressures on RNA Hairpins In Vivo and In Vitro
A. Gultyaev, F. H. D. van Batenburg, C. Pleij
2002Journal of Molecular Evolution16 citations
Semantic Scholar
Coupled nucleotide covariations reveal dynamic RNA interaction patterns.
A. Gultyaev, T. Franch, Kenn Gerdes
2000RNA: A publication of the RNA Society15 citations Open access
Semantic Scholar
Journal of Integrative Bioinformatics
I. Martorelli, Leon S. Helwerda, Jesse Kerkvliet, F. Gomes +6 more
202014 citations
Semantic Scholar
Structural bioinformatics An RNA conformational shift in recent H 5 N 1 influenza A viruses
A. Gultyaev, H. A. Heus, R. Olsthoorn
200714 citations
Semantic Scholar
Xrn1-resistant RNA structures are well-conserved within the genus flavivirus
I. W. Dilweg, Assia Bouabda, Tim J. Dalebout, A. Gultyaev +2 more
2020RNA Biology13 citations Open access
Semantic Scholar
A compensatory mutagenesis study of a conserved hairpin in the M gene segment of influenza A virus shows its role in virus replication
Monique I. Spronken, C. E. van de Sandt, E. De Jongh, O. Vuong +6 more
2017RNA Biology13 citations Open access
Semantic Scholar
Conserved structured domains in plant non-coding RNA enod40, their evolution and recruitment of sequences from transposable elements
A. Gultyaev, C. Koster, Diederik Cames van Batenburg, Tom Sistermans +3 more
2023NAR Genomics and Bioinformatics10 citations Open access
Semantic Scholar

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Monique I. Spronken

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