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L. de Oliveira Martins · SciRah

Researcher profile · Semantic Scholar

L. de Oliveira Martins

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L. de Oliveira Martins — researcher profile on SciRah

h-index: 20
Works: 68
Citations: 1,584

Most-cited papers

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
E. Alm, E. Broberg, T. Connor, Emma B. Hodcroft +496 more
2020Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin199 citations Open access
Semantic Scholar
The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance
Houriiyah Tegally, J. E. San, M. Cotten, M. Moir +397 more
2022medRxiv167 citations Open access
Semantic Scholar
SimPhy: Phylogenomic Simulation of Gene, Locus, and Species Trees
D. Mallo, L. de Oliveira Martins, D. Posada
2015bioRxiv158 citations Open access
Semantic Scholar
Nanoneedle-Mediated Stimulation of Cell Mechanotransduction Machinery
Catherine S. Hansel, S. W. Crowder, S. Cooper, Sahana Gopal +9 more
2019ACS Nano128 citations Open access
Semantic Scholar
Evolutionary Process of Deep-Sea Bathymodiolus Mussels
J. Miyazaki, L. de Oliveira Martins, Y. Fujita, Hiroto Matsumoto +1 more
2010PLoS ONE95 citations Open access
Semantic Scholar
Exposure of Salmonella biofilms to antibiotic concentrations rapidly selects resistance with collateral tradeoffs
Eleftheria Trampari, Emma R. Holden, Gregory J. Wickham, A. Ravi +3 more
2021npj Biofilms and Microbiomes78 citations Open access
Semantic Scholar
CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes
Dave J. Baker, A. Aydin, Thanh Le-Viet, G. Kay +25 more
2021Genome Medicine70 citations Open access
Semantic Scholar
A Bayesian Supertree Model for Genome-Wide Species Tree Reconstruction
L. de Oliveira Martins, D. Mallo, D. Posada
2014Systematic Biology56 citations Open access
Semantic Scholar
Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management
A. Page, A. Mather, Thanh Le-Viet, E. Meader +39 more
2020medRxiv48 citations Open access
Semantic Scholar
Detection of Breast Masses in Mammogram Images Using Growing Neural Gas Algorithm and Ripley’s K Function
L. de Oliveira Martins, A. Silva, A. D. de Paiva, M. Gattass
2009Journal of Signal Processing Systems48 citations
Semantic Scholar
CoronaHiT: large scale multiplexing of SARS-CoV-2 genomes using Nanopore sequencing
Dave J. Baker, G. Kay, A. Aydin, Thanh Le-Viet +25 more
2020bioRxiv47 citations Open access
Semantic Scholar
Phylogenetic Detection of Recombination with a Bayesian Prior on the Distance between Trees
L. de Oliveira Martins, Élcio Leal, H. Kishino
2008PLoS ONE40 citations Open access
Semantic Scholar
Dynamics of competing SARS-CoV-2 variants during the Omicron epidemic in England
O. Eales, L. de Oliveira Martins, A. Page, Hao-Wei Wang +15 more
2022Nature Communications33 citations Open access
Semantic Scholar
Evolutionary relationships of deep-sea mussels inferred by mitochondrial DNA sequences
Hiromi Iwasaki, Akiko Kyuno, Mifue Shintaku, Y. Fujita +6 more
200633 citations
Semantic Scholar
Lineage-specific positive selection at the merozoite surface protein 1 (msp1) locus of Plasmodium vivax and related simian malaria parasites
H. Sawai, H. Otani, N. Arisue, Nirianne M. Q. Palacpac +7 more
2010BMC Evolutionary Biology32 citations Open access
Semantic Scholar
Phylogeography of Loaches of the Genus Lefua (Balitoridae, Cypriniformes) Inferred from Mitochondrial DNA Sequences
Motohiro Mihara, Takehiko Sakai, K. Nakao, L. de Oliveira Martins +2 more
2005Zoological Science27 citations
Semantic Scholar
Taxonomic resolution of the ribosomal RNA operon in bacteria: implications for its use with long-read sequencing
L. de Oliveira Martins, A. Page, Alison E. Mather, I. Charles
2019bioRxiv24 citations Open access
Semantic Scholar
Phylogenomic Analyses of 2,786 Genes in 158 Lineages Support a Root of the Eukaryotic Tree of Life between Opisthokonts and All Other Lineages
Mario A. Cerón-Romero, Miguel M. Fonseca, L. de Oliveira Martins, D. Posada +1 more
2022Genome Biology and Evolution22 citations Open access
Semantic Scholar
SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2
O. Eales, A. Page, L. de Oliveira Martins, Hao-Wei Wang +15 more
2021BMC Infectious Diseases22 citations Open access
Semantic Scholar
Genomic epidemiology and the role of international and regional travel in the SARS-CoV-2 epidemic in Zimbabwe: a retrospective study of routinely collected surveillance data
T. Mashe, F. T. Takawira, L. de Oliveira Martins, M. Gudza-Mugabe +31 more
2021Lancet Global Health21 citations Open access
Semantic Scholar
Datasets for benchmarking antimicrobial resistance genes in bacterial metagenomic and whole genome sequencing
A. Raphenya, James Robertson, C. Jamin, L. de Oliveira Martins +3 more
2022Scientific Data18 citations Open access
Semantic Scholar
Classification of Breast Masses in Mammogram Images Using Ripley's K Function and Support Vector Machine
L. de Oliveira Martins, Erick Corrêa da Silva, A. Silva, A. D. de Paiva +1 more
2007IAPR International Conference on Machine Learning and Data Mining in Pattern Recognition18 citations
Semantic Scholar
Replacement of the Alpha variant of SARS-CoV-2 by the Delta variant in Lebanon between April and June 2021
Georgi Merhi, Alexander J. Trotter, L. de Oliveira Martins, Jad Koweyes +22 more
2021medRxiv15 citations Open access
Semantic Scholar
Evolutionary Dynamics of HIV-1 BF and CB Recombinants and Its Parental Counterparts in South America
Élcio Leal, L. de Oliveira Martins, L. M. Janini, R. Diaz
200815 citations
Semantic Scholar
Repurposing an integrated national influenza platform for genomic surveillance of SARS-CoV-2 in Ghana: a molecular epidemiological analysis
I. Asante, S. N. Hsu, Linda Boatemaa, Lorreta Kwasah +16 more
2023Lancet Global Health13 citations Open access
Semantic Scholar
Codon pairs of the HIV-1 vif gene correlate with CD4+ T cell count
M. C. Bizinoto, S. Yabe, Élcio Leal, H. Kishino +5 more
2013BMC Infectious Diseases13 citations Open access
Semantic Scholar
Antibiotics select for novel pathways of resistance in biofilms
Eleftheria Trampari, Emma R. Holden, Gregory J. Wickham, A. Ravi +5 more
2019bioRxiv11 citations Open access
Semantic Scholar
Detection of Masses in Digital Mammograms using K-means and
L. de Oliveira Martins, A. D. de Paiva, M. Gattass
200911 citations
Semantic Scholar
Surveillance of SARS-CoV-2 in Zimbabwe shows dominance of variants of concern
T. Mashe, F. T. Takawira, H. Gumbo, A. Juru +10 more
2021The Lancet Microbe10 citations Open access
Semantic Scholar
Unsorted Homology within Locus and Species Trees
D. Mallo, L. de Oliveira Martins, D. Posada
2014Systematic Biology10 citations Open access
Semantic Scholar
SARS-CoV-2 variants of concern dominate in Lahore, Pakistan in April 2021
M. Sarwar, Muhammad Yasir, N. Alikhan, N. Afzal +16 more
2021medRxiv9 citations Open access
Semantic Scholar
Species Tree Estimation from Genome-wide Data with Guenomu
L. de Oliveira Martins, D. Posada
2015bioRxiv9 citations Open access
Semantic Scholar
Testing for Universal Common Ancestry
L. de Oliveira Martins, D. Posada
2014Systematic Biology8 citations Open access
Semantic Scholar
A Likelihood-based Index of Protein–Protein Binding Affinities with Application to Influenza HA Escape from Antibodies
Teruaki Watabe, H. Kishino, L. de Oliveira Martins, Y. Kitazoe
2007Molecular biology and evolution7 citations Open access
Semantic Scholar
Population structure and gene flux of Listeria monocytogenes ST121 reveal prophages as a candidate driver of adaptation and persistence in food production environments
Ana Victoria Gutiérrez, Michaela Matthews, M. Diaz, Thanh Le Viet +9 more
2025Microbial Genomics6 citations Open access
Semantic Scholar
Capturing clinically relevant Campylobacter attributes through direct whole genome sequencing of stool
Bilal Djeghout, Thanh Le-Viet, L. de Oliveira Martins, G. Savva +6 more
2024Microbial Genomics6 citations Open access
Semantic Scholar
The new normal? Dynamics and scale of the SARS-CoV-2 variant Omicron epidemic in England
O. Eales, L. de Oliveira Martins, A. Page, Hao-Wei Wang +15 more
2022medRxiv6 citations Open access
Semantic Scholar
SimPhy: comprehensive simulation of gene, locus and species trees at the genome-wide level
D. Mallo, L. de Oliveira Martins, D. Posada
20146 citations
Semantic Scholar
Classification of Breast Tissues in Mammogram Images Using Ripley's K Function and Support Vector Machine
L. de Oliveira Martins, G. Bráz, Erick Corrêa da Silva, A. Silva +1 more
2007International Conference on Image Analysis and Recognition6 citations
Semantic Scholar
Genomic epidemiology of the SARS-CoV-2 epidemic in Zimbabwe: Role of international travel and regional migration in spread
T. Mashe, F. T. Takawira, L. de Oliveira Martins, M. Gudza-Mugabe +29 more
2021medRxiv4 citations Open access
Semantic Scholar
Infinitely long branches and an informal test of common ancestry
L. de Oliveira Martins, D. Posada
2015Biology Direct4 citations Open access
Semantic Scholar
Computer-Aided Detection and Diagnosis of Breast Cancer Using Machine Learning, Texture and Shape Features
G. Bráz, L. de Oliveira Martins, A. Silva, A. D. de Paiva
20124 citations
Semantic Scholar
Distribution of distances between topologies and its effect on detection of phylogenetic recombination
L. de Oliveira Martins, H. Kishino
20104 citations
Semantic Scholar
Comparison of Support Vector Machines and Bayesian Neural Networks Performance for Breast Tissues Using geostatistical Functions in Mammographic Images
G. Bráz, L. de Oliveira Martins, A. Silva, A. D. de Paiva
2010International Journal of Computational Intelligence and Applications4 citations
Semantic Scholar
A multi-isolate genomic approach identifies diverse Escherichia coli contamination and antimicrobial resistance carriage on retail foods
Gabriel Astorga, Samuel J. Bloomfield, R. Palau, N. Janecko +6 more
2025Microbial Genomics3 citations Open access
Semantic Scholar
Tatajuba: exploring the distribution of homopolymer tracts
L. de Oliveira Martins, Samuel J. Bloomfield, Emily Stoakes, Andrew J. Grant +2 more
2022NAR Genomics and Bioinformatics3 citations Open access
Semantic Scholar
A Neural-Bayesian Approach For Predicting Smear Negative Pulmonary Tuberculosis
A. M. dos Santos, A. Silva, L. de Oliveira Martins
20163 citations
Semantic Scholar
Proving universal common ancestry with similar sequences
L. de Oliveira Martins, D. Posada
2012Trends in Evolutionary Biology3 citations Open access
Semantic Scholar
SARS-CoV-2 mutations on diagnostic gene targets in the second wave in Zimbabwe: A retrospective genomic analysis.
C. Nyagupe, L. de Oliveira Martins, H. Gumbo, T. Mashe +12 more
2023South African medical journal = Suid-Afrikaanse tydskrif vir geneeskunde2 citations Open access
Semantic Scholar
Scalable neighbour search and alignment with uvaia
L. de Oliveira Martins, A. Mather, A. Page
2023bioRxiv2 citations Open access
Semantic Scholar

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