Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

Orkun S. Soyer · SciRah

Researcher profile · Semantic Scholar

Orkun S. Soyer

Share profile

Orkun S. Soyer — researcher profile on SciRah

h-index: 31
Works: 117
Citations: 3,107

Most-cited papers

Synthetic microbial communities
T. Großkopf, Orkun S. Soyer
2014Current Opinion in Microbiology480 citations Open access
Semantic Scholar
Cooperation in microbial communities and their biotechnological applications
Matteo Cavaliere, Song Feng, Orkun S. Soyer, José I. Jiménez
2017Environmental Microbiology183 citations Open access
Semantic Scholar
The roles of integration in molecular systems biology.
Maureen A. O'Malley, Orkun S. Soyer
2012Studies in history and philosophy of biological and biomedical sciences125 citations
Semantic Scholar
STRONG: metagenomics strain resolution on assembly graphs
C. Quince, S. Nurk, Sébastien Raguideau, R. James +6 more
2021Genome Biology92 citations Open access
Semantic Scholar
Scanning ion conductance microscopy reveals differences in the ionic environments of gram positive and negative bacteria
Kelsey Cremin, Bryn A. Jones, J. Teahan, G. Meloni +5 more
2020bioRxiv84 citations Open access
Semantic Scholar
A Single Community Dominates Structure and Function of a Mixture of Multiple Methanogenic Communities.
P. Sierocinski, K. Milferstedt, Florian Bayer, T. Großkopf +7 more
2017Current Biology82 citations Open access
Semantic Scholar
Microbial diversity arising from thermodynamic constraints
T. Großkopf, Orkun S. Soyer
2016The ISME Journal82 citations Open access
Semantic Scholar
Evolutionary Systems Biology
Orkun S. Soyer
2012Advances in Experimental Medicine and Biology76 citations
Semantic Scholar
Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment
T. Großkopf, Jessika Consuegra, J. Gaffé, J. Willison +3 more
2016BMC Evolutionary Biology75 citations Open access
Semantic Scholar
Bioelectrical understanding and engineering of cell biology
Zoe Schofield, G. Meloni, Peter Tran, Christian Zerfaß +13 more
2020Journal of the Royal Society Interface70 citations Open access
Semantic Scholar
Impact of spatial organization on a novel auxotrophic interaction among soil microbes
Xue Jiang, Christian Zerfaß, Song Feng, R. Eichmann +3 more
2017The ISME Journal68 citations Open access
Semantic Scholar
Metabolic tinker: an online tool for guiding the design of synthetic metabolic pathways
Kent McClymont, Orkun S. Soyer
2013Nucleic Acids Research60 citations Open access
Semantic Scholar
Evolution under Fluctuating Environments Explains Observed Robustness in Metabolic Networks
Orkun S. Soyer, T. Pfeiffer
2010PLoS Comput. Biol.56 citations Open access
Semantic Scholar
Integrated human-virus metabolic stoichiometric modelling predicts host-based antiviral targets against Chikungunya, Dengue and Zika viruses
S. Aller, A. Scott, M. Sarkar-Tyson, Orkun S. Soyer
2018Journal of the Royal Society Interface48 citations Open access
Semantic Scholar
Evolution of Taxis Responses in Virtual Bacteria: Non-Adaptive Dynamics
R. Goldstein, Orkun S. Soyer
2008PLoS Comput. Biol.44 citations Open access
Semantic Scholar
Metagenomics Strain Resolution on Assembly Graphs
C. Quince, S. Nurk, Sébastien Raguideau, Robert James +6 more
2020bioRxiv37 citations Open access
Semantic Scholar
Increasing sulfate levels show a differential impact on synthetic communities comprising different methanogens and a sulfate reducer
J. Chen, Matthew John Wade, J. Dolfing, Orkun S. Soyer
2019Journal of the Royal Society Interface37 citations Open access
Semantic Scholar
Evolutionary systems biology: What it is and why it matters
Orkun S. Soyer, Maureen A. O'Malley
2013Bioessays37 citations Open access
Semantic Scholar
Biodiversity–function relationships in methanogenic communities
P. Sierocinski, Florian Bayer, G. Yvon-Durocher, M. Burdon +6 more
2018Molecular Ecology36 citations Open access
Semantic Scholar
Nonlinear Dynamics in Gene Regulation Promote Robustness and Evolvability of Gene Expression Levels
A. Steinacher, D. Bates, O. Akman, Orkun S. Soyer
2016PLoS ONE34 citations Open access
Semantic Scholar
Unlimited multistability and Boolean logic in microbial signalling
Varun B. Kothamachu, Elisenda Feliu, L. Cardelli, Orkun S. Soyer
2015Journal of the Royal Society Interface34 citations Open access
Semantic Scholar
Phosphate Sink Containing Two-Component Signaling Systems as Tunable Threshold Devices
Munia Amin, Varun B. Kothamachu, Elisenda Feliu, B. Scharf +2 more
2014PLoS Comput. Biol.32 citations Open access
Semantic Scholar
Core signalling motif displaying multistability through multi-state enzymes
Song Feng, Meritxell Sáez, C. Wiuf, Elisenda Feliu +1 more
2016Journal of the Royal Society Interface31 citations Open access
Semantic Scholar
Bacterial Drug Tolerance under Clinical Conditions Is Governed by Anaerobic Adaptation but not Anaerobic Respiration
Claudia M. Hemsley, Jamie X. Luo, C. Andreae, C. S. Butler +2 more
2014Antimicrobial Agents and Chemotherapy31 citations Open access
Semantic Scholar
Parasites lead to evolution of robustness against gene loss in host signaling networks
M. Salathé, Orkun S. Soyer
2008Molecular Systems Biology30 citations Open access
Semantic Scholar
Thermodynamic modelling of synthetic communities predicts minimum free energy requirements for sulfate reduction and methanogenesis
H. Delattre, J. Chen, Matthew John Wade, Orkun S. Soyer
2019bioRxiv29 citations Open access
Semantic Scholar
Utility in Cell Signalling Response Dynamics of Phosphorelays Suggest Their Potential Rapid Response Subject Collections Response Dynamics of Phosphorelays Suggest Their Potential Utility in Cell Signalling
Attila Csikász-Nagy, L. Cardelli, Orkun S. Soyer
201029 citations
Semantic Scholar
Mapping epigenetic changes to the host cell genome induced by Burkholderia pseudomallei reveals pathogen-specific and pathogen-generic signatures of infection
Deniz Cizmeci, E. Dempster, Olivia L. Champion, S. Wagley +5 more
2016Scientific Reports27 citations Open access
Semantic Scholar
Ultrasensitive Negative Feedback Control: A Natural Approach for the Design of Synthetic Controllers
F. Montefusco, O. Akman, Orkun S. Soyer, D. Bates
2016PLoS ONE26 citations Open access
Semantic Scholar
Split Histidine Kinases Enable Ultrasensitivity and Bistability in Two-Component Signaling Networks
Munia Amin, S. L. Porter, Orkun S. Soyer
2013PLoS Comput. Biol.23 citations Open access
Semantic Scholar
Engineering microbial communities using thermodynamic principles and electrical interfaces.
Christian Zerfaß, J. Chen, Orkun S. Soyer
2018Current Opinion in Biotechnology22 citations Open access
Semantic Scholar
Phosphorelays Provide Tunable Signal Processing Capabilities for the Cell
Varun B. Kothamachu, Elisenda Feliu, C. Wiuf, L. Cardelli +1 more
2013PLoS Comput. Biol.22 citations Open access
Semantic Scholar
Interrogating metabolism as an electron flow system
Christian Zerfaß, Munehiro Asally, Orkun S. Soyer
2019Current Opinion in Systems Biology20 citations Open access
Semantic Scholar
Formation and emergent dynamics of spatially organized microbial systems
Kelsey Cremin, Sarah J. N. Duxbury, Jerko Rosko, Orkun S. Soyer
2023Interface Focus19 citations Open access
Semantic Scholar
A stable genetic polymorphism underpinning microbial syntrophy
T. Großkopf, S. Zenobi, M. Alston, Leighton Folkes +2 more
2016The ISME Journal19 citations Open access
Semantic Scholar
Adaptive dynamics with a single two-state protein
Attila Csikász-Nagy, Orkun S. Soyer
2008Journal of the Royal Society Interface19 citations Open access
Semantic Scholar
An integrated computational-experimental approach reveals Yersinia pestis genes essential across a narrow or a broad range of environmental conditions
Nicola J Senior, K. Sasidharan, R. Saint, A. Scott +10 more
2017BMC Microbiology18 citations Open access
Semantic Scholar
Can Single Cell Respiration be Measured by Scanning Electrochemical Microscopy (SECM)?
Kelsey Cremin, G. Meloni, D. Valavanis, Orkun S. Soyer +1 more
2023bioRxiv17 citations Open access
Semantic Scholar
Engineering and Biology: Counsel for a Continued Relationship
B. Calcott, A. Levy, Mark L. Siegal, Orkun S. Soyer +1 more
2015Biological Theory17 citations Open access
Semantic Scholar
Regulating the total level of a signaling protein can vary its dynamics in a range from switch like ultrasensitivity to adaptive responses
Orkun S. Soyer, Hiroyuki Kuwahara, Attila Csikász-Nagy
2009The FEBS Journal17 citations
Semantic Scholar
Manganese Oxide Biomineralization Provides Protection against Nitrite Toxicity in a Cell-Density-Dependent Manner
Christian Zerfaß, J. Christie-Oleza, Orkun S. Soyer
2018Applied and Environmental Microbiology15 citations Open access
Semantic Scholar
MetQy—an R package to query metabolic functions of genes and genomes
Andrea S. Martinez-Vernon, Fred F. Farrell, Orkun S. Soyer
2017bioRxiv14 citations Open access
Semantic Scholar
Enzyme Sequestration as a Tuning Point in Controlling Response Dynamics of Signalling Networks
Song Feng, Julien F. Ollivier, Orkun S. Soyer
2016PLoS Comput. Biol.14 citations Open access
Semantic Scholar
BioJazz: in silico evolution of cellular networks with unbounded complexity using rule-based modeling
Song Feng, Julien F. Ollivier, P. Swain, Orkun S. Soyer
2015Nucleic Acids Research14 citations Open access
Semantic Scholar
Evolution of response dynamics underlying bacterial chemotaxis
Orkun S. Soyer, Richard A. Goldstein
2011BMC Evolutionary Biology14 citations Open access
Semantic Scholar
Inhibiting the reproduction of SARS-CoV-2 through perturbations in human lung cell metabolic network
H. Delattre, K. Sasidharan, Orkun S. Soyer
2020Life Science Alliance13 citations Open access
Semantic Scholar
Evolutionary principles underlying structure and response dynamics of cellular networks.
A. Steinacher, Orkun S. Soyer
2012Advances in Experimental Medicine and Biology13 citations
Semantic Scholar
Duplicate retention in signalling proteins and constraints from network dynamics
Orkun S. Soyer, C. Creevey
2010Journal of Evolutionary Biology13 citations Open access
Semantic Scholar
The Promise of Evolutionary Systems Biology: Lessons from Bacterial Chemotaxis
Orkun S. Soyer
2010Science Signaling13 citations
Semantic Scholar
Niche formation and metabolic interactions contribute to stable diversity in a spatially structured cyanobacterial community
Sarah J. N. Duxbury, Sébastien Raguideau, Kelsey Cremin, Luke Richards +7 more
2025The ISME Journal12 citations Open access
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

T. Großkopf×6
Invite
T. Großkopf — researcher profile on SciRah
Christian Zerfaß×6
Invite
Christian Zerfaß — researcher profile on SciRah
Song Feng×5
Invite
Song Feng — researcher profile on SciRah
Kelsey Cremin×4
Invite
Kelsey Cremin — researcher profile on SciRah

Munehiro Asally

×4

Invite

Munehiro Asally — researcher profile on SciRah

Elisenda Feliu×4

Invite

Elisenda Feliu — researcher profile on SciRah

Sébastien Raguideau×3

Invite

Sébastien Raguideau — researcher profile on SciRah

Invite

P. Unwin — researcher profile on SciRah

Invite

M. Alston — researcher profile on SciRah

D. Swarbreck×3

Invite

D. Swarbreck — researcher profile on SciRah

Invite

O. Akman — researcher profile on SciRah

Varun B. Kothamachu×3

Invite

Varun B. Kothamachu — researcher profile on SciRah