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A. Lifshitz · SciRah

Researcher profile · Semantic Scholar

A. Lifshitz

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A. Lifshitz — researcher profile on SciRah

h-index: 19
Works: 35
Citations: 2,820

Most-cited papers

Dysfunctional CD8+ T cells form a proliferative, dynamically regulated compartment within human melanoma
Han-Jie Li, A. M. van der Leun, Ido Yofe, Yaniv Lubling +14 more
2018Cell1,057 citations Open access
Semantic Scholar
MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions
Yael Baran, A. Bercovich, Arnau Sebé-Pedrós, Yaniv Lubling +6 more
2019Genome Biology345 citations Open access
Semantic Scholar
Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq.
Arnau Sebé-Pedrós, Baptiste Saudemont, Elad Chomsky, Flora Plessier +11 more
2018Cell326 citations Open access
Semantic Scholar
The spatiotemporal program of zonal liver regeneration following acute injury.
S. Ben-Moshe, Tamar Veg, R. Manco, S. Dan +6 more
2022Cell Stem Cell181 citations Open access
Semantic Scholar
A single-embryo, single-cell time-resolved model for mouse gastrulation
M. Mittnenzweig, Yoav Mayshar, Saifeng Cheng, Raz Ben-Yair +11 more
2021Cell177 citations Open access
Semantic Scholar
Capturing pairwise and multi-way chromosomal conformations using chromosomal walks
P. Olivares-Chauvet, Zohar Mukamel, A. Lifshitz, Omer Schwartzman +5 more
2016Nature149 citations
Semantic Scholar
Single-cell analysis of clonal maintenance of transcriptional and epigenetic states in cancer cells
Z. Meir, Zohar Mukamel, Elad Chomsky, A. Lifshitz +1 more
2020Nature Genetics91 citations Open access
Semantic Scholar
Metacell-2: a divide-and-conquer metacell algorithm for scalable scRNA-seq analysis
O. Ben-Kiki, A. Bercovich, A. Lifshitz, A. Tanay
2022Genome Biology70 citations Open access
Semantic Scholar
DNA methylation landscapes of 1538 breast cancers reveal a replication-linked clock, epigenomic instability and cis-regulation
R. Batra, A. Lifshitz, A. T. Vidaković, Suet-Feung Chin +17 more
2021Nature Communications67 citations Open access
Semantic Scholar
Personalized lab test models to quantify disease potentials in healthy individuals
Netta Mendelson Cohen, Omer Schwartzman, Ram Jaschek, A. Lifshitz +5 more
2021Nature Medicine48 citations
Semantic Scholar
Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma.
Han-Jie Li, A. M. van der Leun, Ido Yofe, Yaniv Lubling +14 more
2020Cell42 citations Open access
Semantic Scholar
The intrinsic and extrinsic effects of TET proteins during gastrulation
Saifeng Cheng, M. Mittnenzweig, Yoav Mayshar, A. Lifshitz +12 more
2022Cell38 citations
Semantic Scholar
MetaCell: analysis of single cell RNA-seq data using k-NN graph partitions
Yael Baran, Arnau Sebé-Pedrós, Yaniv Lubling, A. Giladi +5 more
2018bioRxiv31 citations Open access
Semantic Scholar
Temporal BMP4 effects on mouse embryonic and extraembryonic development
R. Hadas, Hernan Rubinstein, M. Mittnenzweig, Y. Mayshar +12 more
2024Nature27 citations Open access
Semantic Scholar
Time-aligned hourglass gastrulation models in rabbit and mouse.
Yoav Mayshar, Ofir Raz, Saifeng Cheng, Raz Ben-Yair +7 more
2023Cell27 citations Open access
Semantic Scholar
Global DNA methylation reflects spatial heterogeneity and molecular evolution of lung adenocarcinomas
S. Dietz, A. Lifshitz, D. Kazdal, A. Harms +7 more
2018International Journal of Cancer26 citations Open access
Semantic Scholar
Modeling T cell temporal response to cancer immunotherapy rationalizes development of combinatorial treatment protocols
O. Barboy, A. Bercovich, Han-Jie Li, Y. Eyal-Lubling +17 more
2024Nature Cancer25 citations
Semantic Scholar
Single cell Hi-C identifies plastic chromosome conformations underlying the gastrulation enhancer landscape
N. Rappoport, Elad Chomsky, T. Nagano, Charlie Seibert +8 more
2023Nature Communications22 citations Open access
Semantic Scholar
Longitudinal machine learning uncouples healthy aging factors from chronic disease risks
Netta Mendelson Cohen, A. Lifshitz, Ram Jaschek, E. Rinott +4 more
2023Nature Aging19 citations
Semantic Scholar
SHAMAN: bin-free randomization, normalization and screening of Hi-C matrices
Netta Mendelson-Cohen, P. Olivares-Chauvet, Yaniv Lubling, Yael Baran +3 more
2017bioRxiv16 citations Open access
Semantic Scholar
Single cell analysis reveals dynamics of transposable element transcription following epigenetic de-repression
D. Brocks, Elad Chomsky, Zohar Mukamel, A. Lifshitz +1 more
2018bioRxiv12 citations Open access
Semantic Scholar
Combgap Promotes Ovarian Niche Development and Chromatin Association of EcR-Binding Regions in BR-C
Anna Hitrik, M. Popliker, Dana Gancz, Zohar Mukamel +4 more
2016PLoS Genetics11 citations Open access
Semantic Scholar
DNA methyltransferases 3A and 3B target specific sequences during mouse gastrulation.
Zohar Mukamel, A. Lifshitz, M. Mittnenzweig, Elad Chomsky +4 more
2022Nature Structural & Molecular Biology8 citations
Semantic Scholar
MCProj: metacell projection for interpretable and quantitative use of transcriptional atlases
O. Ben-Kiki, A. Bercovich, A. Lifshitz, Ofir Raz +2 more
2023Genome Biology4 citations Open access
Semantic Scholar
Cnidarian cell type diversity revealed by whole-organism single-cell RNA-seq analysis
Arnau Sebé-Pedrós, Elad Chomsky, Baptiste Saudememont, Marie-Pierre Mailhe +10 more
2017bioRxiv4 citations Open access
Semantic Scholar
A divide and conquer metacell algorithm for scalable scRNA-seq analysis
O. Ben-Kiki, A. Bercovich, A. Lifshitz, A. Tanay
2021bioRxiv3 citations Open access
Semantic Scholar
Neural stem cell epigenomes and fate bias are temporally coordinated during mouse cortical development
Yonatan Shapira, Florian Noack, S. Vangelisti, F. Chong +3 more
2026Genes & Development1 citations Open access
Semantic Scholar
IceQream: Quantitative chromosome accessibility analysis using physical TF models
A. Bercovich, A. Lifshitz, Michal Eldar, Saifeng Cheng +3 more
2025Nature Communications1 citations Open access
Semantic Scholar
Reciprocal, methylation-dependent binding of Zfp57 and Gzf1 safeguards Dlk1-Dio3 imprinting during developmental reprogramming
Arik Toren, Liron Hoffman, Irina Miodownik, Y. Mayshar +11 more
2026Nature Communications0 citations Open access
Semantic Scholar
Neural stem cell epigenomes and fate bias are temporally coordinated during corticogenesis
Yonatan Shapira, Florian Noack, S. Vangelisti, F. Chong +3 more
2025bioRxiv0 citations Open access
Semantic Scholar
Metacell projection for interpretable and quantitative use of transcriptional atlases
O. Ben-Kiki, A. Bercovich, A. Lifshitz, A. Tanay
2022bioRxiv0 citations Open access
Semantic Scholar
tanaylab/embflow: Initial release
A. Lifshitz
20210 citations
Semantic Scholar
Abstract PR04: Single-cell analysis illuminates dysfunctional CD8+ T cells as a proliferative, dynamically regulated compartment within human melanoma
Ido Yofe, Han-Jie Li, A. M. van der Leun, Yaniv Lubling +10 more
2020Oral Presentations - Proffered Abstracts0 citations
Semantic Scholar
Single-cell analysis of clonal maintenance of transcriptional and epigenetic states in cancer cells
Z. Meir, Zohar Mukamel, Elad Chomsky, A. Lifshitz +1 more
2020Nature Genetics0 citations Open access
Semantic Scholar
PO-386 Decoding the regulatory role and epiclonal dynamics of DNA methylation in 1482 breast tumours
R. Batra, Av Tufedgzic, S. Chin, A. Batra +6 more
2018ESMO Open0 citations Open access
Semantic Scholar

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