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Emmanuelle Lerat · SciRah

Researcher profile · Semantic Scholar

Emmanuelle Lerat

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Emmanuelle Lerat — researcher profile on SciRah

h-index: 26
Works: 60
Citations: 3,403

Most-cited papers

From Gene Trees to Organismal Phylogeny in Prokaryotes:The Case of the γ-Proteobacteria
Emmanuelle Lerat, V. Daubin, N. Moran
2003PLoS Biology433 citations Open access
Semantic Scholar
Evolutionary Origins of Genomic Repertoires in Bacteria
Emmanuelle Lerat, V. Daubin, H. Ochman, N. Moran
2005PLoS Biology366 citations Open access
Semantic Scholar
Examining bacterial species under the specter of gene transfer and exchange
H. Ochman, Emmanuelle Lerat, V. Daubin
2005Proceedings of the National Academy of Sciences of the United States of America223 citations Open access
Semantic Scholar
Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs
Emmanuelle Lerat
2010Heredity221 citations Open access
Semantic Scholar
The evolutionary history of quorum-sensing systems in bacteria.
Emmanuelle Lerat, N. Moran
2004Molecular biology and evolution194 citations Open access
Semantic Scholar
The source of laterally transferred genes in bacterial genomes
V. Daubin, Emmanuelle Lerat, G. Perrière
2003Genome Biology186 citations Open access
Semantic Scholar
Recognizing the pseudogenes in bacterial genomes
Emmanuelle Lerat, H. Ochman
2005Nucleic Acids Research178 citations Open access
Semantic Scholar
“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
M. Bailly-Bechet, Annabelle Haudry, Emmanuelle Lerat
2014Mobile DNA171 citations Open access
Semantic Scholar
TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes
Emmanuelle Lerat, Marie Fablet, Laurent Modolo, Hélène Lopez-Maestre +1 more
2016Nucleic Acids Research125 citations Open access
Semantic Scholar
Ψ-Φ: Exploring the outer limits of bacterial pseudogenes
Emmanuelle Lerat, H. Ochman
2004101 citations Open access
Semantic Scholar
An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their Choice
Tanguy Lallemand, M. Leduc, C. Landés, Carène Rizzon +1 more
2020Genes100 citations Open access
Semantic Scholar
A call for benchmarking transposable element annotation methods
Douglas R. Hoen, G. Hickey, G. Bourque, J. Casacuberta +14 more
2015Mobile DNA93 citations Open access
Semantic Scholar
Sequence divergence within transposable element families in the Drosophila melanogaster genome.
Emmanuelle Lerat, Carène Rizzon, C. Biémont
2003Genome Research93 citations Open access
Semantic Scholar
Psi-Phi: exploring the outer limits of bacterial pseudogenes.
Emmanuelle Lerat, H. Ochman
2004Genome Research71 citations
Semantic Scholar
UrQt: an efficient software for the Unsupervised Quality trimming of NGS data
Laurent Modolo, Emmanuelle Lerat
2015BMC Bioinformatics63 citations Open access
Semantic Scholar
Comparative analysis of transposable elements in the melanogaster subgroup sequenced genomes.
Emmanuelle Lerat, N. Burlet, C. Biémont, C. Vieira
2011Gene61 citations
Semantic Scholar
Population‐specific dynamics and selection patterns of transposable element insertions in European natural populations
Emmanuelle Lerat, Clément Goubert, S. Guirao-Rico, Miriam Merenciano +3 more
2019Molecular Ecology51 citations Open access
Semantic Scholar
Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes
Diamantis Sellis, F. Guérin, O. Arnaiz, W. Pett +13 more
2020bioRxiv46 citations Open access
Semantic Scholar
Codon Usage by Transposable Elements and Their Host Genes in Five Species
Emmanuelle Lerat, P. Capy, C. Biémont
2002Journal of Molecular Evolution43 citations
Semantic Scholar
Hypervariable and Highly Divergent Intron–Exon Organizations in the Chordate Oikopleura dioica
R. B. Edvardsen, Emmanuelle Lerat, A. Maeland, Mette Flåt +6 more
2004Journal of Molecular Evolution42 citations
Semantic Scholar
Microsporidian Genomes Harbor a Diverse Array of Transposable Elements that Demonstrate an Ancestry of Horizontal Exchange with Metazoans
N. Parisot, A. Pelin, Cyrielle Gasc, V. Polonais +10 more
2014Genome Biology and Evolution40 citations Open access
Semantic Scholar
Evolutionary history of LTR-retrotransposons among 20 Drosophila species
Nicolas Bargues, Emmanuelle Lerat
2017Mobile DNA38 citations Open access
Semantic Scholar
Is the evolution of transposable elements modular?
Emmanuelle Lerat, F. Brunet, C. Bazin, P. Capy
2004Genetica38 citations
Semantic Scholar
Reversing Gene Erosion - Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data
J. V. Earnest-DeYoung, Emmanuelle Lerat, B. Moret
2004Workshop on Algorithms in Bioinformatics35 citations Open access
Semantic Scholar
Influence of the transposable element neighborhood on human gene expression in normal and tumor tissues.
Emmanuelle Lerat, Marie Sémon
2007Gene31 citations
Semantic Scholar
Hijacking of Host Cellular Functions by an Intracellular Parasite, the Microsporidian Anncaliia algerae
Johan Panek, H. El Alaoui, Anne Moné, S. Urbach +10 more
2014PLoS ONE28 citations Open access
Semantic Scholar
On the Importance to Acknowledge Transposable Elements in Epigenomic Analyses
Emmanuelle Lerat, J. Casacuberta, C. Chaparro, C. Vieira
2019Genes27 citations Open access
Semantic Scholar
Codon usage and the origin of P elements.
Emmanuelle Lerat, C. Biémont, P. Capy
2000Molecular biology and evolution25 citations Open access
Semantic Scholar
Identification of expressed transposable element insertions in the sequenced genome of Drosophila melanogaster.
Marc Deloger, F. Cavalli, Emmanuelle Lerat, C. Biémont +2 more
2009Gene22 citations
Semantic Scholar
Specific Activation of an I-Like Element in Drosophila Interspecific Hybrids
E. A. Carnelossi, Emmanuelle Lerat, Hélène Henri, Sonia Martinez +2 more
2014Genome Biology and Evolution20 citations Open access
Semantic Scholar
A comparative analysis of the amounts and dynamics of transposable elements in natural populations of Drosophila melanogaster and Drosophila simulans.
C. Vieira, Marie Fablet, Emmanuelle Lerat, M. Boulesteix +6 more
2012Journal of Environmental Radioactivity20 citations
Semantic Scholar
Bmc Evolutionary Biology the Evolutionary Dynamics of the Helena Retrotransposon Revealed by Sequenced Drosophila Genomes
Adriana Granzotto, F. R. Lopes, Emmanuelle Lerat, C. Vieira +1 more
20 citations
Semantic Scholar
A New Genome-Wide Method to Track Horizontally Transferred Sequences: Application to Drosophila
Laurent Modolo, F. Picard, Emmanuelle Lerat
2014Genome Biology and Evolution19 citations Open access
Semantic Scholar
Exploiting the architecture and the features of the microsporidian genomes to investigate diversity and impact of these parasites on ecosystems
E. Peyretaillade, Delphine Boucher, Nicolas Parisot, Cyrielle Gasc +4 more
2014Heredity18 citations Open access
Semantic Scholar
Losing helena: The extinction of a drosophila line-like element
R. Rebollo, Emmanuelle Lerat, L. Kleine, C. Biémont +1 more
2008BMC Genomics17 citations Open access
Semantic Scholar
Genomic environment influences the dynamics of the tirant LTR retrotransposon in Drosophila
Marie Fablet, Emmanuelle Lerat, R. Rebollo, B. Horard +6 more
2009The FASEB Journal16 citations
Semantic Scholar
The relative abundance of dinucleotides in transposable elements in five species.
Emmanuelle Lerat, P. Capy, C. Biémont
2002Molecular biology and evolution15 citations Open access
Semantic Scholar
A bunch of fun-guys: the whole-genome view of yeast evolution.
H. Ochman, V. Daubin, Emmanuelle Lerat
2005Trends in Genetics14 citations
Semantic Scholar
Genes Devoid of Full-Length Transposable Element Insertions are Involved in Development and in the Regulation of Transcription in Human and Closely Related Species
Hussein Mortada, C. Vieira, Emmanuelle Lerat
2010Journal of Molecular Evolution13 citations
Semantic Scholar
Maintenance in the Chicken Genome of the Retroviral-like cENS Gene Family Specifically Expressed in Early Embryos
Emmanuelle Lerat, A. Birot, J. Samarut, A. Mey
2007Journal of Molecular Evolution13 citations
Semantic Scholar
The endogenous retrovirus ENS-1 provides active binding sites for transcription factors in embryonic stem cells that specify extra embryonic tissue
A. Mey, Hervé Acloque, Emmanuelle Lerat, S. Gounel +6 more
2012Retrovirology12 citations Open access
Semantic Scholar
Infra- and Transspecific Clues to Understanding the Dynamics of Transposable Elements
C. Vieira, Marie Fablet, Emmanuelle Lerat
200912 citations
Semantic Scholar
The transposable element environment of human genes is associated with histone and expression changes in cancer
Laura Grégoire, Annabelle Haudry, Emmanuelle Lerat
2016BMC Genomics11 citations Open access
Semantic Scholar
Does the Presence of Transposable Elements Impact the Epigenetic Environment of Human Duplicated Genes?
R. Lannes, Carène Rizzon, Emmanuelle Lerat
2019Genes8 citations Open access
Semantic Scholar
Recent Bioinformatic Progress to Identify Epigenetic Changes Associated to Transposable Elements
Emmanuelle Lerat
2022Frontiers in Genetics6 citations Open access
Semantic Scholar
The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes
A. Belkorchia, Cyrielle Gasc, V. Polonais, N. Parisot +7 more
2015PLoS ONE6 citations Open access
Semantic Scholar
Subcellular Localization of ENS-1/ERNI in Chick Embryonic Stem Cells
Sophie Blanc, F. Ruggiero, A. Birot, H. Acloque +5 more
2014PLoS ONE6 citations Open access
Semantic Scholar
The Transposable Element Environment of Human Genes Differs According to Their Duplication Status and Essentiality
Margot Correa, Emmanuelle Lerat, E. Birmelé, F. Samson +3 more
2021Genome Biology and Evolution5 citations Open access
Semantic Scholar
Repeat in Genomes: How and Why You Should Consider Them in Genome Analyses?
Emmanuelle Lerat
2019Encyclopedia of Bioinformatics and Computational Biology3 citations Open access
Semantic Scholar
Look4LTRs: a Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats
Anthony B. Garza, Emmanuelle Lerat, Hani Z. Girgis
2023bioRxiv2 citations Open access
Semantic Scholar

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