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B. Schwalb · SciRah

Researcher profile · Semantic Scholar

B. Schwalb

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B. Schwalb — researcher profile on SciRah

h-index: 21
Works: 35
Citations: 3,458

Most-cited papers

TT-seq maps the human transient transcriptome
B. Schwalb, Margaux Michel, B. Zacher, Katja Frühauf +4 more
2016Science527 citations Open access
Semantic Scholar
Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast
Christian Miller, B. Schwalb, K. Maier, D. Schulz +9 more
2011Molecular Systems Biology428 citations Open access
Semantic Scholar
Fine mapping of genome activation in bovine embryos by RNA sequencing
A. Graf, S. Krebs, V. Zakhartchenko, B. Schwalb +2 more
2014Proceedings of the National Academy of Sciences of the United States of America312 citations Open access
Semantic Scholar
Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation
Mai Sun, B. Schwalb, D. Schulz, Nicole Pirkl +6 more
2012Genome Research308 citations Open access
Semantic Scholar
Global analysis of eukaryotic mRNA degradation reveals Xrn1-dependent buffering of transcript levels.
Mai Sun, B. Schwalb, Nicole Pirkl, K. Maier +4 more
2013Molecules and Cells270 citations Open access
Semantic Scholar
The Implication of Early Chromatin Changes in X Chromosome Inactivation
J. J. Żylicz, Aurélie Bousard, Kristina Žumer, François Dossin +8 more
2018Cell258 citations Open access
Semantic Scholar
CDK9-dependent RNA polymerase II pausing controls transcription initiation
Saskia Gressel, B. Schwalb, T. Decker, Weihua Qin +3 more
2017eLife214 citations Open access
Semantic Scholar
Integrator is a genome-wide attenuator of non-productive transcription
Søren Lykke-Andersen, Kristina Žumer, E. Molska, Guifen Wu +6 more
2020bioRxiv128 citations Open access
Semantic Scholar
Selective Mediator-dependence of cell type-specifying transcription
Martin G. Jaeger, B. Schwalb, S. Mackowiak, Taras Velychko +15 more
2020Nature Genetics118 citations Open access
Semantic Scholar
Periodic mRNA synthesis and degradation co‐operate during cell cycle gene expression
Philipp Eser, Carina Demel, K. Maier, B. Schwalb +4 more
2014Molecular Systems Biology94 citations Open access
Semantic Scholar
CDK12 globally stimulates RNA polymerase II transcription elongation and carboxyl-terminal domain phosphorylation
Michael Tellier, J. Zaborowska, L. Caizzi, Eusra Mohammad +7 more
2020Nucleic Acids Research90 citations Open access
Semantic Scholar
The pause-initiation limit restricts transcription activation in human cells
Saskia Gressel, B. Schwalb, P. Cramer
2019Nature Communications88 citations Open access
Semantic Scholar
Architecture of the RNA polymerase II-Paf1C-TFIIS transcription elongation complex
You-Wei Xu, C. Bernecky, Chung-Tien Lee, K. Maier +5 more
2017Nature Communications87 citations Open access
Semantic Scholar
Efficient RNA polymerase II pause release requires U2 snRNP function.
L. Caizzi, S. Monteiro-Martins, B. Schwalb, Kseniia Lysakovskaia +5 more
2021Molecules and Cells86 citations Open access
Semantic Scholar
Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN
B. Zacher, Margaux Michel, B. Schwalb, P. Cramer +2 more
2016bioRxiv78 citations Open access
Semantic Scholar
Drosophila miR-277 controls branched-chain amino acid catabolism and affects lifespan
S. Esslinger, B. Schwalb, S. Helfer, K. Michalik +7 more
2013RNA Biology71 citations Open access
Semantic Scholar
Promoter Distortion and Opening in the RNA Polymerase II Cleft.
C. Dienemann, B. Schwalb, S. Schilbach, P. Cramer
2019Molecules and Cells70 citations Open access
Semantic Scholar
CDK7 kinase activity promotes RNA polymerase II promoter escape by facilitating initiation factor release.
Taras Velychko, Eusra Mohammad, Ivan Ferrer-Vicens, I. Parfentev +7 more
2024Molecules and Cells46 citations Open access
Semantic Scholar
Molecular Systems Biology Peer Review Process File Tt-seq Captures Enhancer Landscapes Immediately after T-cell Stimulation Editor: Maria Polychronidou Transaction Report
Margaux Michel, Carina Demel, B. Zacher, B. Schwalb +4 more
46 citations
Semantic Scholar
Mediator Phosphorylation Prevents Stress Response Transcription During Non-stress Conditions*
Christian Miller, I. Matic, K. Maier, B. Schwalb +5 more
2012Journal of Biological Chemistry42 citations Open access
Semantic Scholar
Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA)
B. Schwalb, D. Schulz, Mai Sun, B. Zacher +4 more
2012Bioinform.36 citations Open access
Semantic Scholar
Transcription activation depends on the length of the RNA polymerase II C‐terminal domain
A. Sawicka, G. Villamil, M. Lidschreiber, X. Darzacq +3 more
2021EMBO Journal18 citations Open access
Semantic Scholar
Promoter-proximal RNA polymerase II termination regulates transcription during human cell type transition
Kseniia Lysakovskaia, Arjun Devadas, B. Schwalb, M. Lidschreiber +1 more
2025Nature Structural & Molecular Biology17 citations Open access
Semantic Scholar
Transient transcriptome sequencing: computational pipeline to quantify genome-wide RNA kinetic parameters and transcriptional enhancer activity
G. Villamil, Leonhard Wachutka, P. Cramer, J. Gagneur +1 more
2019bioRxiv7 citations Open access
Semantic Scholar
Structure of a yeast closed complex (core CC1)
C. Dienemann, B. Schwalb, S. Schilbach, P. Cramer
20186 citations
Semantic Scholar
Author response: CDK9-dependent RNA polymerase II pausing controls transcription initiation
Saskia Gressel, B. Schwalb, T. Decker, Weihua Qin +3 more
20175 citations Open access
Semantic Scholar
RNA transcription and degradation of Alu retrotransposons depends on sequence features and evolutionary history
T. Baar, S. Dümcke, Saskia Gressel, B. Schwalb +3 more
2022G32 citations Open access
Semantic Scholar
Publisher Correction: Promoter-proximal RNA polymerase II termination regulates transcription during human cell type transition
Kseniia Lysakovskaia, Arjun Devadas, B. Schwalb, M. Lidschreiber +1 more
2025Nature Structural & Molecular Biology1 citations Open access
Semantic Scholar
Dynamic transcriptome analysis (DTA): kinetic modeling of synthesis and decay of mRNA transcripts upon perturbation in S.cerevisiae, S.pombe and D.melanogaster.
B. Schwalb
20121 citations
Semantic Scholar
Structure of a yeast closed complex with distorted DNA (core CCdist)
C. Dienemann, B. Schwalb, S. Schilbach, P. Cramer
20180 citations
Semantic Scholar
Structure of a yeast closed complex with distorted DNA (CCdist)
C. Dienemann, B. Schwalb, S. Schilbach, P. Cramer
20180 citations
Semantic Scholar
Monitoring mRNA metabolism
Margaux Michel, Carlo Bäjen, Carina Demel, M. Lidschreiber +4 more
20150 citations
Semantic Scholar
Dynamic transcriptome analysis (DTA)
B. Schwalb
20120 citations
Semantic Scholar
mutual feedback between mRNA synthesis and degradation Comparative dynamic transcriptome analysis ( cDTA ) reveals Material Supplemental
Mai Sun, B. Schwalb, D. Schulz, Nicole Pirkl +6 more
20120 citations
Semantic Scholar
Response Transcription During Non-stress Mediator Phosphorylation Prevents Stress Gene Regulation :
Christian Miller, I. Matic, K. Maier, B. Schwalb +5 more
20120 citations
Semantic Scholar

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