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Benjamin Linard · SciRah

Researcher profile · Semantic Scholar

Benjamin Linard

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Benjamin Linard — researcher profile on SciRah

h-index: 16
Works: 32
Citations: 1,333

Most-cited papers

A Comprehensive Benchmark Study of Multiple Sequence Alignment Methods: Current Challenges and Future Perspectives
J. Thompson, Benjamin Linard, O. Lecompte, O. Poch
2011PLoS ONE262 citations Open access
Semantic Scholar
Standardised Benchmarking in the Quest for Orthologs
A. Altenhoff, B. Boeckmann, S. Capella-Gutiérrez, D. Dalquen +23 more
2016Nature Methods215 citations Open access
Semantic Scholar
Lessons from genome skimming of arthropod‐preserving ethanol
Benjamin Linard, P. Arribas, C. Andújar, A. Crampton-Platt +1 more
2016Molecular Ecology Resources85 citations Open access
Semantic Scholar
Mitochondrial metagenomics reveals the ancient origin and phylodiversity of soil mites and provides a phylogeny of the Acari.
P. Arribas, C. Andújar, M. L. Moraza, Benjamin Linard +2 more
2019Molecular biology and evolution75 citations Open access
Semantic Scholar
OrthoInspector: comprehensive orthology analysis and visual exploration
Benjamin Linard, J. Thompson, O. Poch, O. Lecompte
2011BMC Bioinformatics75 citations Open access
Semantic Scholar
Detection and decay rates of prey and prey symbionts in the gut of a predator through metagenomics
D. P. Paula, Benjamin Linard, D. Andow, E. Sujii +2 more
2015Molecular Ecology Resources70 citations Open access
Semantic Scholar
KD4v: comprehensible knowledge discovery system for missense variant
Tien-Dao Luu, Alin-Mihai Rusu, Vincent Walter, Benjamin Linard +10 more
2012Nucleic Acids Res.66 citations Open access
Semantic Scholar
OrthoInspector 3.0: open portal for comparative genomics
Yannis Nevers, Arnaud Kress, Audrey Defosset, R. Ripp +4 more
2018Nucleic Acids Res.65 citations Open access
Semantic Scholar
Uncovering Trophic Interactions in Arthropod Predators through DNA Shotgun-Sequencing of Gut Contents
D. P. Paula, Benjamin Linard, A. Crampton-Platt, A. Srivathsan +6 more
2016PLoS ONE61 citations Open access
Semantic Scholar
Rapid alignment-free phylogenetic identification of metagenomic sequences
Benjamin Linard, Krister M. Swenson, F. Pardi
2018bioRxiv48 citations Open access
Semantic Scholar
The contribution of mitochondrial metagenomics to large-scale data mining and phylogenetic analysis of Coleoptera
Benjamin Linard, A. Crampton-Platt, J. Morinière, M. Timmermans +13 more
2018bioRxiv47 citations Open access
Semantic Scholar
Ketogenic diet exhibits neuroprotective effects in hippocampus but fails to prevent epileptogenesis in the lithium‐pilocarpine model of mesial temporal lobe epilepsy in adult rats
Benjamin Linard, A. Ferrandon, E. Koning, A. Nehlig +1 more
2010Epilepsia42 citations
Semantic Scholar
Metagenome Skimming of Insect Specimen Pools: Potential for Comparative Genomics
Benjamin Linard, A. Crampton-Platt, C. Gillett, M. Timmermans +1 more
2015Genome Biology and Evolution40 citations Open access
Semantic Scholar
Controversies in modern evolutionary biology: the imperative for error detection and quality control
F. Prosdocimi, Benjamin Linard, P. Pontarotti, O. Poch +1 more
2012BMC Genomics40 citations Open access
Semantic Scholar
Gearing up to handle the mosaic nature of life in the quest for orthologs
K. Forslund, Cécile Pereira, S. Capella-Gutiérrez, Alana Sousa da Silva +63 more
2017Bioinform.36 citations Open access
Semantic Scholar
OrthoInspector 2.0: Software and database updates
Benjamin Linard, Alexis Allot, Raphael Schneider, C. Morel +5 more
2015Bioinform.24 citations Open access
Semantic Scholar
Functional insights into the core-TFIIH from a comparative survey.
Florence Bedez, Benjamin Linard, Xavier Brochet, R. Ripp +4 more
2013Genomics16 citations Open access
Semantic Scholar
The mitochondrial genome of Iberobaenia (Coleoptera: Iberobaeniidae): first rearrangement of protein-coding genes in the beetles
C. Andújar, P. Arribas, Benjamin Linard, R. Kundrata +2 more
2017Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis15 citations Open access
Semantic Scholar
The mitogenome of Hydropsyche pellucidula (Hydropsychidae): first gene arrangement in the insect order Trichoptera
Benjamin Linard, P. Arribas, C. Andújar, A. Crampton-Platt +1 more
2017Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis11 citations
Semantic Scholar
PEWO: a collection of workflows to benchmark phylogenetic placement
Benjamin Linard, Nikolai Romashchenko, F. Pardi, Eric Rivals
2020Bioinform.10 citations
Semantic Scholar
EPIK: precise and scalable evolutionary placement with informative k-mers
Nikolai Romashchenko, Benjamin Linard, F. Pardi, Eric Rivals
2023Bioinform.7 citations Open access
Semantic Scholar
Phylogenetic diversity only weakly mitigates climate‐change‐driven biodiversity loss in insect communities
Zongxu Li, Benjamin Linard, A. Vogler, Douglas W. Yu +1 more
2022Molecular Ecology6 citations Open access
Semantic Scholar
New mitochondrial genomes of 39 soil dwelling Coleoptera from metagenome sequencing
C. Andújar, P. Arribas, Michal Motyka, Mathew Bocek +3 more
2019Mitochondrial DNA Part B: Resources6 citations Open access
Semantic Scholar
EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data
Benjamin Linard, Ngoc-Hoan Nguyen, F. Prosdocimi, O. Poch +1 more
2011Evolutionary bioinformatics online6 citations Open access
Semantic Scholar
Rapid screening and detection of inter-type viral recombinants using phylo-k-mers
G. Scholz, Benjamin Linard, Nikolai Romashchenko, Eric Rivals +1 more
2020bioRxiv4 citations Open access
Semantic Scholar
Development of evolutionary knowledge extraction methods and their application in biological complex systems. (Développement de méthodes évolutionnaires d'extraction de connaissance et application à des systèmes biologiques complexes)
Benjamin Linard
20121 citations Open access
Semantic Scholar
Controversies in modern evolutionary biology: the imperative for error detection and quality control
F. Prosdocimi, Benjamin Linard, P. Pontarotti, O. Poch +1 more
2012BMC Genomics1 citations Open access
Semantic Scholar
Computing Phylo-$k$k-Mers
Nikolai Romashchenko, Benjamin Linard, Eric Rivals, Fabio Pardi
2023IEEE ACM Trans. Comput. Biol. Bioinform.0 citations
Semantic Scholar
the effects of date and sequence data in phylodynamics
Cécile Ané, Maria Anisimova, N. Beerenwinkel, David +9 more
20220 citations
Semantic Scholar
Phylo k-mers: constructing phylogenetically-informed k-mers for phylogenetic placement and recombination detection
Nikolai Romashchenko, Benjamin Linard, F. Pardi, Eric Rivals
20200 citations
Semantic Scholar
Rapid alignment-free phylogenec placement via ancestral k-mers
Benjamin Linard, Krister M. Swenson, F. Pardi
20180 citations
Semantic Scholar
EvoKEN: evolutionary knowledge extraction in networks
Benjamin Linard, Ngoc Hung Nguyen, O. Lecompte, O. Poch +1 more
2017bioRxiv0 citations Open access
Semantic Scholar

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