Lee Sael

Most-cited papers

Protein-protein docking using region-based 3D Zernike descriptors
Vishwesh Venkatraman, Yifeng D. Yang, Lee Sael, D. Kihara
2009BMC Bioinformatics203 citations Open access
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Potential for Protein Surface Shape Analysis Using Spherical Harmonics and 3D Zernike Descriptors
Vishwesh Venkatraman, Lee Sael, D. Kihara
2009Cell Biochemistry and Biophysics91 citations
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Molecular surface representation using 3D Zernike descriptors for protein shape comparison and docking.
D. Kihara, Lee Sael, R. Chikhi, Juan Esquivel-Rodríguez
2011Current protein and peptide science90 citations
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3D-SURFER: software for high-throughput protein surface comparison and analysis
David La, Juan Esquivel-Rodríguez, Vishwesh Venkatraman, Bin Li +4 more
2009Bioinform.85 citations Open access
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Rapid comparison of properties on protein surface
Lee Sael, David La, Bin Li, R. Rustamov +1 more
2008Proteins: Structure, Function, and Bioinformatics83 citations Open access
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Procedia Computer Science
Lee Sael, Inah Jeon, U. Kang
201582 citations
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Personalized Ranking in Signed Networks Using Signed Random Walk with Restart
Jinhong Jung, Woojeong Jin, Lee Sael, U. Kang
2016Industrial Conference on Data Mining79 citations
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Detecting Local Ligand-Binding Site Similarity in Non-Homologous Proteins by Surface Patch Comparison
Lee Sael, D. Kihara
2012Proteins: Structure, Function, and Bioinformatics63 citations Open access
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SCouT: Scalable coupled matrix-tensor factorization - algorithm and discoveries
Byungsoo Jeon, Inah Jeon, Lee Sael, U. Kang
2016IEEE International Conference on Data Engineering61 citations
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Real-Time Ligand Binding Pocket Database Search Using Local Surface Descriptors
R. Chikhi, Lee Sael, D. Kihara
2010Proteins: Structure, Function, and Bioinformatics60 citations Open access
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MultiDefectNet: Multi-Class Defect Detection of Building Façade Based on Deep Convolutional Neural Network
Kisu Lee, Goopyo Hong, Lee Sael, Sanghyo Lee +1 more
202049 citations Open access
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Random Walk with Restart on Large Graphs Using Block Elimination
Jinhong Jung, Kijung Shin, Lee Sael, U. Kang
2016ACM Transactions on Database Systems41 citations
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High-Performance Tucker Factorization on Heterogeneous Platforms
Sejoon Oh, Namyong Park, Jun-Gi Jang, Lee Sael +1 more
2019IEEE Transactions on Parallel and Distributed Systems36 citations
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Structure- and Sequence-Based Function Prediction for Non-Homologous Proteins
Lee Sael, Meghana Chitale, D. Kihara
2012Journal of Structural and Functional Genomics35 citations Open access
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Binding Ligand Prediction for Proteins Using Partial Matching of Local Surface Patches
Lee Sael, D. Kihara
2010International Journal of Molecular Sciences34 citations Open access
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Scalable Tensor Mining
Lee Sael, Inah Jeon, U. Kang
2015Big Data Research28 citations
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Formyl‐coenzyme A (CoA):oxalate CoA‐transferase from the acidophile Acetobacter aceti has a distinctive electrostatic surface and inherent acid stability
E. A. Mullins, C. Starks, Julie A. Francois, Lee Sael +2 more
2012Protein Science26 citations Open access
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Improved protein surface comparison and application to low-resolution protein structure data
Lee Sael, D. Kihara
2010BMC Bioinformatics23 citations Open access
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Protein Surface Representation and Comparison: New Approaches in Structural Proteomics
Lee Sael, D. Kihara
201121 citations
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A missense variant in SHARPIN mediates Alzheimer’s disease-specific brain damages
Jun Young Park, Dongsoo Lee, J. Lee, Jungsoo Gim +29 more
2021Translational Psychiatry20 citations Open access
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VEST: Very Sparse Tucker Factorization of Large-Scale Tensors
Moonjeong Park, Jun-Gi Jang, Lee Sael
2019International Conference on Big Data and Smart Computing18 citations Open access
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DP-miRNA: An improved prediction of precursor microRNA using deep learning model
Jaya Thomas, Sonia Thomas, Lee Sael
2017International Conference on Big Data and Smart Computing18 citations
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Overview of integrative analysis methods for heterogeneous data
Jaya Thomas, Lee Sael
2015International Conference on Big Data and Smart Computing16 citations
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A mutation profile for top-k patient search exploiting Gene-Ontology and orthogonal non-negative matrix factorization
Sungchul Kim, Lee Sael, Hwanjo Yu
2015Bioinform.16 citations Open access
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Characterization and Classification of Local Protein Surfaces Using Self-Organizing Map
Lee Sael, D. Kihara
2010International Journal of Knowledge Discovery in Bioinformatics15 citations
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Review on Graph Clustering and Subgraph Similarity Based Analysis of Neurological Disorders
Jaya Thomas, Dongmin Seo, Lee Sael
2016International Journal of Molecular Sciences14 citations Open access
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Data/Feature Distributed Stochastic Coordinate Descent for Logistic Regression
Dongyeop Kang, Woosang Lim, Kijung Shin, Lee Sael +1 more
2014International Conference on Information and Knowledge Management14 citations
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Fast and accurate pseudoinverse with sparse matrix reordering and incremental approach
Jinhong Jung, Lee Sael
2020Machine-mediated learning13 citations Open access
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GIFT: Guided and Interpretable Factorization for Tensors with an application to large-scale multi-platform cancer analysis
Jungwoo Lee, Sejoon Oh, Lee Sael
2018Bioinform.13 citations Open access
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Mass Spectrometry Coupled Experiments and Protein Structure Modeling Methods
Jaewoo Pi, Lee Sael
2013International Journal of Molecular Sciences13 citations Open access
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PS-MCL: parallel shotgun coarsened Markov clustering of protein interaction networks
Yongsub Lim, In-Jae Yu, Dongmin Seo, U. Kang +1 more
2019BMC Bioinformatics12 citations Open access
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Identifying Cancer Subtypes based on Somatic Mutation Profile
Sungchul Kim, Lee Sael, Hwanjo Yu
2014Data and Text Mining in Bioinformatics10 citations
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3D-SURFER 2.0: web platform for real-time search and characterization of protein surfaces.
Y. Xiong, Juan Esquivel-Rodríguez, Lee Sael, D. Kihara
2014Methods in molecular biology10 citations
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CTD: Fast, accurate, and interpretable method for static and dynamic tensor decompositions
Jungwoo Lee, Dongjin Choi, Lee Sael
2017PLoS ONE9 citations Open access
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Constructing patch-based ligand-binding pocket database for predicting function of proteins
Lee Sael, D. Kihara
2012BMC Bioinformatics9 citations Open access
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Protein Binding Ligand Prediction Using Moments-Based Methods
R. Chikhi, Lee Sael, D. Kihara
20119 citations
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Next Generation Business Intelligence and Analytics: A Survey
Q. D. Vo, Jaya Thomas, Shinyoung Cho, Pradipta De +2 more
2017arXiv.org8 citations
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Mining billion-scale tensors: algorithms and discoveries
Inah Jeon, E. Papalexakis, C. Faloutsos, Lee Sael +1 more
2016The VLDB journal8 citations
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Deep Neural Network Based Precursor microRNA Prediction on Eleven Species
Jaya Thomas, Lee Sael
2017arXiv.org7 citations
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Maximizing information through multiple kernel-based heterogeneous data integration and applications to ovarian cancer
Jaya Thomas, Lee Sael
2016International Conference on Emerging Databases7 citations
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Knowledge distillation meets recommendation: collaborative distillation for top-N recommendation
Jae-woong Lee, Minjin Choi, Lee Sael, Hyunjung Shim +1 more
2022Knowledge and Information Systems6 citations
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EDiT: Interpreting Ensemble Models via Compact Soft Decision Trees
Jaemin Yoo, Lee Sael
2019Industrial Conference on Data Mining6 citations
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Feature versus Raw Sequence: Deep Learning Comparative Study on Predicting Pre-miRNA
Jaya Thomas, Sonia Thomas, Lee Sael
2017arXiv.org6 citations
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Graphical Models for Protein Function and Structure Prediction
Mingjie Tang, Ke-An-Ming Tan, Xi Tan, Lee Sael +3 more
20136 citations
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Local surface shape-based protein function prediction using Zernike descriptors
D. Kihara, Lee Sael, R. Chikhi
20096 citations Open access
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Gaussian Soft Decision Trees for Interpretable Feature-Based Classification
Jae-Joon Yoo, Lee Sael
2021Pacific-Asia Conference on Knowledge Discovery and Data Mining5 citations
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Impact of structural prior knowledge in SNV prediction: Towards causal variant finding in rare disease
Vasundhara Dehiya, Jaya Thomas, Lee Sael
2018PLoS ONE5 citations Open access
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Multi-kernel LS-SVM based integration bio-clinical data analysis and application to ovarian cancer
Jaya Thomas, Lee Sael
2017International Journal of Data Mining and Bioinformatics4 citations
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Large-scale tucker Tensor factorization for sparse and accurate decomposition
Jun-Gi Jang, Moonjeong Park, Jongwuk Lee, Lee Sael
2022Journal of Supercomputing3 citations
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Towards Accurate and Certain Molecular Properties Prediction
KyungPyo Ham, JeongNoh Yoon, Lee Sael
2022Information and Communication Technology Convergence3 citations
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