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Yury V. Kondrakhin · SciRah

Researcher profile · Semantic Scholar

Yury V. Kondrakhin

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Yury V. Kondrakhin — researcher profile on SciRah

h-index: 10
Works: 30
Citations: 746

Most-cited papers

GTRD: an integrated view of transcription regulation
S. Kolmykov, I. Yevshin, M. Kulyashov, R. Sharipov +5 more
2020Nucleic Acids Res.245 citations Open access
Semantic Scholar
GTRD: a database on gene transcription regulation—2019 update
I. Yevshin, R. Sharipov, S. Kolmykov, Yury V. Kondrakhin +1 more
2018Nucleic Acids Res.234 citations Open access
Semantic Scholar
Eukaryotic promoter recognition by binding sites for transcription factors
Yury V. Kondrakhin, A. Kel, N. Kolchanov, A. G. Romashchenko +1 more
1995Comput. Appl. Biosci.72 citations
Semantic Scholar
BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data
F. Kolpakov, I. Akberdin, Timur A. Kashapov, L. Kiselev +9 more
2019Nucleic Acids Res.49 citations Open access
Semantic Scholar
Integrated databases and computer systems for studying eukaryotic gene expression
N. Kolchanov, M. Ponomarenko, A. S. Frolov, E. A. Ananko +18 more
1999Bioinform.23 citations Open access
Semantic Scholar
Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences
A. Kel, Yury V. Kondrakhin, Ph. A. Kolpakov, O. Kel +4 more
1995Intelligent Systems in Molecular Biology19 citations
Semantic Scholar
CYCLONET—an integrated database on cell cycle regulation and carcinogenesis
F. Kolpakov, V. Poroikov, R. Sharipov, Yury V. Kondrakhin +4 more
2007Nucleic Acids Res.17 citations Open access
Semantic Scholar
Construction of a generalized consensus matrix for recognition of vertebrate pre-mRNA 3'-terminal processing sites
Yury V. Kondrakhin, V. V. Shamin, N. Kolchanov
1994Comput. Appl. Biosci.15 citations
Semantic Scholar
GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome
N. Kolchanov, M. Ponomarenko, A. Kel, Yury V. Kondrakhin +21 more
1998Intelligent Systems in Molecular Biology14 citations
Semantic Scholar
Identification of Differentially Expressed Genes by Meta-Analysis of Microarray Data on Breast Cancer
Yury V. Kondrakhin, R. Sharipov, A. Kel, F. Kolpakov
2008Silico Biol.11 citations
Semantic Scholar
BioUML—towards a universal research platform
F. Kolpakov, I. Akberdin, I. Kiselev, S. Kolmykov +9 more
2022Nucleic Acids Res.7 citations Open access
Semantic Scholar
RiboSeqDB – a repository of selected human and mouse ribosome footprint and RNA-seq data
R. Sharipov, I. Yevshin, Yury V. Kondrakhin, O. A. Volkova
20147 citations Open access
Semantic Scholar
PROANAL version 2: multifunctional program for analysis of multiple protein sequence alignments and for studying the structure--activity relationships in protein families
A. Eroshkin, V. Fomin, P. Zhilkin, V. Ivanisenko +1 more
1995Comput. Appl. Biosci.7 citations
Semantic Scholar
Population size estimation for quality control of ChIP-Seq datasets
S. Kolmykov, Yury V. Kondrakhin, I. Yevshin, R. Sharipov +2 more
2019PLoS ONE5 citations Open access
Semantic Scholar
Assessment of translational importance of mammalian mRNA sequence features based on Ribo-Seq and mRNA-Seq data
O. A. Volkova, Yury V. Kondrakhin, I. Yevshin, T. Valeev +1 more
2016J. Bioinform. Comput. Biol.4 citations
Semantic Scholar
Prediction of protein-DNA interactions of transcription factors linking proteomics and transcriptomics data
Yury V. Kondrakhin, T. Valeev, R. Sharipov, I. Yevshin +2 more
2016EuPA Open Proteomics4 citations Open access
Semantic Scholar
Prediction of nonsmall cell lung cancer sensitivity to cisplastin and paclitaxel based on marker gene expression
U. Boyarskikh, Yury V. Kondrakhin, I. Yevshin, R. Sharipov +7 more
2011Molecular Biology4 citations
Semantic Scholar
Meta-analysis of ChIP-seq Datasets Through the Rank Aggregation Approach
S. Kolmykov, Yury V. Kondrakhin, R. Sharipov, Ivan S. Yevshi +2 more
20202020 Cognitive Sciences, Genomics and Bioinformatics (CSGB)3 citations
Semantic Scholar
Comparative analysis of protein-coding and long non-coding transcripts based on RNA sequence features
O. A. Volkova, Yury V. Kondrakhin, Timur A. Kashapov, R. Sharipov
2018J. Bioinform. Comput. Biol.3 citations
Semantic Scholar
Detecting direct correlations between positions in multiple alignments of amino acid sequences
D. Afonnikov, Yury V. Kondrakhin, I. Titov, N. Kolchanov
1997German Conference on Bioinformatics2 citations
Semantic Scholar
REVEALING CORRELATED AMINO ACID POSITIOL IN THE DNA-BINDING REGIONS OF THECREB AND AP-1 TRANSCRIPTION FACTOR FAMILIES
D. Afonnikov, Yury V. Kondrakhin, I. Titov
19972 citations
Semantic Scholar
Correlations between Sequence Features of Yeast Genes Functional Regions and the Level of Expression
A. G. Pichueva, A. Kochetov, L. Milanesi, Yury V. Kondrakhin +1 more
20041 citations
Semantic Scholar
Computer analysis of the structure of transcription factor binding sites
A. Kel, Yury V. Kondrakhin, Ph. A. Kolpakov, M. Ponomarenko +2 more
19951 citations
Semantic Scholar
Assessment of transcriptional importance of cell line-specific features based on GTRD and FANTOM5 data
R. Sharipov, Yury V. Kondrakhin, A. Ryabova, I. Yevshin +1 more
2020PLoS ONE0 citations Open access
Semantic Scholar
Estimation of translational importance of mammalian mRNA nucleotide sequence characteristics based on ribosome profiling data
O. A. Volkova, Yury V. Kondrakhin, R. Sharipov
20170 citations Open access
Semantic Scholar
Toolkit for ChIP-Seq based comparative analysis of the PWM methods for prediction of transcription factor binding sites
Yury V. Kondrakhin, T. Valeev, R. Sharipov, I. Yevshin +1 more
20140 citations Open access
Semantic Scholar
Recognition of interferon-inducible sites, promoters, and enhancers
E. A. Ananko, Yury V. Kondrakhin, T. I. Merkulova, Nikolay A. Kolchanov
2007BMC Bioinformatics0 citations Open access
Semantic Scholar
Statistical Analysis of Microarray Data: Identification and Classification of Yeast Cell Cycle Genes
Yury V. Kondrakhin, O. Podkolodnaya, A. Kochetov, G. Erokhin +1 more
20040 citations
Semantic Scholar
Computer Analysis and Recognition of the Transcription Regulatory Elements in Eukaryotic Genomes
Yury V. Kondrakhin, F. Kolpakov, A. Kel, N. Kolchanov +1 more
1996German Conference on Bioinformatics0 citations
Semantic Scholar
Identiﬁcation of Differentially Expressed Genes by Meta-Analysis of Microarray Data on Breast Cancer
Yury V. Kondrakhin, R. Sharipov, A. E. Kel, F. A. Kolpakov
0 citations
Semantic Scholar

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