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K. Yamasaki · SciRah

Researcher profile · Semantic Scholar

K. Yamasaki

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K. Yamasaki — researcher profile on SciRah

h-index: 28
Works: 103
Citations: 3,268

Most-cited papers

A novel mode of DNA recognition by a β‐sheet revealed by the solution structure of the GCC‐box binding domain in complex with DNA
Mark D. Allen, K. Yamasaki, M. Ohme-Takagi, M. Tateno +1 more
1998EMBO Journal491 citations Open access
Semantic Scholar
10 residue folded peptide designed by segment statistics.
S. Honda, K. Yamasaki, Yoshito Sawada, H. Morii
2004Structure322 citations Open access
Semantic Scholar
A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors.
K. Yamasaki, T. Kigawa, M. Inoue, M. Tateno +14 more
2004Journal of Molecular Biology276 citations
Semantic Scholar
DNA-binding domains of plant-specific transcription factors: structure, function, and evolution.
K. Yamasaki, T. Kigawa, M. Seki, K. Shinozaki +1 more
2013Trends in Plant Science251 citations
Semantic Scholar
Solution Structure of an Arabidopsis WRKY DNA Binding Domainw⃞
K. Yamasaki, T. Kigawa, M. Inoue, M. Tateno +13 more
2005The Plant Cell Online231 citations Open access
Semantic Scholar
Solution Structure of the B3 DNA Binding Domain of the Arabidopsis Cold-Responsive Transcription Factor RAV1w⃞
K. Yamasaki, T. Kigawa, M. Inoue, M. Tateno +14 more
2004The Plant Cell Online129 citations Open access
Semantic Scholar
Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs.
Dong-Yun Hao, K. Yamasaki, A. Sarai, M. Ohme-Takagi
2002Biochemistry119 citations
Semantic Scholar
Structural Basis for Sequence-specific DNA Recognition by an Arabidopsis WRKY Transcription Factor*
K. Yamasaki, T. Kigawa, S. Watanabe, M. Inoue +4 more
2012Journal of Biological Chemistry108 citations Open access
Semantic Scholar
Structures and evolutionary origins of plant-specific transcription factor DNA-binding domains.
K. Yamasaki, T. Kigawa, M. Inoue, S. Watanabe +4 more
2008Plant physiology and biochemistry : PPB101 citations
Semantic Scholar
Solution structure of the major DNA-binding domain of Arabidopsis thaliana ethylene-insensitive3-like3.
K. Yamasaki, T. Kigawa, M. Inoue, T. Yamasaki +11 more
2005Journal of Molecular Biology83 citations
Semantic Scholar
Mortalin sensitizes human cancer cells to MKT-077-induced senescence.
C. Deocaris, Nashi Widodo, B. Shrestha, K. Kaur +4 more
2007Cancer Letters81 citations
Semantic Scholar
Target identification reveals lanosterol synthase as a vulnerability in glioma
Richard E. Phillips, Yan-Hong Yang, Ryan C. Smith, Bonne M. Thompson +12 more
2019Proceedings of the National Academy of Sciences of the United States of America59 citations Open access
Semantic Scholar
Folding pathway of Escherichia coli ribonuclease HI: a circular dichroism, fluorescence, and NMR study.
K. Yamasaki, K. Ogasahara, Katsuhide Yutani, Motohisa Oobatake +1 more
1995Biochemistry58 citations
Semantic Scholar
Mutations that abolish the ability of Ha-Ras to associate with Raf-1.
M. Shirouzu, H. Koide, J. Fujita-Yoshigaki, H. Oshio +6 more
1994Oncogene57 citations
Semantic Scholar
An Arabidopsis SBP‐domain fragment with a disrupted C‐terminal zinc‐binding site retains its tertiary structure
K. Yamasaki, T. Kigawa, M. Inoue, T. Yamasaki +11 more
2006FEBS Letters46 citations Open access
Semantic Scholar
Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1
K. Yamasaki, T. Akiba, T. Yamasaki, K. Harata
2007Nucleic Acids Research44 citations Open access
Semantic Scholar
Development of new fusion proteins for visualizing amyloid-β oligomers in vivo
T. Ochiishi, Motomichi Doi, K. Yamasaki, K. Hirose +6 more
2016Scientific Reports40 citations Open access
Semantic Scholar
Identification of the metal ion binding site on an RNA motif from hammerhead ribozymes using (15)N NMR spectroscopy.
Yoshiyuki Tanaka, C. Kojima, E. Morita, Y. Kasai +4 more
2002Journal of the American Chemical Society39 citations
Semantic Scholar
Structural and sequence comparisons arising from the solution structure of the transcription elongation factor NusG from Thermus thermophilus
P. Reay, K. Yamasaki, T. Terada, S. Kuramitsu +2 more
2004Proteins: Structure, Function, and Bioinformatics37 citations
Semantic Scholar
Cell-free synthesis of zinc-binding proteins
T. Matsuda, T. Kigawa, S. Koshiba, M. Inoue +5 more
2007Journal of Structural and Functional Genomics34 citations
Semantic Scholar
Molecular Structure and Novel DNA Binding Sites Located in Loops of Flap Endonuclease-1 from Pyrococcus horikoshii *
E. Matsui, K. Musti, J. Abe, K. Yamasaki +2 more
2002Journal of Biological Chemistry33 citations Open access
Semantic Scholar
Solution structure of an extracellular domain containing the WSxWS motif of the granulocyte colony-stimulating factor receptor and its interaction with ligand
K. Yamasaki, Shoko Naito, H. Anaguchi, T. Ohkubo +1 more
1997Nature Structural Biology33 citations
Semantic Scholar
DNA recognition by β‐sheets
M. Tateno, K. Yamasaki, N. Amano, J. Kakinuma +3 more
199733 citations
Semantic Scholar
Stress chaperones, mortalin, and pex19p mediate 5-aza-2' deoxycytidine-induced senescence of cancer cells by DNA methylation-independent pathway.
Nashi Widodo, C. Deocaris, K. Kaur, Kamrul Hasan +6 more
2007The journals of gerontology. Series A, Biological sciences and medical sciences30 citations
Semantic Scholar
Ligand binding domain of granulocyte colony-stimulating factor receptor.
Osamu Hiraoka, Hiroyuki Anaguchi, K. Yamasaki, R. Fukunaga +2 more
1994Journal of Biological Chemistry30 citations
Semantic Scholar
Comprehensive analysis of PPARγ agonist activities of stereo-, regio-, and enantio-isomers of hydroxyoctadecadienoic acids
A. Umeno, M. Sakashita, Sakiko Sugino, Kazutoshi Murotomi +8 more
2020Bioscience Reports28 citations Open access
Semantic Scholar
Solution Structure and DNA-binding Mode of the Matrix Attachment Region-binding Domain of the Transcription Factor SATB1 That Regulates the T-cell Maturation*
H. Yamaguchi, M. Tateno, K. Yamasaki
2006Journal of Biological Chemistry28 citations Open access
Semantic Scholar
Solution Structure of the B 3 DNA Binding Domain of the Arabidopsis Cold-Responsive Transcription Factor RAV 1
K. Yamasaki, T. Kigawa, M. Inoue, M. Tateno +14 more
200426 citations
Semantic Scholar
Effect of glycosylation on cis/trans isomerization of prolines in IgA1-hinge peptide.
Y. Narimatsu, T. Kubota, Sanae Furukawa, H. Morii +2 more
2010Journal of the American Chemical Society25 citations
Semantic Scholar
Ligand Binding Characteristics of the Carboxyl-terminal Domain of the Cytokine Receptor Homologous Region of the Granulocyte Colony-stimulating Factor Receptor (*)
H. Anaguchi, O. Hiraoka, K. Yamasaki, Shoko Naito +1 more
1995Journal of Biological Chemistry24 citations Open access
Semantic Scholar
Glycerol stimulates innate chaperoning, proteasomal and stress-resistance functions: implications for geronto-manipulation
C. Deocaris, Syuichi Takano, D. Priyandoko, Zeenia Kaul +5 more
2008Biogerontology (Dordrecht)23 citations
Semantic Scholar
Site-directed mutagenesis, fluorescence, and two-dimensional NMR studies on microenvironments of effector region aromatic residues of human c-Ha-Ras protein.
K. Yamasaki, M. Shirouzu, Y. Muto, J. Fujita-Yoshigaki +6 more
1994Biochemistry23 citations
Semantic Scholar
Overcoming the blood–brain barrier by Annexin A1-binding peptide to target brain tumours
M. Nonaka, Misa Suzuki-Anekoji, J. Nakayama, Hideaki Mabashi-Asazuma +16 more
2020British Journal of Cancer22 citations Open access
Semantic Scholar
Nature of the chemical bond formed with the structural metal ion at the A9/G10.1 motif derived from hammerhead ribozymes.
Yoshiyuki Tanaka, Y. Kasai, S. Mochizuki, A. Wakisaka +9 more
2004Journal of the American Chemical Society21 citations
Semantic Scholar
A modified sensor chip for surface plasmon resonance enables a rapid determination of sequence specificity of DNA‐binding proteins
Dong-Yun Hao, M. Ohme-Takagi, K. Yamasaki
2003FEBS Letters21 citations
Semantic Scholar
Solution structure of the N‐terminal domain of the archaeal D‐family DNA polymerase small subunit reveals evolutionary relationship to eukaryotic B‐family polymerases
K. Yamasaki, Yuji Urushibata, T. Yamasaki, F. Arisaka +1 more
2010FEBS Letters19 citations Open access
Semantic Scholar
Enhanced affinity of racemic phosphorothioate DNA with transcription factor SATB1 arising from diastereomer-specific hydrogen bonds and hydrophobic contacts
K. Yamasaki, Yukie Akutsu, T. Yamasaki, M. Miyagishi +1 more
2020Nucleic Acids Research17 citations Open access
Semantic Scholar
The trimeric solution structure and fucose-binding mechanism of the core fucosylation-specific lectin PhoSL
K. Yamasaki, T. Yamasaki, H. Tateno
2018Scientific Reports14 citations Open access
Semantic Scholar
Geroprotection by Glycerol
C. Deocaris, B. Shrestha, D. C. Kraft, K. Yamasaki +3 more
2006Annals of the New York Academy of Sciences14 citations
Semantic Scholar
Tracing Primordial Protein Evolution through Structurally Guided Stepwise Segment Elongation*
Hideki Watanabe, K. Yamasaki, S. Honda
2013Journal of Biological Chemistry13 citations Open access
Semantic Scholar
Structural and Functional Differences between Mouse Mot‐1 and Mot‐2 Proteins That Differ in Two Amino Acids
C. Deocaris, K. Yamasaki, Sunil C. Kaul, R. Wadhwa
2006Annals of the New York Academy of Sciences13 citations
Semantic Scholar
Pressure-denatured state of Escherichia coli ribonuclease HI as monitored by Fourier transform infrared and NMR spectroscopy.
K. Yamasaki, Y. Taniguchi, N. Takeda, Kayoko Nakano +3 more
1998Biochemistry13 citations
Semantic Scholar
Biochemical and structural features of extracellular vesicle-binding RNA aptamers
Kazuyoshi Murakami, Jing Zhao, K. Yamasaki, M. Miyagishi
2017Biomedical Reports11 citations Open access
Semantic Scholar
DNA recognition by beta-sheets.
M. Tateno, K. Yamasaki, N. Amano, J. Kakinuma +3 more
1997Biopolymers11 citations
Semantic Scholar
The combination of sequence-specific and nonspecific DNA-binding modes of transcription factor SATB1.
K. Yamasaki, T. Yamasaki
2016Biochemical Journal10 citations
Semantic Scholar
Core fucose‐specific Pholiota squarrosa lectin (PhoSL) as a potent broad‐spectrum inhibitor of SARS‐CoV‐2 infection
K. Yamasaki, N. Adachi, M. M. Ngwe Tun, Akihito Ikeda +8 more
2022The FEBS Journal9 citations Open access
Semantic Scholar
Analysis of ATP and AMP binding to a DNA aptamer and its imidazole-tethered derivatives by surface plasmon resonance.
Jing Zhao, Satoshi Katsube, J. Yamamoto, K. Yamasaki +2 more
2015In Analysis9 citations
Semantic Scholar
Development of an orally-administrable tumor vasculature-targeting therapeutic using annexin A1-binding D-peptides
M. Nonaka, Hideaki Mabashi-Asazuma, D. Jarvis, K. Yamasaki +9 more
2020bioRxiv8 citations Open access
Semantic Scholar
Crystal structures of FMN‐bound and FMN‐free forms of dihydroorotate dehydrogenase from Trypanosoma brucei
T. Kubota, Osamu Tani, Tomohiko Yamaguchi, I. Namatame +3 more
2018FEBS Open Bio8 citations Open access
Semantic Scholar
An NMR Biochemical Assay for Fragment-Based Drug Discovery: Evaluation of an Inhibitor Activity on Spermidine Synthase of Trypanosoma cruzi.
K. Yamasaki, Osamu Tani, Y. Tateishi, E. Tanabe +4 more
2016Journal of Medicinal Chemistry8 citations Open access
Semantic Scholar

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