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F. Ronquist · SciRah

Researcher profile · Semantic Scholar

F. Ronquist

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F. Ronquist — researcher profile on SciRah

h-index: 57
Works: 200
Citations: 104K

Most-cited papers

Xenacoelomorpha is the sister group to Nephrozoa
J. Cannon, Bruno C. Vellutini, J. Smith, F. Ronquist +2 more
2016Nature343 citations Open access
Semantic Scholar
Automated Taxonomic Identification of Insects with Expert-Level Accuracy Using Effective Feature Transfer from Convolutional Networks
Miroslav Valan, K. Makónyi, A. Maki, D. Vondráček +1 more
2019Systematic Biology172 citations Open access
Semantic Scholar
Towards Large-Scale Integrative Taxonomy (LIT): Resolving the Data Conundrum for Dark Taxa
Emily A. Hartop, A. Srivathsan, F. Ronquist, R. Meier
2022Systematic Biology132 citations Open access
Semantic Scholar
The Swedish Malaise Trap Project: A 15 Year Retrospective on a Countrywide Insect Inventory
D. Karlsson, Emily A. Hartop, M. Forshage, M. Jaschhof +1 more
2020Biodiversity Data Journal116 citations Open access
Semantic Scholar
New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods
D. Marquina, A. Andersson, F. Ronquist
2018bioRxiv107 citations Open access
Semantic Scholar
Closing the gap between rocks and clocks using total-evidence dating
F. Ronquist, N. Lartillot, M. Phillips
2016Philosophical Transactions of the Royal Society B: Biological Sciences105 citations Open access
Semantic Scholar
The effect of ethanol concentration on the morphological and molecular preservation of insects for biodiversity studies
D. Marquina, M. Buczek, F. Ronquist, P. Łukasik
2020bioRxiv98 citations Open access
Semantic Scholar
Establishing arthropod community composition using metabarcoding: Surprising inconsistencies between soil samples and preservative ethanol and homogenate from Malaise trap catches
D. Marquina, R. Esparza-Salas, Tomas V. Roslin, F. Ronquist
2019Molecular Ecology Resources85 citations Open access
Semantic Scholar
A mixed relaxed clock model
N. Lartillot, M. Phillips, F. Ronquist
2016Philosophical Transactions of the Royal Society B: Biological Sciences62 citations Open access
Semantic Scholar
Completing Linnaeus’s inventory of the Swedish insect fauna: Only 5,000 species left?
F. Ronquist, M. Forshage, Sibylle Häggqvist, D. Karlsson +29 more
2019bioRxiv52 citations Open access
Semantic Scholar
Universal probabilistic programming offers a powerful approach to statistical phylogenetics
F. Ronquist, J. Kudlicka, Viktor Senderov, J. Borgström +5 more
2021Communications Biology40 citations Open access
Semantic Scholar
Phylogenetic reconstruction of ancestral ecological networks through time for pierid butterflies and their host plants
M. P. Braga, N. Janz, Sören Nylin, F. Ronquist +1 more
2021bioRxiv37 citations Open access
Semantic Scholar
Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis
P. Arribas, C. Andújar, M. Bidartondo, Kristine Bohmann +21 more
2021Molecular Ecology33 citations Open access
Semantic Scholar
Using Parsimony-Guided Tree Proposals to Accelerate Convergence in Bayesian Phylogenetic Inference
Chi Zhang, J. Huelsenbeck, F. Ronquist
2019bioRxiv31 citations Open access
Semantic Scholar
FAVIS: Fast and versatile protocol for non-destructive metabarcoding of bulk insect samples
Elzbieta Iwaszkiewicz‐Eggebrecht, P. Łukasik, M. Buczek, Jun-Chen Deng +10 more
2023PLoS ONE24 citations Open access
Semantic Scholar
Optimizing insect metabarcoding using replicated mock communities
E. Iwaszkiewicz-Eggebrecht, Emma Granqvist, M. Buczek, Monika A. Prus +7 more
2022bioRxiv24 citations Open access
Semantic Scholar
Evaluation of non-destructive DNA extraction protocols for insect metabarcoding: gentler and shorter is better
D. Marquina, Tomas V. Roslin, P. Łukasik, F. Ronquist
2022Metabarcoding and Metagenomics22 citations Open access
Semantic Scholar
The data of the Swedish Malaise Trap Project, a countrywide inventory of Sweden's insect fauna
D. Karlsson, M. Forshage, K. Holston, F. Ronquist
2020Biodiversity Data Journal22 citations Open access
Semantic Scholar
Bayesian Inference of Ancestral Host–Parasite Interactions under a Phylogenetic Model of Host Repertoire Evolution
M. P. Braga, Michael J. Landis, Sören Nylin, N. Janz +1 more
2020Systematic Biology21 citations Open access
Semantic Scholar
Bayesian inference of ancestral host-parasite interactions under a phylogenetic model of host repertoire evolution
M. P. Braga, Michael J. Landis, Sören Nylin, N. Janz +1 more
2019bioRxiv21 citations Open access
Semantic Scholar
Compiling Universal Probabilistic Programming Languages with Efficient Parallel Sequential Monte Carlo Inference
Daniel Lundén, Joey Öhman, J. Kudlicka, Viktor Senderov +2 more
2021European Symposium on Programming17 citations Open access
Semantic Scholar
Awakening a taxonomist's third eye: exploring the utility of computer vision and deep learning in insect systematics
Miroslav Valan, D. Vondráček, F. Ronquist
2021Systematic Entomology16 citations Open access
Semantic Scholar
Skyline fossilized birth-death model is robust to violations of sampling assumptions in total-evidence dating
Chi Zhang, F. Ronquist, T. Stadler
2023bioRxiv14 citations Open access
Semantic Scholar
Peer Review #1 of "Genome-wide identification and characterization of non-specific lipid transfer proteins in cabbage (v0.2)"
J. Ji, H. Lv, Li-Mei Yang, Zhi-Yuan Fang +301 more
201812 citations Open access
Semantic Scholar
Peer Review #2 of "Molecular characterization and phylogenetic analyses of Lophodermella needle pathogens (Rhytismataceae) on Pinus species in the USA and Europe (v0.1)"
J. Ata, K. Burns, S. Marchetti, I. Munck +160 more
202110 citations Open access
Semantic Scholar
Peer Review #1 of "Hiding in plain sight: DNA barcoding suggests cryptic species in all ‘well-known’ Australian flower beetles (Scarabaeidae: Cetoniinae) (v0.1)"
A. Mitchell, Chris Moeseneder, P. Hutchinson, V. Allard +158 more
202010 citations Open access
Semantic Scholar
From Inquilines to Gall Inducers: Genomic Signature of a Life-Style Transition in Synergus Gall Wasps
Erik Gobbo, N. Lartillot, J. Hearn, G. Stone +4 more
2020Genome Biology and Evolution10 citations Open access
Semantic Scholar
Probabilistic Programming for Birth-Death Models of Evolution Using an Alive Particle Filter with Delayed Sampling
J. Kudlicka, Lawrence M. Murray, F. Ronquist, Thomas Bo Schön
2019Conference on Uncertainty in Artificial Intelligence10 citations
Semantic Scholar
Phylogenomic Analysis of Protein-Coding Genes Resolves Complex Gall Wasp Relationships
J. Hearn, Erik Gobbo, J. Nieves-Aldrey, A. Branca +5 more
2022bioRxiv9 citations Open access
Semantic Scholar
Life history of Parnips and the evolutionary origin of gall wasps
F. Ronquist, J. Nylander, H. Vårdal, J. Nieves-Aldrey
2018Journal of Hymenoptera Research9 citations Open access
Semantic Scholar
Automatic Alignment of Sequential Monte Carlo Inference in Higher-Order Probabilistic Programs
Daniel Lundén, David Broman, F. Ronquist, Lawrence M. Murray
2018arXiv.org8 citations
Semantic Scholar
Universal probabilistic programming: a powerful new approach to statistical phylogenetics
F. Ronquist, J. Kudlicka, Viktor Senderov, J. Borgström +5 more
2020bioRxiv7 citations Open access
Semantic Scholar
ASV portal: an interface to DNA-based biodiversity data in the Living Atlas
Maria Prager, D. Lundin, F. Ronquist, A. Andersson
2023BMC Bioinformatics5 citations Open access
Semantic Scholar
Automatic Alignment in Higher-Order Probabilistic Programming Languages
Daniel Lund'en, Gizem Çaylak, F. Ronquist, David Broman
2023European Symposium on Programming5 citations Open access
Semantic Scholar
Scuttling towards monophyly: phylogeny of the mega‐diverse genus Megaselia (Diptera: Phoridae)
Emily A. Hartop, Sibylle Häggqvist, Sven-Olof Ulefors, F. Ronquist
20205 citations Open access
Semantic Scholar
Establishing insect community composition using metabarcoding of soil samples, and preservative ethanol and homogenate from Malaise trap catches: surprising inconsistencies between methods
D. Marquina, R. Esparza-Salas, Tomas V. Roslin, F. Ronquist
2019bioRxiv5 citations Open access
Semantic Scholar
Online tree expansion could help solve the problem of scalability in Bayesian phylogenetics
J. Truszkowski, Allison L. Perrigo, David Broman, F. Ronquist +1 more
2023Systematic Biology3 citations Open access
Semantic Scholar
Evolution of butterfly-plant networks over time, as revealed by Bayesian inference of host repertoire
M. P. Braga, N. Janz, Sören Nylin, F. Ronquist +1 more
20213 citations
Semantic Scholar
Peer Review #2 of "A Pan-Amazonian species delimitation: high species diversity within the genus Amazophrynella (Anura: Bufonidae) (v0.1)"
R. Rojas, A. Fouquet, S. Ron, Emil José Hernández-Ruz +340 more
20183 citations Open access
Semantic Scholar
DINA: Open Source and Open Services - A Modern Approach for Sustainable Natural History Collection Management Systems
J. Macklin, Falko Glöckler, Jana Hoffmann, F. Ronquist +2 more
20171 citations Open access
Semantic Scholar
Xenacoelomorpha is the sister group to Nephrozoa 1
J. Cannon, Bruno C. Vellutini, J. Smith, F. Ronquist +3 more
20161 citations
Semantic Scholar
The ASV portal allows for efficient handling of DNA derived data in the Living Atlas
Maria Prager, D. Lundin, F. Ronquist, Anders F. Andersson
2023Biodiversity Information Science and Standards0 citations Open access
Semantic Scholar
Peer Review #1 of "MtDNA species-level phylogeny and delimitation support significantly underestimated diversity and endemism in the largest Neotropical cichlid genus (Cichlidae: Crenicichla) (v0.1)"
O. Říčan, Klára Dragová, Adriana Almirón, J. Casciotta +139 more
20210 citations Open access
Semantic Scholar
Author response for "Phylogenetic reconstruction of ancestral ecological networks through time for pierid butterflies and their host plants"
M. P. Braga, N. Janz, Sören Nylin, F. Ronquist +1 more
20210 citations
Semantic Scholar
Author response for "Phylogenetic reconstruction of ancestral ecological networks through time for pierid butterflies and their host plants"
M. P. Braga, N. Janz, Sören Nylin, F. Ronquist +1 more
20210 citations
Semantic Scholar
Peer Review #3 of "The effects of genetic drift and genomic selection on differentiation and local adaptation of the introduced populations of Aedes albopictus in southern Russia (v0.1)"
E. Konorov, V. Yurchenko, I. Patraman, Alexander Lukashev +395 more
20210 citations Open access
Semantic Scholar
Universal Probabilistic Programming Language Compilation with Parallel Efficient Sequential Monte Carlo Inference
Daniel Lund'en, Joey Ohman, J. Kudlicka, Viktor Senderov +2 more
2021arXiv.org0 citations
Semantic Scholar
Peer Review #2 of "Genetic diversity and structure of the noble crayfish populations in the Balkan Peninsula revealed by mitochondrial and microsatellite DNA markers (v0.1)"
R. Gross, Leona Lovrenčić, M. Jelić, F. Grandjean +259 more
20210 citations Open access
Semantic Scholar
Publisher Correction: Universal probabilistic programming offers a powerful approach to statistical phylogenetics
F. Ronquist, J. Kudlicka, Viktor Senderov, J. Borgström +5 more
2021Communications Biology0 citations Open access
Semantic Scholar
Figure 2 from: Karlsson D, Hartop E, Forshage M, Jaschhof M, Ronquist F (2020) The Swedish Malaise Trap Project: A 15 Year Retrospective on a Countrywide Insect Inventory. Biodiversity Data Journal 8: e47255. https://doi.org/10.3897/BDJ.8.e47255
D. Karlsson, Emily A. Hartop, M. Forshage, M. Jaschhof +1 more
20200 citations Open access
Semantic Scholar

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